Clone Sequence Records
BS01181.3prime Sequence
889 bp (753 high quality bases) assembled on 2005-11-30
> BS01181.3prime
ATGGTCTAGAAAGCTTCGCTACGTGGCGTCCATCAAAAAGCGCTGGAAGA
CTTCGCCATCGGAACTAGGTAGCTCTGTTTGTTGCGGTGAGTAGATTCTC
AAGTTCTGGAGTTGCTGCAGCGGAGAGCCATTCCCGCTGAAGTGTACCAC
CGCAACCGGCTGTAGGGATATGAGCTGTCCCTCCTCCCGCGGCTCCACAC
CACAGATGCCCAGCTTTTGGCACTGCTCAACGACAATGTCGTCGATTGAC
TGCGAAAGCAGTGCCTCCTGCTCAGGATCCACAATGGAGCTGCTGTTGAT
GGCAGCTATTTCGGCGCTCGCTGGTGAAGGCTGAGTATGCGAGTCGTTGC
CCTCCAGGAACGCCTTTATCAGCTGCTCCGGTGTCTGGGCCTCCTCGGTG
GGACATCGATGGGTCCTTTGACTGACCTTGTACCTGAACGTCTTTTGGCA
GAGCTCGCACTTGTAGGGCATCACTCCCGTGTGGATGCGCGTGTGGACAA
GGAAAGAGACTCGCTGCCGGAAACACTTGCCGCAGACTTCGCACTTGAAG
GGCTTTTCGCCGCTGTGAATCCTCTGGTGGTTATGCAGCGTAGACAGTTC
CTTGAAGGCGCGTCCACAAACCCCGCAGACATGGGGCTTTACCTCGCTGT
GGTAGAGCAAATGCTTGTGGTACGACTGCTGGAAGGTGAAGGTCCTGGCG
CAGATCTCGCATGTGTACGGCATCTCGCCGGTGTGGAGCCGCTTGTGCTT
CTTCAGAAAGTACTTGGTGGTGAAGGACTTGCTGCACACATCGCACTCCC
ACAGCTTCGGGGTGGCCGTGCCCGACTCCGGCGAACTGGGGGACTGCTGG
AGCATGCTCAGCGCCCCACTCAGCGCGTATGGCTGGGGA
BS01181.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14655-PA | 1578 | CG14655-RA | 710..1578 | 887..19 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14655-RA | 2137 | CG14655-RA | 938..1806 | 887..19 | 4345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4777828..4778340 | 19..531 | 2565 | 100 | Plus |
| 3R | 32079331 | 3R | 4778509..4778866 | 530..887 | 1790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:49:06 has no hits.
BS01181.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:57 Download gff for
BS01181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-PA | 709..1578 | 19..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:35 Download gff for
BS01181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-PA | 709..1578 | 19..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:51:33 Download gff for
BS01181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 937..1806 | 19..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:04:52 Download gff for
BS01181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 937..1806 | 19..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 21:04:52 Download gff for
BS01181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4777828..4778339 | 19..530 | 100 | <- | Plus |
| 3R | 4778510..4778866 | 531..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:51:33 Download gff for
BS01181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 603550..604061 | 19..530 | 100 | <- | Plus |
| arm_3R | 604232..604588 | 531..888 | 99 | | Plus |
BS01181.5prime Sequence
858 bp (699 high quality bases) assembled on 2005-11-30
> BS01181.5prime
GAAGTTATCAGTCGACATGTGTTCCACCTCGGTGCTGTGTCCGCTCTGCG
CGGTGCCCAGTTTCGGCAGTATTGACGCACTGCAGCAGAGGCTGATCAAG
GCGGCCAACGGCCCACTGGCCTGTCCCTTTGCCAACTGCAAGGAGCTCTT
CCTGGGGCTGGACAAGCTCACCATCCACCTGTTCTCGCACACAAGTCTGA
TGGCTCAGGAGGGAAACGAGAGTCCAGCGAATGGCCAACCCGCCTCGTCC
CGGGGCTTCCTTGCCGCAGCTCCTCCCAAACGGAGGGCCAAGCGAACCAG
GTCCAAGCCCGTCGTCCCAACCCCACCGCCTGTGCGGACCACCCCGCCCG
CCCACTGCGACATTTGCGAGTTCAGTTTCCGGAATACCGAGCTGAGGGAC
ATGCACGTCCGCTTAGTCCACGAAAATGCGGAGGGAGAACCCAAGCAAAA
GGAACCCCAACAGAAGGAACCGGACCAGGAGCCCTACAAGTGCCATCTCT
GCTCCAAGACGTTCCGAATGAAGGGCTCCCTTCGAATCCACCTGAAAGTA
GTGCACATGATGGGCGTGCCCTGCTCCAATCCCAATCCAAATCCTAATCC
CAGTCCTACACCCGCTTCTACCACCAGTGCAGTTACTGCCACGCCCAAGC
TGAGCATTTGCGATCGCATTCGACACACAGAGCCTGGAGCCCTTGGCAAC
GGAAATAACTCCACGTGCACCGCATCCCAGCCATACGCGCTGAGTGGGGC
GCTGAGCATGCTCCAGCAGTCCCCCAGTTCGCCGGAGTCGGGCACGGCCA
CCCCGAAGCTGTGGGAGTGCGATGTGTGCAGCAAGTCCTTCACCACCAAG
TACTTTCT
BS01181.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14655-PA | 1578 | CG14655-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14655-RA | 2137 | CG14655-RA | 225..1070 | 13..858 | 4215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4779618..4780078 | 473..13 | 2290 | 99.8 | Minus |
| 3R | 32079331 | 3R | 4778734..4779120 | 858..472 | 1935 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:04:11 has no hits.
BS01181.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:02:59 Download gff for
BS01181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-PA | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:36 Download gff for
BS01181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-PA | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:16:00 Download gff for
BS01181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 225..1070 | 13..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:23:35 Download gff for
BS01181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 225..1070 | 13..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:23:35 Download gff for
BS01181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4778734..4779119 | 473..858 | 100 | <- | Minus |
| 3R | 4779619..4780078 | 13..472 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:16:00 Download gff for
BS01181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 604456..604841 | 473..858 | 100 | <- | Minus |
| arm_3R | 605341..605800 | 13..472 | 99 | | Minus |
BS01181.complete Sequence
1612 bp (1612 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634555
> BS01181.complete
GAAGTTATCAGTCGACATGTGTTCCACCTCGGTGCTGTGTCCGCTCTGCG
CGGTGCCCAGTTTCGGCAGTATTGACGCACTGCAGCAGAGGCTGATCAAG
GCGGCCAACGGCCCACTGGCCTGTCCCTTTGCCAACTGCAAGGAGCTCTT
CCTGGGGCTGGACAAGCTCACCATCCACCTGTTCTCGCACACAAGTCTGA
TGGCTCAGGAGGGAAACGAGAGTCCAGCGAATGGCCAACCCGCCTCGTCC
CGGGGCTTCCTTGCCGCAGCTCCTCCCAAACGGAGGGCCAAGCGAACCAG
GTCCAAGCCCGTCGTCCCAACCCCACCGCCTGTGCGGACCACCCCGCCCG
CCCACTGCGACATTTGCGAGTTCAGTTTCCGGAATACCGAGCTGAGGGAC
ATGCACGTCCGCTTAGTCCACGAAAATGCGGAGGGAGAACCCAAGCAAAA
GGAACCCCAACAGAAGGAACCGGACCAGGAGCCCTACAAGTGCCATCTCT
GCTCCAAGACGTTCCGAATGAAGGGCTCCCTTCGAATCCACCTGAAAGTA
GTGCACATGATGGGCGTGCCCTGCTCCAATCCCAATCCAAATCCTAATCC
CAGTCCTACACCCGCTTCTACCACCAGTGCAGTTACTGCCACGCCCAAGC
TGAGCATTTGCGATCGCATTCGACACACAGAGCCTGGAGCCCTTGGCAAC
GGAAATAACTCCACGTGCACCGCATCCCAGCCATACGCGCTGAGTGGGGC
GCTGAGCATGCTCCAGCAGTCCCCCAGTTCGCCGGAGTCGGGCACGGCCA
CCCCGAAGCTGTGGGAGTGCGATGTGTGCAGCAAGTCCTTCACCACCAAG
TACTTTCTGAAGAAGCACAAGCGGCTCCACACCGGCGAGATGCCGTACAC
ATGCGAGATCTGCGCCAGGACCTTCACCTTCCAGCAGTCGTACCACAAGC
ATTTGCTCTACCACAGCGAGGTAAAGCCCCATGTCTGCGGGGTTTGTGGA
CGCGCCTTCAAGGAACTGTCTACGCTGCATAACCACCAGAGGATTCACAG
CGGCGAAAAGCCCTTCAAGTGCGAAGTCTGCGGCAAGTGTTTCCGGCAGC
GAGTCTCTTTCCTTGTCCACACGCGCATCCACACGGGAGTGATGCCCTAC
AAGTGCGAGCTCTGCCAAAAGACGTTCAGGTACAAGGTCAGTCAAAGGAC
CCATCGATGTCCCACCGAGGAGGCCCAGACACCGGAGCAGCTGATAAAGG
CGTTCCTGGAGGGCAACGACTCGCATACTCAGCCTTCACCAGCGAGCGCC
GAAATAGCTGCCATCAACAGCAGCTCCATTGTGGATCCTGAGCAGGAGGC
ACTGCTTTCGCAGTCAATCGACGACATTGTCGTTGAGCAGTGCCAAAAGC
TGGGCATCTGTGGTGTGGAGCCGCGGGAGGAGGGACAGCTCATATCCCTA
CAGCCGGTTGCGGTGGTACACTTCAGCGGGAATGGCTCTCCGCTGCAGCA
ACTCCAGAACTTGAGAATCTACTCACCGCAACAAACAGAGCTACCTAGTT
CCGATGGCGAAGTCTTCCAGCGCTTTTTGATGGACGCCACGTAGCGAAGC
TTTCTAGACCAT
BS01181.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14655-RA | 1578 | CG14655-PA | 1..1578 | 17..1594 | 7890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14655-RA | 2137 | CG14655-RA | 225..1806 | 13..1594 | 7895 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4778509..4779120 | 1083..472 | 3060 | 100 | Minus |
| 3R | 32079331 | 3R | 4777828..4778340 | 1594..1082 | 2565 | 100 | Minus |
| 3R | 32079331 | 3R | 4779618..4780078 | 473..13 | 2290 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:47:19 has no hits.
BS01181.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:43 Download gff for
BS01181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 1..1578 | 17..1594 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:56 Download gff for
BS01181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 254..1835 | 13..1594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:18 Download gff for
BS01181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 229..1806 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:43 Download gff for
BS01181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 254..1835 | 13..1594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:49 Download gff for
BS01181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 229..1806 | 17..1596 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:49 Download gff for
BS01181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4777825..4778339 | 1083..1596 | 99 | <- | Minus |
| 3R | 4778510..4779119 | 473..1082 | 100 | <- | Minus |
| 3R | 4779619..4780074 | 17..472 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:18 Download gff for
BS01181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 605341..605796 | 17..472 | 100 | | Minus |
| arm_3R | 603547..604061 | 1083..1596 | 99 | <- | Minus |
| arm_3R | 604232..604841 | 473..1082 | 100 | <- | Minus |
BS01181.pep Sequence
Translation from 16 to 1593
> BS01181.pep
MCSTSVLCPLCAVPSFGSIDALQQRLIKAANGPLACPFANCKELFLGLDK
LTIHLFSHTSLMAQEGNESPANGQPASSRGFLAAAPPKRRAKRTRSKPVV
PTPPPVRTTPPAHCDICEFSFRNTELRDMHVRLVHENAEGEPKQKEPQQK
EPDQEPYKCHLCSKTFRMKGSLRIHLKVVHMMGVPCSNPNPNPNPSPTPA
STTSAVTATPKLSICDRIRHTEPGALGNGNNSTCTASQPYALSGALSMLQ
QSPSSPESGTATPKLWECDVCSKSFTTKYFLKKHKRLHTGEMPYTCEICA
RTFTFQQSYHKHLLYHSEVKPHVCGVCGRAFKELSTLHNHQRIHSGEKPF
KCEVCGKCFRQRVSFLVHTRIHTGVMPYKCELCQKTFRYKVSQRTHRCPT
EEAQTPEQLIKAFLEGNDSHTQPSPASAEIAAINSSSIVDPEQEALLSQS
IDDIVVEQCQKLGICGVEPREEGQLISLQPVAVVHFSGNGSPLQQLQNLR
IYSPQQTELPSSDGEVFQRFLMDAT*
BS01181.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14655-PA | 525 | CG14655-PA | 1..525 | 1..525 | 2821 | 100 | Plus |
| Clamp-PA | 561 | CG1832-PA | 357..552 | 237..445 | 356 | 33.6 | Plus |
| Clamp-PB | 566 | CG1832-PB | 362..557 | 237..445 | 356 | 33.6 | Plus |
| erm-PB | 603 | CG31670-PB | 278..464 | 232..418 | 330 | 34.9 | Plus |
| erm-PA | 611 | CG31670-PA | 286..472 | 232..418 | 330 | 34.9 | Plus |
| erm-PB | 603 | CG31670-PB | 262..468 | 188..396 | 288 | 30.3 | Plus |
