Clone Sequence Records
BS01189.3prime Sequence
836 bp (808 high quality bases) assembled on 2005-11-30
> BS01189.3prime
ATGGTCTAGAAAGCTTCGTCACACCTGGATCTGATCCTCGTCGTCCGACT
GGGAACAGCTGTCAACGGATCGTCCTGGCGGACTGCCCGGATTCAGCGTT
GGACTCGGCGTCGATGGTGGCCTTGGTGGCGGCGAGGCGGATGCGGAATG
GGCCGGAATCGGTTTGACCAGGCCACTGGGCGGAGATCCTCCGCCCACCG
AAGGTGGTGGCGCTACCGGATGCGGTCCGCCCGGATTGGCAGCGGAGGCA
GCCGCAGCGGCACTCTGATAGTAGCTGCTCAGCGAGGACAGCGAACTGGA
GGCGGACAGGTGGGAGAAGGGTGCCGGACCCACGCCCACCCCGACGCCCA
CTCCGACGGACGGAACGCCGGCGTATAGGTTGTAGGGCAGTGGCTTCTGC
ATGGCGGCCGCAGCGGCCGCTTGACGGTAATAGATGTCTATGTTCGTGTG
GGGCGTGGCTCCGTGGGCGGCGCCGGCAGCGGCCGCATACGGCCAGGCGC
CCAGGTAAGGCGATCCGCCGTAAAGTCGCTGAAAGGCCGCGAAGTTTCCA
GCCTCTGCGAGGAGTTCCAGGCCCACTGCTGTTTGGCGCTTCCATTTGGT
TCTGCGGTTTTGGTACCAAGTTTTCACCTGGCAATCGCTCAGATCCAACT
TGTGGGCCAGCTCCTGGCGCTCCTGAACGCTAAGGTACTTCTGCCGCTCG
AAGGACTTCTCGAGCGTCTGCAGCTGGTGATCCGTGAAGGCGGTACGCGC
CTTTCGCTGCTTCTTGCTCAGACCGCTCATGTCGCTGGTGGAGCCGCTCT
TGACACTGTTTGCATCGTCATCTTTACCGCCATTGC
BS01189.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5529-PA | 1635 | B-H1-RA | 818..1635 | 836..19 | 4040 | 99.7 | Minus |
CG5488-PA | 1938 | B-H2-RA | 1129..1310 | 768..587 | 560 | 92.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B-H1-RA | 2719 | CG5529-RA | 1034..1851 | 836..19 | 4060 | 99.8 | Minus |
B-H1-RB | 2724 | CG5529-RB | 1044..1856 | 831..19 | 4035 | 99.8 | Minus |
B-H2-RB | 3142 | CG5488-RB | 1458..1840 | 768..392 | 960 | 83.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17401824..17402410 | 605..19 | 2935 | 100 | Minus |
X | 23542271 | X | 17401464..17401693 | 831..602 | 1120 | 99.1 | Minus |
X | 23542271 | X | 17320925..17321091 | 768..602 | 625 | 91.6 | Minus |
X | 23542271 | X | 17322654..17322873 | 605..392 | 275 | 78 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:36:09 has no hits.
BS01189.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:13 Download gff for
BS01189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-PA | 818..1635 | 19..836 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:53 Download gff for
BS01189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5529-PA | 818..1635 | 19..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:26:29 Download gff for
BS01189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 1034..1851 | 19..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:36 Download gff for
BS01189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 1034..1851 | 19..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:36 Download gff for
BS01189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17401461..17401693 | 602..836 | 97 | -> | Minus |
X | 17401828..17402410 | 19..601 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:26:29 Download gff for
BS01189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17295494..17295726 | 602..836 | 97 | -> | Minus |
arm_X | 17295861..17296443 | 19..601 | 100 | | Minus |
BS01189.5prime Sequence
832 bp (707 high quality bases) assembled on 2005-11-30
> BS01189.5prime
GAAGTTATCAGTCGACATGAAAGACTCGATGAGCATACTCACCCAAACGC
CCAGCGAGCCAAACGCAGCGCATCCCCAGCTGCACCACCACCTCAGTACG
CTGCAGCAGCAGCACCACCAGCACCACCTCCACTACGGCCTGCAGCCACC
GGCGGTGGCTCACAGCATCCATAGCACCACCACCATGTCCTCCGGCGGCA
GCACCACCACCGCCTCGGGCATCGGTAAGCCCAATCGGTCCCGCTTCATG
ATCAACGACATTCTGGCGGGCAGTGCGGCGGCCGCTTTCTACAAGCAGCA
GCAGCATCACCAGCAGTTGCACCACCACAACAACAACAACAATTCGGGCT
CCAGCGGCGGCAGCAGTCCCGCTCACAGCAACAACAACAACAACATTAAT
GGCGATAACTGTGAGGCATCCAATGTTGCTGGCGTCGGTGTGCTGCCATC
TGCCCTGCACCACCCACAACCACATCCGCCCACGCATCCGCACACACATC
CGCATGCGCTAATGCATCCGCACGGCAAGCTGGGGCACTTTCCACCCACC
GCCGGCGGCAATGGGTTAAACGTGGCTCAATATGCGGCGGCCATGCAACA
GCACTATGCCGCTGCTGCTGCCGCGGCTGCTGCGCGCAACAATGCAGCTG
CTGCTGCAGCCGCCGCTGCTGCCGCTGCAGCTGCTGGTGTAGCCGCACCA
CCCGTCGACGGGGGAGTGGATGGCGGGGTGGGGCTGGCGCCACCGGCGGG
CGGCGATCTGGACGACAGCAGCGATTACCACGAGGAGAACGAGGACTGCG
ACAGCGGCAACATGGACGATCACAGCGTTTGT
BS01189.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5529-PA | 1635 | B-H1-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B-H1-RB | 2724 | CG5529-RB | 217..1032 | 17..832 | 4080 | 100 | Plus |
B-H1-RA | 2719 | CG5529-RA | 217..1032 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17397694..17398509 | 17..832 | 4080 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 20:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2407 | 280..395 | 231 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2455 | 294..395 | 188 | 66 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2492 | 294..399 | 188 | 67.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2448 | 294..409 | 184 | 65 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3261..3382 | 276..399 | 183 | 64.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2853 | 169..702 | 164 | 53.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2775..2874 | 289..391 | 147 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2681 | 32..343 | 141 | 51.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1608 | 294..345 | 121 | 72.2 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 951..1009 | 269..327 | 115 | 66.1 | Plus |
BS01189.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:14 Download gff for
BS01189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:54 Download gff for
BS01189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5529-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:52:48 Download gff for
BS01189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 211..1032 | 10..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:07 Download gff for
BS01189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 211..1032 | 10..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:07 Download gff for
BS01189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17397688..17398509 | 10..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:52:48 Download gff for
BS01189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17291721..17292542 | 10..832 | 99 | | Plus |
BS01189.complete Sequence
1669 bp (1669 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634558
> BS01189.complete
GAAGTTATCAGTCGACATGAAAGACTCGATGAGCATACTCACCCAAACGC
CCAGCGAGCCAAACGCAGCGCATCCCCAGCTGCACCACCACCTCAGTACG
CTGCAGCAGCAGCACCACCAGCACCACCTCCACTACGGCCTGCAGCCACC
GGCGGTGGCTCACAGCATCCATAGCACCACCACCATGTCCTCCGGCGGCA
GCACCACCACCGCCTCGGGCATCGGTAAGCCCAATCGGTCCCGCTTCATG
ATCAACGACATTCTGGCGGGCAGTGCGGCGGCCGCTTTCTACAAGCAGCA
GCAGCATCACCAGCAGTTGCACCACCACAACAACAACAACAATTCGGGCT
CCAGCGGCGGCAGCAGTCCCGCTCACAGCAACAACAACAACAACATTAAT
GGCGATAACTGTGAGGCATCCAATGTTGCTGGCGTCGGTGTGCTGCCATC
TGCCCTGCACCACCCACAACCACATCCGCCCACGCATCCGCACACACATC
CGCATGCGCTAATGCATCCGCACGGCAAGCTGGGGCACTTTCCACCCACC
GCCGGCGGCAATGGGTTAAACGTGGCTCAATATGCGGCGGCCATGCAACA
GCACTATGCCGCTGCTGCTGCCGCGGCTGCTGCGCGCAACAATGCAGCTG
CTGCTGCAGCCGCCGCTGCTGCCGCTGCAGCTGCTGGTGTAGCCGCACCA
CCCGTCGACGGGGGAGTGGATGGCGGGGTGGGGCTGGCGCCACCGGCGGG
CGGCGATCTGGACGACAGCAGCGATTACCACGAGGAGAACGAGGACTGCG
ACAGCGGCAACATGGACGATCACAGCGTTTGTAGCAATGGCGGTAAAGAT
GACGATGGCAACAGTGTCAAGAGCGGCTCCACCAGCGACATGAGCGGTCT
GAGCAAGAAGCAGCGAAAGGCGCGTACCGCCTTCACGGATCACCAGCTGC
AGACGCTCGAGAAGTCCTTCGAGCGGCAGAAGTACCTTAGCGTTCAGGAG
CGCCAGGAGCTGGCCCACAAGTTGGATCTGAGCGATTGCCAGGTGAAAAC
TTGGTACCAAAACCGCAGAACCAAATGGAAGCGCCAAACAGCAGTGGGCC
TGGAACTCCTCGCAGAGGCTGGAAACTTCGCGGCCTTTCAGCGACTTTAC
GGCGGATCGCCTTACCTGGGCGCCTGGCCGTATGCGGCCGCTGCCGGCGC
CGCCCACGGAGCCACGCCCCACACGAACATAGACATCTATTACCGTCAAG
CGGCCGCTGCGGCCGCCATGCAGAAGCCACTGCCCTACAACCTATACGCC
GGCGTTCCGTCCGTCGGAGTGGGCGTCGGGGTGGGCGTGGGTCCGGCACC
CTTCTCCCACCTGTCCGCCTCCAGTTCGCTGTCCTCGCTGAGCAGCTACT
ATCAGAGTGCCGCTGCGGCTGCCTCCGCTGCCAATCCGGGCGGACCGCAT
CCGGTAGCGCCACCACCTTCGGTGGGCGGAGGATCTCCGCCCAGTGGCCT
GGTCAAACCGATTCCGGCCCATTCCGCATCCGCCTCGCCGCCACCAAGGC
CACCATCGACGCCGAGTCCAACGCTGAATCCGGGCAGTCCGCCAGGACGA
TCCGTTGACAGCTGTTCCCAGTCGGACGACGAGGATCAGATCCAGGTGTG
ACGAAGCTTTCTAGACCAT
BS01189.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B-H1-RA | 1635 | CG5529-PA | 1..1635 | 17..1651 | 8175 | 100 | Plus |
B-H1-RB | 882 | CG5529-PB | 1..882 | 17..893 | 4300 | 99.4 | Plus |
B-H2-RB | 912 | CG5488-PB | 103..485 | 902..1278 | 880 | 83.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B-H1-RA | 2719 | CG5529-RA | 217..1851 | 17..1651 | 8175 | 100 | Plus |
B-H1-RB | 2724 | CG5529-RB | 217..1856 | 17..1651 | 8090 | 99.7 | Plus |
B-H2-RB | 3142 | CG5488-RB | 1458..1840 | 902..1278 | 880 | 83.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17397694..17398517 | 17..840 | 4120 | 100 | Plus |
X | 23542271 | X | 17401824..17402410 | 1065..1651 | 2935 | 100 | Plus |
X | 23542271 | X | 17401464..17401693 | 839..1068 | 1150 | 100 | Plus |
X | 23542271 | X | 17320925..17321091 | 902..1068 | 625 | 91.6 | Plus |
X | 23542271 | X | 17322654..17322873 | 1065..1278 | 275 | 78 | Plus |
Blast to na_te.dros performed 2014-11-27 10:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2407 | 280..395 | 231 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2455 | 294..395 | 188 | 66 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2492 | 294..399 | 188 | 67.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2448 | 294..409 | 184 | 65 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3261..3382 | 276..399 | 183 | 64.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2853 | 169..702 | 164 | 53.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2681 | 32..343 | 141 | 51.6 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 951..1009 | 269..327 | 115 | 66.1 | Plus |
BS01189.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:31 Download gff for
BS01189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 1..1635 | 17..1651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:33 Download gff for
BS01189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 188..1828 | 10..1651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:37 Download gff for
BS01189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 217..1852 | 17..1653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:32 Download gff for
BS01189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 188..1828 | 10..1651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:37 Download gff for
BS01189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H1-RA | 217..1852 | 17..1653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:37 Download gff for
BS01189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17397694..17398516 | 17..839 | 100 | -> | Plus |
X | 17401465..17401693 | 840..1068 | 100 | -> | Plus |
X | 17401828..17402411 | 1069..1653 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:37 Download gff for
BS01189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17291727..17292549 | 17..839 | 100 | -> | Plus |
arm_X | 17295498..17295726 | 840..1068 | 100 | -> | Plus |
arm_X | 17295861..17296444 | 1069..1653 | 99 | | Plus |
BS01189.pep Sequence
Translation from 16 to 1650
> BS01189.pep
MKDSMSILTQTPSEPNAAHPQLHHHLSTLQQQHHQHHLHYGLQPPAVAHS
IHSTTTMSSGGSTTTASGIGKPNRSRFMINDILAGSAAAAFYKQQQHHQQ
LHHHNNNNNSGSSGGSSPAHSNNNNNINGDNCEASNVAGVGVLPSALHHP
QPHPPTHPHTHPHALMHPHGKLGHFPPTAGGNGLNVAQYAAAMQQHYAAA
AAAAAARNNAAAAAAAAAAAAAAGVAAPPVDGGVDGGVGLAPPAGGDLDD
SSDYHEENEDCDSGNMDDHSVCSNGGKDDDGNSVKSGSTSDMSGLSKKQR
KARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQNR
RTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAAHGAT
PHTNIDIYYRQAAAAAAMQKPLPYNLYAGVPSVGVGVGVGVGPAPFSHLS
ASSSLSSLSSYYQSAAAAASAANPGGPHPVAPPPSVGGGSPPSGLVKPIP
AHSASASPPPRPPSTPSPTLNPGSPPGRSVDSCSQSDDEDQIQV*
BS01189.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B-H1-PA | 544 | CG5529-PA | 1..544 | 1..544 | 2902 | 100 | Plus |
B-H1-PB | 293 | CG5529-PB | 1..275 | 1..275 | 1492 | 100 | Plus |
B-H2-PA | 645 | CG5488-PA | 95..617 | 11..541 | 744 | 39.8 | Plus |
B-H2-PB | 303 | CG5488-PB | 4..275 | 273..541 | 692 | 58 | Plus |
CG11085-PA | 295 | CG11085-PA | 104..289 | 210..424 | 258 | 35.8 | Plus |