Clone Sequence Records
BS01196.3prime Sequence
909 bp (824 high quality bases) assembled on 2005-11-30
> BS01196.3prime
ATGGTCTAGAAAGCTGCGTCACCTGAGCAGGCAGAGCTTGCACTGGTAGG
GCTTCTCGCCACTGTGGATTCGCAGGTGCTTGGTGAGGGTGCTGCTGTCC
GAGAAGGACTTCTTGCACGAGGAGCAGCGGTACGGCCGCTCGCCGGAGTG
GGTGCGCATGTGCGTGGTGACACTGGAACTCTGCGAGAATCTCCGGTCGC
AGATGGGGCAGCGGAACGGCTTCTGGCCGGTGTGTGTGCGTACGTGAGCC
GTCAGGTTGGCTGCCTGCGAGAAGCTCTTGTTGCAGTCGGGGCATCGATA
GGGTCTTTCGCCGGAATGGGTCCGCAGATGGGTCTTGAGCGTGCTGGGCC
GGGCATATGTCTTTCCGCACAACCGGCATAGATTGGGTTTCATCTCGCCG
CCACTGCTGCCCTCATCGCCGTCCAGATCCTCGTTGCTATCCTCCTCGTC
CTCGAAGGCGGATAGACTTAAGCCCAGGGCGGCTGCCTGATAGCTGGTGG
GACTTTTGTGGGGCGGTGTGTATCCCTGATTGCCCACCCCCGTGGGATAG
TAGCCAGCCAAAGAGGAGTTGGCCGGCGGCGATGGCGACTCCTTTTCGCC
CACCGTCAGCGGTGGCAGGGCACCCAGACCCGTGGGAGCCGGTGCCCGAA
AATCCGCTGTAAAGGAATATGTGGCCGAGGCAGGATAGTGACCGGGACTC
AGCAGCGGTGGGTATAGCACATTTACCGCCGCTGCTGCTGCTGCCGCCGA
GGTGGAGTTACTGGGTGGCGTCCAGTTCATCTGGGAGCACTGCATTGGCA
CGCCGCCTGCATCACCGGCACCGTAGCCATGGTGCATGGTCATGTTCATG
CTGACGTTCACGCTCATGCTGGGATACATGGCTGCCGCCCGAGGAAGAGG
TGGTGCGGC
BS01196.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7672-PB | 1674 | gl-RB | 784..1674 | 909..19 | 4405 | 99.7 | Minus |
CG7672-PA | 1815 | gl-RA | 784..1670 | 909..23 | 4385 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gl-RB | 3399 | CG7672-RB | 1097..1987 | 909..19 | 4425 | 99.8 | Minus |
gl-RC | 3003 | CG7672-RC | 1097..1983 | 909..23 | 4405 | 99.8 | Minus |
gl-RA | 3003 | CG7672-RA | 1097..1983 | 909..23 | 4405 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18369339..18370229 | 19..909 | 4425 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:04:42 has no hits.
BS01196.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:21 Download gff for
BS01196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7672-PB | 784..1674 | 19..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:04 Download gff for
BS01196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7672-PB | 784..1674 | 19..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:33:39 Download gff for
BS01196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gl-RB | 1097..1987 | 19..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:10 Download gff for
BS01196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gl-RB | 1097..1987 | 19..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:10 Download gff for
BS01196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18369339..18370229 | 19..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:33:39 Download gff for
BS01196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14195061..14195951 | 19..909 | 99 | | Plus |
BS01196.5prime Sequence
900 bp (811 high quality bases) assembled on 2005-11-30
> BS01196.5prime
GAAGTTATCAGTCGACATGGGATTGTTATATAAGGGTTCCAAACTCCTGA
ACACAATTCTGGATTCCCTGGAAGATCAAGAGGGTGGAGCTATGTACATA
TCGTGCGATGTCTCAAACGGCGGTCCTGTGGAACCAGAGACGGGCTATGT
GCCCAACAATCCCCTGTTCGGCCTGGCGCTGGACAGCCCTCAGCAAGAGT
GCGCCGCTTCCTGCGTCGGCTGCCTATCCTGCCAGGGCAGCACCGCCCTG
CCCATCTCCTCGCTCACCAGCAGCGACTTCGACTGCGGCGGCTGTTTCGA
TCCCACGATTGGAGTGGGCGTGGGCATCGGTGGCGGCCACATCCAGATCA
GCACGACACCACCGGCGAGCAGCGGCAACGGGAGCAGCAACAACGGTGCC
GGAGGAGGCTCCTCGGGTAATCACGGCTACTGGAGCACCGACGAGATGGC
TTCCACATTTCCCGGCCTACCGCCGCTGGACATCGATCCGCTGCCCAGCC
TGTTCCCATTCTCGCCCTGCGGCGCTTCCTACAACTTTGCCGCCGGCAAT
CCGCACCAGGCCGCCTCACTCTCCTACACAGTGCATCCGCACCAGATGCT
CATTTCGCCGAACTCCCACAATCATGGCCAGATGCACTCGCAGCACCAGC
AGCACCAGCACCAGCAATCCCAAGTCCAGGCATCGCACGTAGGCAACTCT
CTCCTCCAAAGCAGTGGTGGCAACAATATCGGCAGTAATGGTAGTGCCGG
AGGAGTGGCCAACGCTGCCAGTTGCTACTATGAAACCAGTGCTGGAACGG
CCGCACCACCTCCTCCCTCGGCGGCAGCCATGTATCCCAGCATGAGCGTG
AACGTCAGCATGAACATGACCATGCACCATGGCTACGGTGCCGGTGATGC
BS01196.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7672-PA | 1815 | gl-RA | 1..884 | 17..900 | 4370 | 99.7 | Plus |
CG7672-PB | 1674 | gl-RB | 1..884 | 17..900 | 4370 | 99.7 | Plus |
CG1133-PA | 1830 | opa-RA | 1407..1433 | 640..666 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:38:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gl-RC | 3003 | CG7672-RC | 313..1197 | 16..900 | 4395 | 99.8 | Plus |
gl-RB | 3399 | CG7672-RB | 313..1197 | 16..900 | 4395 | 99.8 | Plus |
gl-RA | 3003 | CG7672-RA | 313..1197 | 16..900 | 4395 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18370129..18370838 | 900..191 | 3520 | 99.7 | Minus |
3R | 32079331 | 3R | 18371319..18371450 | 193..62 | 660 | 100 | Minus |
3R | 32079331 | 3R | 18371733..18371779 | 62..16 | 235 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 11:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1577 | 617..667 | 120 | 70.6 | Plus |
BS01196.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:22 Download gff for
BS01196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7672-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:05 Download gff for
BS01196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7672-PB | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:18:39 Download gff for
BS01196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gl-RA | 307..1197 | 8..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:59:43 Download gff for
BS01196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gl-RA | 307..1197 | 8..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:59:43 Download gff for
BS01196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18370129..18370835 | 194..900 | 99 | <- | Minus |
3R | 18371319..18371449 | 63..193 | 100 | <- | Minus |
3R | 18371733..18371785 | 8..62 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:18:39 Download gff for
BS01196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14195851..14196557 | 194..900 | 99 | <- | Minus |
arm_3R | 14197041..14197171 | 63..193 | 100 | <- | Minus |
arm_3R | 14197455..14197507 | 8..62 | 94 | | Minus |
BS01196.complete Sequence
1708 bp assembled on 2009-02-12
> BS01196.complete
GAAGTTATCAGTCGACATGGGATTGTTATATAAGGGTTCCAAACTCCTGA
ACACAATTCTGGATTCCCTGGAAGATCAAGAGGGTGGAGCTATGTACATA
TCGTGCGATGTCTCAAACGGCGGTCCTGTGGAACCAGAGACGGGCTATGT
GCCCAACAATCCCCTGTTCGGCCTGGCGCTGGACAGCCCTCAGCAAGAGT
GCGCCGCTTCCTGCGTCGGCTGCCTATCCTGCCAGGGCAGCACCGCCCTG
CCCATCTCCTCGCTCACCAGCAGCGACTTCGACTGCGGCGGCTGTTTCGA
TCCCACGATTGGAGTGGGCGTGGGCATCGGTGGCGGCCACATCCAGATCA
GCACGACACCACCGGCGAGCAGCGGCAACGGGAGCAGCAACAACGGTGCC
GGAGGAGGCTCCTCGGGTAATCACGGCTACTGGAGCACCGACGAGATGGC
TTCCACATTTCCCGGCCTACCGCCGCTGGACATCGATCCGCTGCCCAGCC
TGTTCCCATTCTCGCCCTGCGGCGCTTCCTACAACTTTGCCGCCGGCAAT
CCGCACCAGGCCGCCTCACTCTCCTACACAGTGCATCCGCACCAGATGCT
CATTTCGCCGAACTCCCACAATCATGGCCAGATGCACTCGCAGCACCAGC
AGCACCAGCACCAGCAATCCCAAGTCCAGGCATCGCACGTAGGCAACTCT
CTCCTCCAAAGCAGTGGTGGCAACAATATCGGCAGTAATGGTAGTGCCGG
AGGAGTGGCCAACGCTGCCAGTTGCTACTATGAAACCAGTGCTGGAACGG
CCGCACCACCTCCTCCTCCGGCGGCAGCCATGTATCCCAGCATGAGCGTG
AACGTCAGCATGAACATGACCATGCACCATGGCTACGGTGCCGGTGATGC
AGGCGGCGTGCCAATGCAGTGCTCCCAGATGAACTGGACGCCACCCAGTA
ACTCCACCTCGGCGGCAGCAGCAGCAGCGGCGGTAAATGTGCTATACCCA
CCGCTGCTGAGTCCCGGTCACTATCCTGCCTCGGCCACATATTCCTTTAC
AGCGGATTTTCGGGCACCGGCTCCCACGGGTCTGGGTGCCCTGCCACCGC
TGACGGTGGGCGAAAAGGAGTCGCCATCGCCGCCGGCCAACTCCTCTTTG
GCTGGCTACTATCCCACGGGGGTGGGCAATCAGGGATACACACCGCCCCA
CAAAAGTCCCACCAGCTATCAGGCAGCCGCCCTGGGCTTAAGTCTATCCG
CCTTCGAGGACGAGGAGGATAGCAACGAGGATCTGGACGGCGATGAGGGC
AGCAGTGGCGGCGAGATGAAACCCAATCTATGCCGGTTGTGCGGAAAGAC
ATATGCCCGGCCCAGCACGCTCAAGACCCATCTGCGGACCCATTCCGGCG
AAAGACCCTATCGATGCCCCGACTGCAACAAGAGCTTCTCGCAGGCAGCC
AACCTGACGGCTCACGTACGCACACACACCGGCCAGAAGCCGTTCCGCTG
CCCCATCTGCGACCGGAGATTCTCGCAGAGTTCCAGTGTCACCACGCACA
TGCGCACCCACTCCGGCGAGCGGCCGTACCGCTGCTCCTCGTGCAAGAAG
TCCTTCTCGGACAGCAGCACCCTCACCAAGCACCTGCGAATCCACAGTGG
CGAGAAGCCCTACCAGTGCAAGCTCTGCCTGCTCAGGTGACGCAGCTTTC
TAGACCAT
BS01196.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gl-RB | 1674 | CG7672-PB | 1..1674 | 17..1690 | 8370 | 100 | Plus |
gl-RC | 2040 | CG7672-PC | 1..1670 | 17..1686 | 8350 | 100 | Plus |
gl-RA | 1815 | CG7672-PA | 1..1670 | 17..1686 | 8350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gl-RB | 3399 | CG7672-RB | 313..1987 | 16..1690 | 8375 | 100 | Plus |
gl-RC | 3003 | CG7672-RC | 313..1983 | 16..1686 | 8355 | 100 | Plus |
gl-RA | 3003 | CG7672-RA | 313..1983 | 16..1686 | 8355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18369339..18370838 | 1690..191 | 7500 | 100 | Minus |
3R | 32079331 | 3R | 18371319..18371450 | 193..62 | 660 | 100 | Minus |
3R | 32079331 | 3R | 18371733..18371779 | 62..16 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1577 | 617..667 | 120 | 70.6 | Plus |
BS01196.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:34 Download gff for
BS01196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gl-RB | 293..1967 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:59 Download gff for
BS01196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gl-RB | 314..1988 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:39 Download gff for
BS01196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gl-RB | 314..1988 | 17..1692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:39 Download gff for
BS01196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18369338..18370835 | 194..1692 | 99 | <- | Minus |
3R | 18371319..18371449 | 63..193 | 100 | <- | Minus |
3R | 18371733..18371778 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:59 Download gff for
BS01196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14195060..14196557 | 194..1692 | 99 | <- | Minus |
arm_3R | 14197041..14197171 | 63..193 | 100 | <- | Minus |
arm_3R | 14197455..14197500 | 17..62 | 100 | | Minus |
BS01196.pep Sequence
Translation from 16 to 1689
> BS01196.pep
MGLLYKGSKLLNTILDSLEDQEGGAMYISCDVSNGGPVEPETGYVPNNPL
FGLALDSPQQECAASCVGCLSCQGSTALPISSLTSSDFDCGGCFDPTIGV
GVGIGGGHIQISTTPPASSGNGSSNNGAGGGSSGNHGYWSTDEMASTFPG
LPPLDIDPLPSLFPFSPCGASYNFAAGNPHQAASLSYTVHPHQMLISPNS
HNHGQMHSQHQQHQHQQSQVQASHVGNSLLQSSGGNNIGSNGSAGGVANA
ASCYYETSAGTAAPPPPPAAAMYPSMSVNVSMNMTMHHGYGAGDAGGVPM
QCSQMNWTPPSNSTSAAAAAAAVNVLYPPLLSPGHYPASATYSFTADFRA
PAPTGLGALPPLTVGEKESPSPPANSSLAGYYPTGVGNQGYTPPHKSPTS
YQAAALGLSLSAFEDEEDSNEDLDGDEGSSGGEMKPNLCRLCGKTYARPS
TLKTHLRTHSGERPYRCPDCNKSFSQAANLTAHVRTHTGQKPFRCPICDR
RFSQSSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQ
CKLCLLR*
BS01196.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gl-PC | 679 | CG7672-PC | 1..557 | 1..557 | 3020 | 100 | Plus |
gl-PB | 557 | CG7672-PB | 1..557 | 1..557 | 3020 | 100 | Plus |
gl-PA | 604 | CG7672-PA | 1..557 | 1..557 | 3020 | 100 | Plus |
Kr-PB | 502 | CG3340-PB | 52..342 | 310..557 | 370 | 29.9 | Plus |
Kr-PA | 502 | CG3340-PA | 52..342 | 310..557 | 370 | 29.9 | Plus |
Kr-PB | 502 | CG3340-PB | 59..352 | 248..539 | 299 | 29.2 | Plus |