Clone BS01189 Report

Search the DGRC for BS01189

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptB-H1-RA
Protein status:BS01189.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01189.3prime Sequence

836 bp (808 high quality bases) assembled on 2005-11-30

> BS01189.3prime
ATGGTCTAGAAAGCTTCGTCACACCTGGATCTGATCCTCGTCGTCCGACT
GGGAACAGCTGTCAACGGATCGTCCTGGCGGACTGCCCGGATTCAGCGTT
GGACTCGGCGTCGATGGTGGCCTTGGTGGCGGCGAGGCGGATGCGGAATG
GGCCGGAATCGGTTTGACCAGGCCACTGGGCGGAGATCCTCCGCCCACCG
AAGGTGGTGGCGCTACCGGATGCGGTCCGCCCGGATTGGCAGCGGAGGCA
GCCGCAGCGGCACTCTGATAGTAGCTGCTCAGCGAGGACAGCGAACTGGA
GGCGGACAGGTGGGAGAAGGGTGCCGGACCCACGCCCACCCCGACGCCCA
CTCCGACGGACGGAACGCCGGCGTATAGGTTGTAGGGCAGTGGCTTCTGC
ATGGCGGCCGCAGCGGCCGCTTGACGGTAATAGATGTCTATGTTCGTGTG
GGGCGTGGCTCCGTGGGCGGCGCCGGCAGCGGCCGCATACGGCCAGGCGC
CCAGGTAAGGCGATCCGCCGTAAAGTCGCTGAAAGGCCGCGAAGTTTCCA
GCCTCTGCGAGGAGTTCCAGGCCCACTGCTGTTTGGCGCTTCCATTTGGT
TCTGCGGTTTTGGTACCAAGTTTTCACCTGGCAATCGCTCAGATCCAACT
TGTGGGCCAGCTCCTGGCGCTCCTGAACGCTAAGGTACTTCTGCCGCTCG
AAGGACTTCTCGAGCGTCTGCAGCTGGTGATCCGTGAAGGCGGTACGCGC
CTTTCGCTGCTTCTTGCTCAGACCGCTCATGTCGCTGGTGGAGCCGCTCT
TGACACTGTTTGCATCGTCATCTTTACCGCCATTGC

BS01189.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5529-PA 1635 B-H1-RA 818..1635 836..19 4040 99.7 Minus
CG5488-PA 1938 B-H2-RA 1129..1310 768..587 560 92.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
B-H1-RA 2719 CG5529-RA 1034..1851 836..19 4060 99.8 Minus
B-H1-RB 2724 CG5529-RB 1044..1856 831..19 4035 99.8 Minus
B-H2-RB 3142 CG5488-RB 1458..1840 768..392 960 83.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17401824..17402410 605..19 2935 100 Minus
X 23542271 X 17401464..17401693 831..602 1120 99.1 Minus
X 23542271 X 17320925..17321091 768..602 625 91.6 Minus
X 23542271 X 17322654..17322873 605..392 275 78 Minus
Blast to na_te.dros performed on 2015-02-10 19:36:09 has no hits.

BS01189.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:13 Download gff for BS01189.3prime
Subject Subject Range Query Range Percent Splice Strand
B-H1-PA 818..1635 19..836 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:53 Download gff for BS01189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5529-PA 818..1635 19..836 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:26:29 Download gff for BS01189.3prime
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 1034..1851 19..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:36 Download gff for BS01189.3prime
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 1034..1851 19..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:36 Download gff for BS01189.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17401461..17401693 602..836 97 -> Minus
X 17401828..17402410 19..601 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:26:29 Download gff for BS01189.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17295494..17295726 602..836 97 -> Minus
arm_X 17295861..17296443 19..601 100   Minus

BS01189.5prime Sequence

832 bp (707 high quality bases) assembled on 2005-11-30

> BS01189.5prime
GAAGTTATCAGTCGACATGAAAGACTCGATGAGCATACTCACCCAAACGC
CCAGCGAGCCAAACGCAGCGCATCCCCAGCTGCACCACCACCTCAGTACG
CTGCAGCAGCAGCACCACCAGCACCACCTCCACTACGGCCTGCAGCCACC
GGCGGTGGCTCACAGCATCCATAGCACCACCACCATGTCCTCCGGCGGCA
GCACCACCACCGCCTCGGGCATCGGTAAGCCCAATCGGTCCCGCTTCATG
ATCAACGACATTCTGGCGGGCAGTGCGGCGGCCGCTTTCTACAAGCAGCA
GCAGCATCACCAGCAGTTGCACCACCACAACAACAACAACAATTCGGGCT
CCAGCGGCGGCAGCAGTCCCGCTCACAGCAACAACAACAACAACATTAAT
GGCGATAACTGTGAGGCATCCAATGTTGCTGGCGTCGGTGTGCTGCCATC
TGCCCTGCACCACCCACAACCACATCCGCCCACGCATCCGCACACACATC
CGCATGCGCTAATGCATCCGCACGGCAAGCTGGGGCACTTTCCACCCACC
GCCGGCGGCAATGGGTTAAACGTGGCTCAATATGCGGCGGCCATGCAACA
GCACTATGCCGCTGCTGCTGCCGCGGCTGCTGCGCGCAACAATGCAGCTG
CTGCTGCAGCCGCCGCTGCTGCCGCTGCAGCTGCTGGTGTAGCCGCACCA
CCCGTCGACGGGGGAGTGGATGGCGGGGTGGGGCTGGCGCCACCGGCGGG
CGGCGATCTGGACGACAGCAGCGATTACCACGAGGAGAACGAGGACTGCG
ACAGCGGCAACATGGACGATCACAGCGTTTGT

BS01189.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5529-PA 1635 B-H1-RA 1..816 17..832 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
B-H1-RB 2724 CG5529-RB 217..1032 17..832 4080 100 Plus
B-H1-RA 2719 CG5529-RA 217..1032 17..832 4080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17397694..17398509 17..832 4080 100 Plus
Blast to na_te.dros performed 2015-02-10 20:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2291..2407 280..395 231 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2353..2455 294..395 188 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2383..2492 294..399 188 67.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2448 294..409 184 65 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3261..3382 276..399 183 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2853 169..702 164 53.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2775..2874 289..391 147 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2368..2681 32..343 141 51.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1555..1608 294..345 121 72.2 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 951..1009 269..327 115 66.1 Plus

BS01189.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:14 Download gff for BS01189.5prime
Subject Subject Range Query Range Percent Splice Strand
B-H1-PA 1..816 17..832 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:10:54 Download gff for BS01189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5529-PA 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:52:48 Download gff for BS01189.5prime
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 211..1032 10..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:07 Download gff for BS01189.5prime
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 211..1032 10..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:07 Download gff for BS01189.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17397688..17398509 10..832 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:52:48 Download gff for BS01189.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17291721..17292542 10..832 99   Plus

BS01189.complete Sequence

1669 bp (1669 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634558

> BS01189.complete
GAAGTTATCAGTCGACATGAAAGACTCGATGAGCATACTCACCCAAACGC
CCAGCGAGCCAAACGCAGCGCATCCCCAGCTGCACCACCACCTCAGTACG
CTGCAGCAGCAGCACCACCAGCACCACCTCCACTACGGCCTGCAGCCACC
GGCGGTGGCTCACAGCATCCATAGCACCACCACCATGTCCTCCGGCGGCA
GCACCACCACCGCCTCGGGCATCGGTAAGCCCAATCGGTCCCGCTTCATG
ATCAACGACATTCTGGCGGGCAGTGCGGCGGCCGCTTTCTACAAGCAGCA
GCAGCATCACCAGCAGTTGCACCACCACAACAACAACAACAATTCGGGCT
CCAGCGGCGGCAGCAGTCCCGCTCACAGCAACAACAACAACAACATTAAT
GGCGATAACTGTGAGGCATCCAATGTTGCTGGCGTCGGTGTGCTGCCATC
TGCCCTGCACCACCCACAACCACATCCGCCCACGCATCCGCACACACATC
CGCATGCGCTAATGCATCCGCACGGCAAGCTGGGGCACTTTCCACCCACC
GCCGGCGGCAATGGGTTAAACGTGGCTCAATATGCGGCGGCCATGCAACA
GCACTATGCCGCTGCTGCTGCCGCGGCTGCTGCGCGCAACAATGCAGCTG
CTGCTGCAGCCGCCGCTGCTGCCGCTGCAGCTGCTGGTGTAGCCGCACCA
CCCGTCGACGGGGGAGTGGATGGCGGGGTGGGGCTGGCGCCACCGGCGGG
CGGCGATCTGGACGACAGCAGCGATTACCACGAGGAGAACGAGGACTGCG
ACAGCGGCAACATGGACGATCACAGCGTTTGTAGCAATGGCGGTAAAGAT
GACGATGGCAACAGTGTCAAGAGCGGCTCCACCAGCGACATGAGCGGTCT
GAGCAAGAAGCAGCGAAAGGCGCGTACCGCCTTCACGGATCACCAGCTGC
AGACGCTCGAGAAGTCCTTCGAGCGGCAGAAGTACCTTAGCGTTCAGGAG
CGCCAGGAGCTGGCCCACAAGTTGGATCTGAGCGATTGCCAGGTGAAAAC
TTGGTACCAAAACCGCAGAACCAAATGGAAGCGCCAAACAGCAGTGGGCC
TGGAACTCCTCGCAGAGGCTGGAAACTTCGCGGCCTTTCAGCGACTTTAC
GGCGGATCGCCTTACCTGGGCGCCTGGCCGTATGCGGCCGCTGCCGGCGC
CGCCCACGGAGCCACGCCCCACACGAACATAGACATCTATTACCGTCAAG
CGGCCGCTGCGGCCGCCATGCAGAAGCCACTGCCCTACAACCTATACGCC
GGCGTTCCGTCCGTCGGAGTGGGCGTCGGGGTGGGCGTGGGTCCGGCACC
CTTCTCCCACCTGTCCGCCTCCAGTTCGCTGTCCTCGCTGAGCAGCTACT
ATCAGAGTGCCGCTGCGGCTGCCTCCGCTGCCAATCCGGGCGGACCGCAT
CCGGTAGCGCCACCACCTTCGGTGGGCGGAGGATCTCCGCCCAGTGGCCT
GGTCAAACCGATTCCGGCCCATTCCGCATCCGCCTCGCCGCCACCAAGGC
CACCATCGACGCCGAGTCCAACGCTGAATCCGGGCAGTCCGCCAGGACGA
TCCGTTGACAGCTGTTCCCAGTCGGACGACGAGGATCAGATCCAGGTGTG
ACGAAGCTTTCTAGACCAT

BS01189.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
B-H1-RA 1635 CG5529-PA 1..1635 17..1651 8175 100 Plus
B-H1-RB 882 CG5529-PB 1..882 17..893 4300 99.4 Plus
B-H2-RB 912 CG5488-PB 103..485 902..1278 880 83.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
B-H1-RA 2719 CG5529-RA 217..1851 17..1651 8175 100 Plus
B-H1-RB 2724 CG5529-RB 217..1856 17..1651 8090 99.7 Plus
B-H2-RB 3142 CG5488-RB 1458..1840 902..1278 880 83.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17397694..17398517 17..840 4120 100 Plus
X 23542271 X 17401824..17402410 1065..1651 2935 100 Plus
X 23542271 X 17401464..17401693 839..1068 1150 100 Plus
X 23542271 X 17320925..17321091 902..1068 625 91.6 Plus
X 23542271 X 17322654..17322873 1065..1278 275 78 Plus
Blast to na_te.dros performed 2014-11-27 10:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2291..2407 280..395 231 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2353..2455 294..395 188 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2383..2492 294..399 188 67.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2448 294..409 184 65 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3261..3382 276..399 183 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2853 169..702 164 53.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2368..2681 32..343 141 51.6 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 951..1009 269..327 115 66.1 Plus

BS01189.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:31 Download gff for BS01189.complete
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 1..1635 17..1651 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:33 Download gff for BS01189.complete
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 188..1828 10..1651 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:37 Download gff for BS01189.complete
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 217..1852 17..1653 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:32 Download gff for BS01189.complete
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 188..1828 10..1651 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:37 Download gff for BS01189.complete
Subject Subject Range Query Range Percent Splice Strand
B-H1-RA 217..1852 17..1653 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:37 Download gff for BS01189.complete
Subject Subject Range Query Range Percent Splice Strand
X 17397694..17398516 17..839 100 -> Plus
X 17401465..17401693 840..1068 100 -> Plus
X 17401828..17402411 1069..1653 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:37 Download gff for BS01189.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17291727..17292549 17..839 100 -> Plus
arm_X 17295498..17295726 840..1068 100 -> Plus
arm_X 17295861..17296444 1069..1653 99   Plus

BS01189.pep Sequence

Translation from 16 to 1650

> BS01189.pep
MKDSMSILTQTPSEPNAAHPQLHHHLSTLQQQHHQHHLHYGLQPPAVAHS
IHSTTTMSSGGSTTTASGIGKPNRSRFMINDILAGSAAAAFYKQQQHHQQ
LHHHNNNNNSGSSGGSSPAHSNNNNNINGDNCEASNVAGVGVLPSALHHP
QPHPPTHPHTHPHALMHPHGKLGHFPPTAGGNGLNVAQYAAAMQQHYAAA
AAAAAARNNAAAAAAAAAAAAAAGVAAPPVDGGVDGGVGLAPPAGGDLDD
SSDYHEENEDCDSGNMDDHSVCSNGGKDDDGNSVKSGSTSDMSGLSKKQR
KARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQNR
RTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAAHGAT
PHTNIDIYYRQAAAAAAMQKPLPYNLYAGVPSVGVGVGVGVGPAPFSHLS
ASSSLSSLSSYYQSAAAAASAANPGGPHPVAPPPSVGGGSPPSGLVKPIP
AHSASASPPPRPPSTPSPTLNPGSPPGRSVDSCSQSDDEDQIQV*

BS01189.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
B-H1-PA 544 CG5529-PA 1..544 1..544 2902 100 Plus
B-H1-PB 293 CG5529-PB 1..275 1..275 1492 100 Plus
B-H2-PA 645 CG5488-PA 95..617 11..541 744 39.8 Plus
B-H2-PB 303 CG5488-PB 4..275 273..541 692 58 Plus
CG11085-PA 295 CG11085-PA 104..289 210..424 258 35.8 Plus