Clone BS01196 Report

Search the DGRC for BS01196

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:11
Well:96
Vector:pDNR-Dual
Associated Gene/Transcriptgl-RB
Protein status:BS01196.pep: full length peptide match
Sequenced Size:1708

Clone Sequence Records

BS01196.3prime Sequence

909 bp (824 high quality bases) assembled on 2005-11-30

> BS01196.3prime
ATGGTCTAGAAAGCTGCGTCACCTGAGCAGGCAGAGCTTGCACTGGTAGG
GCTTCTCGCCACTGTGGATTCGCAGGTGCTTGGTGAGGGTGCTGCTGTCC
GAGAAGGACTTCTTGCACGAGGAGCAGCGGTACGGCCGCTCGCCGGAGTG
GGTGCGCATGTGCGTGGTGACACTGGAACTCTGCGAGAATCTCCGGTCGC
AGATGGGGCAGCGGAACGGCTTCTGGCCGGTGTGTGTGCGTACGTGAGCC
GTCAGGTTGGCTGCCTGCGAGAAGCTCTTGTTGCAGTCGGGGCATCGATA
GGGTCTTTCGCCGGAATGGGTCCGCAGATGGGTCTTGAGCGTGCTGGGCC
GGGCATATGTCTTTCCGCACAACCGGCATAGATTGGGTTTCATCTCGCCG
CCACTGCTGCCCTCATCGCCGTCCAGATCCTCGTTGCTATCCTCCTCGTC
CTCGAAGGCGGATAGACTTAAGCCCAGGGCGGCTGCCTGATAGCTGGTGG
GACTTTTGTGGGGCGGTGTGTATCCCTGATTGCCCACCCCCGTGGGATAG
TAGCCAGCCAAAGAGGAGTTGGCCGGCGGCGATGGCGACTCCTTTTCGCC
CACCGTCAGCGGTGGCAGGGCACCCAGACCCGTGGGAGCCGGTGCCCGAA
AATCCGCTGTAAAGGAATATGTGGCCGAGGCAGGATAGTGACCGGGACTC
AGCAGCGGTGGGTATAGCACATTTACCGCCGCTGCTGCTGCTGCCGCCGA
GGTGGAGTTACTGGGTGGCGTCCAGTTCATCTGGGAGCACTGCATTGGCA
CGCCGCCTGCATCACCGGCACCGTAGCCATGGTGCATGGTCATGTTCATG
CTGACGTTCACGCTCATGCTGGGATACATGGCTGCCGCCCGAGGAAGAGG
TGGTGCGGC

BS01196.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7672-PB 1674 gl-RB 784..1674 909..19 4405 99.7 Minus
CG7672-PA 1815 gl-RA 784..1670 909..23 4385 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
gl-RB 3399 CG7672-RB 1097..1987 909..19 4425 99.8 Minus
gl-RC 3003 CG7672-RC 1097..1983 909..23 4405 99.8 Minus
gl-RA 3003 CG7672-RA 1097..1983 909..23 4405 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18369339..18370229 19..909 4425 99.8 Plus
Blast to na_te.dros performed on 2015-02-10 23:04:42 has no hits.

BS01196.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:21 Download gff for BS01196.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7672-PB 784..1674 19..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:04 Download gff for BS01196.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7672-PB 784..1674 19..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:33:39 Download gff for BS01196.3prime
Subject Subject Range Query Range Percent Splice Strand
gl-RB 1097..1987 19..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:10 Download gff for BS01196.3prime
Subject Subject Range Query Range Percent Splice Strand
gl-RB 1097..1987 19..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:10 Download gff for BS01196.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18369339..18370229 19..909 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:33:39 Download gff for BS01196.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14195061..14195951 19..909 99   Plus

BS01196.5prime Sequence

900 bp (811 high quality bases) assembled on 2005-11-30

> BS01196.5prime
GAAGTTATCAGTCGACATGGGATTGTTATATAAGGGTTCCAAACTCCTGA
ACACAATTCTGGATTCCCTGGAAGATCAAGAGGGTGGAGCTATGTACATA
TCGTGCGATGTCTCAAACGGCGGTCCTGTGGAACCAGAGACGGGCTATGT
GCCCAACAATCCCCTGTTCGGCCTGGCGCTGGACAGCCCTCAGCAAGAGT
GCGCCGCTTCCTGCGTCGGCTGCCTATCCTGCCAGGGCAGCACCGCCCTG
CCCATCTCCTCGCTCACCAGCAGCGACTTCGACTGCGGCGGCTGTTTCGA
TCCCACGATTGGAGTGGGCGTGGGCATCGGTGGCGGCCACATCCAGATCA
GCACGACACCACCGGCGAGCAGCGGCAACGGGAGCAGCAACAACGGTGCC
GGAGGAGGCTCCTCGGGTAATCACGGCTACTGGAGCACCGACGAGATGGC
TTCCACATTTCCCGGCCTACCGCCGCTGGACATCGATCCGCTGCCCAGCC
TGTTCCCATTCTCGCCCTGCGGCGCTTCCTACAACTTTGCCGCCGGCAAT
CCGCACCAGGCCGCCTCACTCTCCTACACAGTGCATCCGCACCAGATGCT
CATTTCGCCGAACTCCCACAATCATGGCCAGATGCACTCGCAGCACCAGC
AGCACCAGCACCAGCAATCCCAAGTCCAGGCATCGCACGTAGGCAACTCT
CTCCTCCAAAGCAGTGGTGGCAACAATATCGGCAGTAATGGTAGTGCCGG
AGGAGTGGCCAACGCTGCCAGTTGCTACTATGAAACCAGTGCTGGAACGG
CCGCACCACCTCCTCCCTCGGCGGCAGCCATGTATCCCAGCATGAGCGTG
AACGTCAGCATGAACATGACCATGCACCATGGCTACGGTGCCGGTGATGC

BS01196.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7672-PA 1815 gl-RA 1..884 17..900 4370 99.7 Plus
CG7672-PB 1674 gl-RB 1..884 17..900 4370 99.7 Plus
CG1133-PA 1830 opa-RA 1407..1433 640..666 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
gl-RC 3003 CG7672-RC 313..1197 16..900 4395 99.8 Plus
gl-RB 3399 CG7672-RB 313..1197 16..900 4395 99.8 Plus
gl-RA 3003 CG7672-RA 313..1197 16..900 4395 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18370129..18370838 900..191 3520 99.7 Minus
3R 32079331 3R 18371319..18371450 193..62 660 100 Minus
3R 32079331 3R 18371733..18371779 62..16 235 100 Minus
Blast to na_te.dros performed 2015-02-11 11:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1527..1577 617..667 120 70.6 Plus

BS01196.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:22 Download gff for BS01196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7672-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:05 Download gff for BS01196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7672-PB 1..884 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:18:39 Download gff for BS01196.5prime
Subject Subject Range Query Range Percent Splice Strand
gl-RA 307..1197 8..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:59:43 Download gff for BS01196.5prime
Subject Subject Range Query Range Percent Splice Strand
gl-RA 307..1197 8..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:59:43 Download gff for BS01196.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18370129..18370835 194..900 99 <- Minus
3R 18371319..18371449 63..193 100 <- Minus
3R 18371733..18371785 8..62 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:18:39 Download gff for BS01196.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14195851..14196557 194..900 99 <- Minus
arm_3R 14197041..14197171 63..193 100 <- Minus
arm_3R 14197455..14197507 8..62 94   Minus

BS01196.complete Sequence

1708 bp assembled on 2009-02-12

> BS01196.complete
GAAGTTATCAGTCGACATGGGATTGTTATATAAGGGTTCCAAACTCCTGA
ACACAATTCTGGATTCCCTGGAAGATCAAGAGGGTGGAGCTATGTACATA
TCGTGCGATGTCTCAAACGGCGGTCCTGTGGAACCAGAGACGGGCTATGT
GCCCAACAATCCCCTGTTCGGCCTGGCGCTGGACAGCCCTCAGCAAGAGT
GCGCCGCTTCCTGCGTCGGCTGCCTATCCTGCCAGGGCAGCACCGCCCTG
CCCATCTCCTCGCTCACCAGCAGCGACTTCGACTGCGGCGGCTGTTTCGA
TCCCACGATTGGAGTGGGCGTGGGCATCGGTGGCGGCCACATCCAGATCA
GCACGACACCACCGGCGAGCAGCGGCAACGGGAGCAGCAACAACGGTGCC
GGAGGAGGCTCCTCGGGTAATCACGGCTACTGGAGCACCGACGAGATGGC
TTCCACATTTCCCGGCCTACCGCCGCTGGACATCGATCCGCTGCCCAGCC
TGTTCCCATTCTCGCCCTGCGGCGCTTCCTACAACTTTGCCGCCGGCAAT
CCGCACCAGGCCGCCTCACTCTCCTACACAGTGCATCCGCACCAGATGCT
CATTTCGCCGAACTCCCACAATCATGGCCAGATGCACTCGCAGCACCAGC
AGCACCAGCACCAGCAATCCCAAGTCCAGGCATCGCACGTAGGCAACTCT
CTCCTCCAAAGCAGTGGTGGCAACAATATCGGCAGTAATGGTAGTGCCGG
AGGAGTGGCCAACGCTGCCAGTTGCTACTATGAAACCAGTGCTGGAACGG
CCGCACCACCTCCTCCTCCGGCGGCAGCCATGTATCCCAGCATGAGCGTG
AACGTCAGCATGAACATGACCATGCACCATGGCTACGGTGCCGGTGATGC
AGGCGGCGTGCCAATGCAGTGCTCCCAGATGAACTGGACGCCACCCAGTA
ACTCCACCTCGGCGGCAGCAGCAGCAGCGGCGGTAAATGTGCTATACCCA
CCGCTGCTGAGTCCCGGTCACTATCCTGCCTCGGCCACATATTCCTTTAC
AGCGGATTTTCGGGCACCGGCTCCCACGGGTCTGGGTGCCCTGCCACCGC
TGACGGTGGGCGAAAAGGAGTCGCCATCGCCGCCGGCCAACTCCTCTTTG
GCTGGCTACTATCCCACGGGGGTGGGCAATCAGGGATACACACCGCCCCA
CAAAAGTCCCACCAGCTATCAGGCAGCCGCCCTGGGCTTAAGTCTATCCG
CCTTCGAGGACGAGGAGGATAGCAACGAGGATCTGGACGGCGATGAGGGC
AGCAGTGGCGGCGAGATGAAACCCAATCTATGCCGGTTGTGCGGAAAGAC
ATATGCCCGGCCCAGCACGCTCAAGACCCATCTGCGGACCCATTCCGGCG
AAAGACCCTATCGATGCCCCGACTGCAACAAGAGCTTCTCGCAGGCAGCC
AACCTGACGGCTCACGTACGCACACACACCGGCCAGAAGCCGTTCCGCTG
CCCCATCTGCGACCGGAGATTCTCGCAGAGTTCCAGTGTCACCACGCACA
TGCGCACCCACTCCGGCGAGCGGCCGTACCGCTGCTCCTCGTGCAAGAAG
TCCTTCTCGGACAGCAGCACCCTCACCAAGCACCTGCGAATCCACAGTGG
CGAGAAGCCCTACCAGTGCAAGCTCTGCCTGCTCAGGTGACGCAGCTTTC
TAGACCAT

BS01196.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
gl-RB 1674 CG7672-PB 1..1674 17..1690 8370 100 Plus
gl-RC 2040 CG7672-PC 1..1670 17..1686 8350 100 Plus
gl-RA 1815 CG7672-PA 1..1670 17..1686 8350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
gl-RB 3399 CG7672-RB 313..1987 16..1690 8375 100 Plus
gl-RC 3003 CG7672-RC 313..1983 16..1686 8355 100 Plus
gl-RA 3003 CG7672-RA 313..1983 16..1686 8355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18369339..18370838 1690..191 7500 100 Minus
3R 32079331 3R 18371319..18371450 193..62 660 100 Minus
3R 32079331 3R 18371733..18371779 62..16 235 100 Minus
Blast to na_te.dros performed 2014-11-27 08:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1527..1577 617..667 120 70.6 Plus

BS01196.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:34 Download gff for BS01196.complete
Subject Subject Range Query Range Percent Splice Strand
gl-RB 293..1967 17..1692 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:59 Download gff for BS01196.complete
Subject Subject Range Query Range Percent Splice Strand
gl-RB 314..1988 17..1692 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:39 Download gff for BS01196.complete
Subject Subject Range Query Range Percent Splice Strand
gl-RB 314..1988 17..1692 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:39 Download gff for BS01196.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18369338..18370835 194..1692 99 <- Minus
3R 18371319..18371449 63..193 100 <- Minus
3R 18371733..18371778 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:59 Download gff for BS01196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14195060..14196557 194..1692 99 <- Minus
arm_3R 14197041..14197171 63..193 100 <- Minus
arm_3R 14197455..14197500 17..62 100   Minus

BS01196.pep Sequence

Translation from 16 to 1689

> BS01196.pep
MGLLYKGSKLLNTILDSLEDQEGGAMYISCDVSNGGPVEPETGYVPNNPL
FGLALDSPQQECAASCVGCLSCQGSTALPISSLTSSDFDCGGCFDPTIGV
GVGIGGGHIQISTTPPASSGNGSSNNGAGGGSSGNHGYWSTDEMASTFPG
LPPLDIDPLPSLFPFSPCGASYNFAAGNPHQAASLSYTVHPHQMLISPNS
HNHGQMHSQHQQHQHQQSQVQASHVGNSLLQSSGGNNIGSNGSAGGVANA
ASCYYETSAGTAAPPPPPAAAMYPSMSVNVSMNMTMHHGYGAGDAGGVPM
QCSQMNWTPPSNSTSAAAAAAAVNVLYPPLLSPGHYPASATYSFTADFRA
PAPTGLGALPPLTVGEKESPSPPANSSLAGYYPTGVGNQGYTPPHKSPTS
YQAAALGLSLSAFEDEEDSNEDLDGDEGSSGGEMKPNLCRLCGKTYARPS
TLKTHLRTHSGERPYRCPDCNKSFSQAANLTAHVRTHTGQKPFRCPICDR
RFSQSSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQ
CKLCLLR*

BS01196.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
gl-PC 679 CG7672-PC 1..557 1..557 3020 100 Plus
gl-PB 557 CG7672-PB 1..557 1..557 3020 100 Plus
gl-PA 604 CG7672-PA 1..557 1..557 3020 100 Plus
Kr-PB 502 CG3340-PB 52..342 310..557 370 29.9 Plus
Kr-PA 502 CG3340-PA 52..342 310..557 370 29.9 Plus
Kr-PB 502 CG3340-PB 59..352 248..539 299 29.2 Plus