Clone BS01183 Report

Search the DGRC for BS01183

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:83
Vector:pDNR-Dual
Associated Gene/Transcriptnoc-RA
Protein status:BS01183.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01183.3prime Sequence

887 bp (811 high quality bases) assembled on 2005-11-30

> BS01183.3prime
ATGGTCTAGAAAGCTTCGTTACTGATGAGCCGCTCCCATCCTCTGGCCGT
ACATGGCGTATGGCGAGTAGTAGGGTCCCAGAGCAGCTGCCGCAGCCGCC
GCGGCAGGATTGAATGCTCCAGCGGCGCCGAAGGGCGAAGGTCCTCCAGC
CAAGGCGCCTGGTGGTGGCTTGGCGTATGGATGATACCTCGCCGCTGCCG
CAGCCGCTGACATGGGACTCAGTGGTGGTGTTGGATAGCCAGCTCGGAGA
GCCGATGGCGGAAATAGGGTTCCCAGCAGGGATTGAGCCTGCGATTGGGC
CAAGGCCGCCGCAGCAGCCGCCGGATCGGAGAGATTGCCCGTATGGGTGC
GCAGGTGGGAGAAGAGCTCGTCGGAGGTCTGGAATCGCTTGCCGCAGTAG
GCATCGCCCACCACCCAACTGCACACGTAGGGTGCCGAACGGGCTGCCGC
CGCGTTTGCCGCAGCAGCGGCCGCTGCCTGCGAGTATGGATGAGCTGGTG
GCAGTCCGGCGGCACTGGCCATGGCCAGGCCGTATTTCTGATGCTCGCAC
TGGGTGCATCCGGCGGGGCAGGGGGCACCCATGAGCATTTGTTGCGTGTG
CGCCGAGTAGGGACATCCCTGGCAATACGGATCCTTGCAGACTGGCACTA
TAGCCTCGCCGCCAGCTGGTGTCTTGATGCGCTGATAACTTATGTACGGA
TTGGGCTGTCCGGCTGGTCCACCGCCGGGAGCTCCGCCTGGATATCCTCC
ATTGGCGGCAACTGCCAACATGGCGGCGTGATGGTGTGAGAATCCTCCGG
CAAACGGTGGCCGGAAAGCGGGATTGGCGTGCTGCTCCATTCGGGGCGGG
CAGCACANGGCGGACAGGGGATTCAGCCCATAGGGTC

BS01183.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4491-PA 1614 noc-RA 746..1614 887..19 4301 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
noc-RB 2673 CG4491-RB 1133..2001 887..19 4319 99.8 Minus
noc-RA 2859 CG4491-RA 1133..2001 887..19 4319 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14492293..14493161 887..19 4319 99.8 Minus
Blast to na_te.dros performed on 2015-02-09 02:31:32 has no hits.

BS01183.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:02 Download gff for BS01183.3prime
Subject Subject Range Query Range Percent Splice Strand
noc-PA 746..1614 19..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:40 Download gff for BS01183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4491-PA 746..1614 19..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:05:49 Download gff for BS01183.3prime
Subject Subject Range Query Range Percent Splice Strand
noc-RA 1133..2009 11..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:16:54 Download gff for BS01183.3prime
Subject Subject Range Query Range Percent Splice Strand
noc-RA 1133..2009 11..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:16:54 Download gff for BS01183.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14492293..14493169 11..887 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:05:49 Download gff for BS01183.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14492293..14493169 11..887 99   Minus

BS01183.5prime Sequence

869 bp (868 high quality bases) assembled on 2005-11-30

> BS01183.5prime
GAAGTTATCAGTCGACATGGTTGTCTTGGAAGGAGGCGGCGGCGTTGTTA
CCATCGGTAACAACCAGTACCTTCAACCGGATTATCTGGCCCCATTGCCA
ACGACGATGGACGCCAAAAAGAGTCCCTTGGCTCTGCTCGCACAGACTTG
CTCCCAAATTGGAGCGGATTCGTCGGCAGTGAAACCCCTGCTGGCAATGG
ACAAGAACAAGACAAAGCCCGGAGCATGCTCCTCGTCGTCGAACTCGTCG
AGTTCCTCGGGCAGTGCTGAGATCTCGGCAGCCAAGTCACCCTCCGGCCA
GGCCAAATCGCCCAAGTCGAGCACTCCAATCAGCTCGACGGCAACCAGCG
CAAGTCTGAGTAATACCAGCACCGGTGAAATCAAACTGGCCTTCAAGCCC
TACGAGACCAATGTGCTGAGCCACCAGAACCAGAACTCCTTCAAGAGCAG
CTCTTCGCTGGATGCGGAACCCACGCGTCCCAGCTCTAAGAACTCCTCAT
CCGCCCAGGAGCGTGTGCCATCGCGCAGCAAATCAAATGCCACGCCCACA
GATGGCGGCAAGGCGGAGATTTCCGCGCACGATTCCTCATCCAGCCGAAA
GACTGTCTCCCCGTCGGGATCGTCGCAACGCGGCGCCAGTCCCATTGTGC
GCTCCGGCATGGAGGTGCTGAACAATGCCAACGGAACCGCCCAGCATCCC
AAGGAAATGAGCAGCATGGCTGCGGCGGCAGCAGCAGCAGCAGCGGCTTA
CAAGGCCGCCGGACCCTATGGGCTGAATCCCCTGTCCGCCCTGTGCTGCC
CGCCCGGAATGGAGCAGCACGCCAATCCCGCTTTCCGGCCACCCGTTTGC
CGGAGGATTCTCACACCAT

BS01183.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4491-PA 1614 noc-RA 1..827 17..843 4135 100 Plus
CG4491-PA 1614 noc-RA 826..852 843..869 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
noc-RB 2673 CG4491-RB 388..1239 17..869 4240 99.9 Plus
noc-RA 2859 CG4491-RA 388..1239 17..869 4240 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14491637..14492399 106..869 3770 99.9 Plus
2L 23513712 2L 14491246..14491335 17..106 450 100 Plus
Blast to na_te.dros performed 2015-02-12 06:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 1440..1507 142..209 114 68.6 Plus

BS01183.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:03 Download gff for BS01183.5prime
Subject Subject Range Query Range Percent Splice Strand
noc-PA 1..852 17..869 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:42 Download gff for BS01183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4491-PA 1..852 17..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:34:04 Download gff for BS01183.5prime
Subject Subject Range Query Range Percent Splice Strand
noc-RA 385..1239 14..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:10 Download gff for BS01183.5prime
Subject Subject Range Query Range Percent Splice Strand
noc-RA 385..1239 14..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:10 Download gff for BS01183.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14491243..14491335 14..106 98 -> Plus
2L 14491638..14492399 107..869 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:34:04 Download gff for BS01183.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14491243..14491335 14..106 98 -> Plus
arm_2L 14491638..14492399 107..869 99   Plus

BS01183.complete Sequence

1648 bp (1648 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634556

> BS01183.complete
GAAGTTATCAGTCGACATGGTTGTCTTGGAAGGAGGCGGCGGCGTTGTTA
CCATCGGTAACAACCAGTACCTTCAACCGGATTATCTGGCCCCATTGCCA
ACGACGATGGACGCCAAAAAGAGTCCCTTGGCTCTGCTCGCACAGACTTG
CTCCCAAATTGGAGCGGATTCGTCGGCAGTGAAACCCCTGCTGGCAATGG
ACAAGAACAAGACAAAGCCCGGAGCATGCTCCTCGTCGTCGAACTCGTCG
AGTTCCTCGGGCAGTGCTGAGATCTCGGCAGCCAAGTCACCCTCCGGCCA
GGCCAAATCGCCCAAGTCGAGCACTCCAATCAGCTCGACGGCAACCAGCG
CAAGTCTGAGTAATACCAGCACCGGTGAAATCAAACTGGCCTTCAAGCCC
TACGAGACCAATGTGCTGAGCCACCAGAACCAGAACTCCTTCAAGAGCAG
CTCTTCGCTGGATGCGGAACCCACGCGTCCCAGCTCTAAGAACTCCTCAT
CCGCCCAGGAGCGTGTGCCATCGCGCAGCAAATCAAATGCCACGCCCACA
GATGGCGGCAAGGCGGAGATTTCCGCGCACGATTCCTCATCCAGCCGAAA
GACTGTCTCCCCGTCGGGATCGTCGCAACGCGGCGCCAGTCCCATTGTGC
GCTCCGGCATGGAGGTGCTGAACAATGCCAACGGAACCGCCCAGCATCCC
AAGGAAATGAGCAGCATGGCTGCGGCGGCAGCAGCAGCAGCAGCGGCTTA
CAAGGCCGCCGGACCCTATGGGCTGAATCCCCTGTCCGCCCTGTGCTGCC
CGCCCGGAATGGAGCAGCACGCCAATCCCGCTTTCCGGCCACCGTTTGCC
GGAGGATTCTCACACCATCACGCCGCCATGTTGGCAGTTGCCGCCAATGG
AGGATATCCAGGCGGAGCTCCCGGCGGTGGACCAGCCGGACAGCCCAATC
CGTACATAAGTTATCAGCGCATCAAGACACCAGCTGGCGGCGAGGCTATA
GTGCCAGTCTGCAAGGATCCGTATTGCCAGGGATGTCCCTACTCGGCGCA
CACGCAACAAATGCTCATGGGTGCCCCCTGCCCCGCCGGATGCACCCAGT
GCGAGCATCAGAAATACGGCCTGGCCATGGCCAGTGCCGCCGGACTGCCA
CCAGCTCATCCATACTCGCAGGCAGCGGCCGCTGCTGCGGCAAACGCGGC
GGCAGCCCGTTCGGCACCCTACGTGTGCAGTTGGGTGGTGGGCGATGCCT
ACTGCGGCAAGCGATTCCAGACCTCCGACGAGCTCTTCTCCCACCTGCGC
ACCCATACGGGCAATCTCTCCGATCCGGCGGCTGCTGCGGCGGCCTTGGC
CCAATCGCAGGCTCAATCCCTGCTGGGAACCCTATTTCCGCCATCGGCTC
TCCGAGCTGGCTATCCAACACCACCACTGAGTCCCATGTCAGCGGCTGCG
GCAGCGGCGAGGTATCATCCATACGCCAAGCCACCACCAGGCGCCTTGGC
TGGAGGACCTTCGCCCTTCGGCGCCGCTGGAGCATTCAATCCTGCCGCGG
CGGCTGCGGCAGCTGCTCTGGGACCCTACTACTCGCCATACGCCATGTAC
GGCCAGAGGATGGGAGCGGCTCATCAGTAACGAAGCTTTCTAGACCAT

BS01183.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
noc-RB 1614 CG4491-PB 1..1614 17..1630 8070 100 Plus
noc-RA 1614 CG4491-PA 1..1614 17..1630 8070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
noc-RB 2673 CG4491-RB 388..2001 17..1630 8070 100 Plus
noc-RA 2859 CG4491-RA 388..2001 17..1630 8070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14491637..14493161 106..1630 7625 100 Plus
2L 23513712 2L 14491246..14491335 17..106 450 100 Plus
Blast to na_te.dros performed 2014-11-27 06:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 1440..1507 142..209 114 68.6 Plus

BS01183.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:30:28 Download gff for BS01183.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 1..1614 17..1630 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:14:17 Download gff for BS01183.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 382..2006 14..1638 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:31 Download gff for BS01183.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 388..2003 17..1632 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:30:28 Download gff for BS01183.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 382..2006 14..1638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:32 Download gff for BS01183.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 388..2003 17..1632 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:32 Download gff for BS01183.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14491246..14491335 17..106 100 -> Plus
2L 14491638..14493163 107..1632 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:31 Download gff for BS01183.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14491246..14491335 17..106 100 -> Plus
arm_2L 14491638..14493163 107..1632 99   Plus

BS01183.pep Sequence

Translation from 16 to 1629

> BS01183.pep
MVVLEGGGGVVTIGNNQYLQPDYLAPLPTTMDAKKSPLALLAQTCSQIGA
DSSAVKPLLAMDKNKTKPGACSSSSNSSSSSGSAEISAAKSPSGQAKSPK
SSTPISSTATSASLSNTSTGEIKLAFKPYETNVLSHQNQNSFKSSSSLDA
EPTRPSSKNSSSAQERVPSRSKSNATPTDGGKAEISAHDSSSSRKTVSPS
GSSQRGASPIVRSGMEVLNNANGTAQHPKEMSSMAAAAAAAAAAYKAAGP
YGLNPLSALCCPPGMEQHANPAFRPPFAGGFSHHHAAMLAVAANGGYPGG
APGGGPAGQPNPYISYQRIKTPAGGEAIVPVCKDPYCQGCPYSAHTQQML
MGAPCPAGCTQCEHQKYGLAMASAAGLPPAHPYSQAAAAAAANAAAARSA
PYVCSWVVGDAYCGKRFQTSDELFSHLRTHTGNLSDPAAAAAALAQSQAQ
SLLGTLFPPSALRAGYPTPPLSPMSAAAAAARYHPYAKPPPGALAGGPSP
FGAAGAFNPAAAAAAAALGPYYSPYAMYGQRMGAAHQ*

BS01183.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
noc-PB 537 CG4491-PB 1..537 1..537 2792 100 Plus
noc-PA 537 CG4491-PA 1..537 1..537 2792 100 Plus
elB-PC 552 CG4220-PC 6..551 15..536 662 35.5 Plus
elB-PD 553 CG4220-PD 6..552 15..536 650 35.4 Plus
Muc91C-PB 949 CG7709-PB 475..925 52..523 158 23.5 Plus