Clone Sequence Records
BS01183.3prime Sequence
887 bp (811 high quality bases) assembled on 2005-11-30
> BS01183.3prime
ATGGTCTAGAAAGCTTCGTTACTGATGAGCCGCTCCCATCCTCTGGCCGT
ACATGGCGTATGGCGAGTAGTAGGGTCCCAGAGCAGCTGCCGCAGCCGCC
GCGGCAGGATTGAATGCTCCAGCGGCGCCGAAGGGCGAAGGTCCTCCAGC
CAAGGCGCCTGGTGGTGGCTTGGCGTATGGATGATACCTCGCCGCTGCCG
CAGCCGCTGACATGGGACTCAGTGGTGGTGTTGGATAGCCAGCTCGGAGA
GCCGATGGCGGAAATAGGGTTCCCAGCAGGGATTGAGCCTGCGATTGGGC
CAAGGCCGCCGCAGCAGCCGCCGGATCGGAGAGATTGCCCGTATGGGTGC
GCAGGTGGGAGAAGAGCTCGTCGGAGGTCTGGAATCGCTTGCCGCAGTAG
GCATCGCCCACCACCCAACTGCACACGTAGGGTGCCGAACGGGCTGCCGC
CGCGTTTGCCGCAGCAGCGGCCGCTGCCTGCGAGTATGGATGAGCTGGTG
GCAGTCCGGCGGCACTGGCCATGGCCAGGCCGTATTTCTGATGCTCGCAC
TGGGTGCATCCGGCGGGGCAGGGGGCACCCATGAGCATTTGTTGCGTGTG
CGCCGAGTAGGGACATCCCTGGCAATACGGATCCTTGCAGACTGGCACTA
TAGCCTCGCCGCCAGCTGGTGTCTTGATGCGCTGATAACTTATGTACGGA
TTGGGCTGTCCGGCTGGTCCACCGCCGGGAGCTCCGCCTGGATATCCTCC
ATTGGCGGCAACTGCCAACATGGCGGCGTGATGGTGTGAGAATCCTCCGG
CAAACGGTGGCCGGAAAGCGGGATTGGCGTGCTGCTCCATTCGGGGCGGG
CAGCACANGGCGGACAGGGGATTCAGCCCATAGGGTC
BS01183.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4491-PA | 1614 | noc-RA | 746..1614 | 887..19 | 4301 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
noc-RB | 2673 | CG4491-RB | 1133..2001 | 887..19 | 4319 | 99.8 | Minus |
noc-RA | 2859 | CG4491-RA | 1133..2001 | 887..19 | 4319 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14492293..14493161 | 887..19 | 4319 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:31:32 has no hits.
BS01183.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:02 Download gff for
BS01183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
noc-PA | 746..1614 | 19..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:40 Download gff for
BS01183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4491-PA | 746..1614 | 19..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:05:49 Download gff for
BS01183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
noc-RA | 1133..2009 | 11..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:16:54 Download gff for
BS01183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
noc-RA | 1133..2009 | 11..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:16:54 Download gff for
BS01183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14492293..14493169 | 11..887 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:05:49 Download gff for
BS01183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14492293..14493169 | 11..887 | 99 | | Minus |
BS01183.5prime Sequence
869 bp (868 high quality bases) assembled on 2005-11-30
> BS01183.5prime
GAAGTTATCAGTCGACATGGTTGTCTTGGAAGGAGGCGGCGGCGTTGTTA
CCATCGGTAACAACCAGTACCTTCAACCGGATTATCTGGCCCCATTGCCA
ACGACGATGGACGCCAAAAAGAGTCCCTTGGCTCTGCTCGCACAGACTTG
CTCCCAAATTGGAGCGGATTCGTCGGCAGTGAAACCCCTGCTGGCAATGG
ACAAGAACAAGACAAAGCCCGGAGCATGCTCCTCGTCGTCGAACTCGTCG
AGTTCCTCGGGCAGTGCTGAGATCTCGGCAGCCAAGTCACCCTCCGGCCA
GGCCAAATCGCCCAAGTCGAGCACTCCAATCAGCTCGACGGCAACCAGCG
CAAGTCTGAGTAATACCAGCACCGGTGAAATCAAACTGGCCTTCAAGCCC
TACGAGACCAATGTGCTGAGCCACCAGAACCAGAACTCCTTCAAGAGCAG
CTCTTCGCTGGATGCGGAACCCACGCGTCCCAGCTCTAAGAACTCCTCAT
CCGCCCAGGAGCGTGTGCCATCGCGCAGCAAATCAAATGCCACGCCCACA
GATGGCGGCAAGGCGGAGATTTCCGCGCACGATTCCTCATCCAGCCGAAA
GACTGTCTCCCCGTCGGGATCGTCGCAACGCGGCGCCAGTCCCATTGTGC
GCTCCGGCATGGAGGTGCTGAACAATGCCAACGGAACCGCCCAGCATCCC
AAGGAAATGAGCAGCATGGCTGCGGCGGCAGCAGCAGCAGCAGCGGCTTA
CAAGGCCGCCGGACCCTATGGGCTGAATCCCCTGTCCGCCCTGTGCTGCC
CGCCCGGAATGGAGCAGCACGCCAATCCCGCTTTCCGGCCACCCGTTTGC
CGGAGGATTCTCACACCAT
BS01183.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4491-PA | 1614 | noc-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
CG4491-PA | 1614 | noc-RA | 826..852 | 843..869 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:09:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
noc-RB | 2673 | CG4491-RB | 388..1239 | 17..869 | 4240 | 99.9 | Plus |
noc-RA | 2859 | CG4491-RA | 388..1239 | 17..869 | 4240 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14491637..14492399 | 106..869 | 3770 | 99.9 | Plus |
2L | 23513712 | 2L | 14491246..14491335 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 06:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 1440..1507 | 142..209 | 114 | 68.6 | Plus |
BS01183.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:03 Download gff for
BS01183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
noc-PA | 1..852 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:42 Download gff for
BS01183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4491-PA | 1..852 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:34:04 Download gff for
BS01183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
noc-RA | 385..1239 | 14..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:10 Download gff for
BS01183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
noc-RA | 385..1239 | 14..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:10 Download gff for
BS01183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14491243..14491335 | 14..106 | 98 | -> | Plus |
2L | 14491638..14492399 | 107..869 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:34:04 Download gff for
BS01183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14491243..14491335 | 14..106 | 98 | -> | Plus |
arm_2L | 14491638..14492399 | 107..869 | 99 | | Plus |
BS01183.complete Sequence
1648 bp (1648 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634556
> BS01183.complete
GAAGTTATCAGTCGACATGGTTGTCTTGGAAGGAGGCGGCGGCGTTGTTA
CCATCGGTAACAACCAGTACCTTCAACCGGATTATCTGGCCCCATTGCCA
ACGACGATGGACGCCAAAAAGAGTCCCTTGGCTCTGCTCGCACAGACTTG
CTCCCAAATTGGAGCGGATTCGTCGGCAGTGAAACCCCTGCTGGCAATGG
ACAAGAACAAGACAAAGCCCGGAGCATGCTCCTCGTCGTCGAACTCGTCG
AGTTCCTCGGGCAGTGCTGAGATCTCGGCAGCCAAGTCACCCTCCGGCCA
GGCCAAATCGCCCAAGTCGAGCACTCCAATCAGCTCGACGGCAACCAGCG
CAAGTCTGAGTAATACCAGCACCGGTGAAATCAAACTGGCCTTCAAGCCC
TACGAGACCAATGTGCTGAGCCACCAGAACCAGAACTCCTTCAAGAGCAG
CTCTTCGCTGGATGCGGAACCCACGCGTCCCAGCTCTAAGAACTCCTCAT
CCGCCCAGGAGCGTGTGCCATCGCGCAGCAAATCAAATGCCACGCCCACA
GATGGCGGCAAGGCGGAGATTTCCGCGCACGATTCCTCATCCAGCCGAAA
GACTGTCTCCCCGTCGGGATCGTCGCAACGCGGCGCCAGTCCCATTGTGC
GCTCCGGCATGGAGGTGCTGAACAATGCCAACGGAACCGCCCAGCATCCC
AAGGAAATGAGCAGCATGGCTGCGGCGGCAGCAGCAGCAGCAGCGGCTTA
CAAGGCCGCCGGACCCTATGGGCTGAATCCCCTGTCCGCCCTGTGCTGCC
CGCCCGGAATGGAGCAGCACGCCAATCCCGCTTTCCGGCCACCGTTTGCC
GGAGGATTCTCACACCATCACGCCGCCATGTTGGCAGTTGCCGCCAATGG
AGGATATCCAGGCGGAGCTCCCGGCGGTGGACCAGCCGGACAGCCCAATC
CGTACATAAGTTATCAGCGCATCAAGACACCAGCTGGCGGCGAGGCTATA
GTGCCAGTCTGCAAGGATCCGTATTGCCAGGGATGTCCCTACTCGGCGCA
CACGCAACAAATGCTCATGGGTGCCCCCTGCCCCGCCGGATGCACCCAGT
GCGAGCATCAGAAATACGGCCTGGCCATGGCCAGTGCCGCCGGACTGCCA
CCAGCTCATCCATACTCGCAGGCAGCGGCCGCTGCTGCGGCAAACGCGGC
GGCAGCCCGTTCGGCACCCTACGTGTGCAGTTGGGTGGTGGGCGATGCCT
ACTGCGGCAAGCGATTCCAGACCTCCGACGAGCTCTTCTCCCACCTGCGC
ACCCATACGGGCAATCTCTCCGATCCGGCGGCTGCTGCGGCGGCCTTGGC
CCAATCGCAGGCTCAATCCCTGCTGGGAACCCTATTTCCGCCATCGGCTC
TCCGAGCTGGCTATCCAACACCACCACTGAGTCCCATGTCAGCGGCTGCG
GCAGCGGCGAGGTATCATCCATACGCCAAGCCACCACCAGGCGCCTTGGC
TGGAGGACCTTCGCCCTTCGGCGCCGCTGGAGCATTCAATCCTGCCGCGG
CGGCTGCGGCAGCTGCTCTGGGACCCTACTACTCGCCATACGCCATGTAC
GGCCAGAGGATGGGAGCGGCTCATCAGTAACGAAGCTTTCTAGACCAT
BS01183.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
noc-RB | 1614 | CG4491-PB | 1..1614 | 17..1630 | 8070 | 100 | Plus |
noc-RA | 1614 | CG4491-PA | 1..1614 | 17..1630 | 8070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
noc-RB | 2673 | CG4491-RB | 388..2001 | 17..1630 | 8070 | 100 | Plus |
noc-RA | 2859 | CG4491-RA | 388..2001 | 17..1630 | 8070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14491637..14493161 | 106..1630 | 7625 | 100 | Plus |
2L | 23513712 | 2L | 14491246..14491335 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 06:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 1440..1507 | 142..209 | 114 | 68.6 | Plus |
BS01183.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:30:28 Download gff for
BS01183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
noc-RA | 1..1614 | 17..1630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:14:17 Download gff for
BS01183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
noc-RA | 382..2006 | 14..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:31 Download gff for
BS01183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
noc-RA | 388..2003 | 17..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:30:28 Download gff for
BS01183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
noc-RA | 382..2006 | 14..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:32 Download gff for
BS01183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
noc-RA | 388..2003 | 17..1632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:32 Download gff for
BS01183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14491246..14491335 | 17..106 | 100 | -> | Plus |
2L | 14491638..14493163 | 107..1632 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:31 Download gff for
BS01183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14491246..14491335 | 17..106 | 100 | -> | Plus |
arm_2L | 14491638..14493163 | 107..1632 | 99 | | Plus |
BS01183.pep Sequence
Translation from 16 to 1629
> BS01183.pep
MVVLEGGGGVVTIGNNQYLQPDYLAPLPTTMDAKKSPLALLAQTCSQIGA
DSSAVKPLLAMDKNKTKPGACSSSSNSSSSSGSAEISAAKSPSGQAKSPK
SSTPISSTATSASLSNTSTGEIKLAFKPYETNVLSHQNQNSFKSSSSLDA
EPTRPSSKNSSSAQERVPSRSKSNATPTDGGKAEISAHDSSSSRKTVSPS
GSSQRGASPIVRSGMEVLNNANGTAQHPKEMSSMAAAAAAAAAAYKAAGP
YGLNPLSALCCPPGMEQHANPAFRPPFAGGFSHHHAAMLAVAANGGYPGG
APGGGPAGQPNPYISYQRIKTPAGGEAIVPVCKDPYCQGCPYSAHTQQML
MGAPCPAGCTQCEHQKYGLAMASAAGLPPAHPYSQAAAAAAANAAAARSA
PYVCSWVVGDAYCGKRFQTSDELFSHLRTHTGNLSDPAAAAAALAQSQAQ
SLLGTLFPPSALRAGYPTPPLSPMSAAAAAARYHPYAKPPPGALAGGPSP
FGAAGAFNPAAAAAAAALGPYYSPYAMYGQRMGAAHQ*
BS01183.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
noc-PB | 537 | CG4491-PB | 1..537 | 1..537 | 2792 | 100 | Plus |
noc-PA | 537 | CG4491-PA | 1..537 | 1..537 | 2792 | 100 | Plus |
elB-PC | 552 | CG4220-PC | 6..551 | 15..536 | 662 | 35.5 | Plus |
elB-PD | 553 | CG4220-PD | 6..552 | 15..536 | 650 | 35.4 | Plus |
Muc91C-PB | 949 | CG7709-PB | 475..925 | 52..523 | 158 | 23.5 | Plus |