Clone Sequence Records
BS01208.3prime Sequence
934 bp (804 high quality bases) assembled on 2005-11-29
> BS01208.3prime
ATGGTCTAGAAAGCTTCTAACCCGAATAGTCATTGGCAATAGCTGCGACA
TCGGCATCGTCCCGGAACATTTGCGCCACTTGGGCGCTGGGCAGGACCTT
CTGTGAGCTACCGGTCTTCGTCTTTCGCCAGATGTCCCACTCCACCGGAT
GCATTTTCTTCTTGTGGGAGTGCATGTTGGCGTTGGAGTTGAAGGTGCGG
GGACAGAAGGGACACTTGTAGAGTGGCTCGCCAGTGTGCTGCGCCATATG
CTCCTTAAGGCTGATGTCCTTCTTGAAGGTTTTGCCACACTGCTCGCAGG
TGTAGATCACATTCGAGTGGGAGTAGCGCTTATGACCAATCAGCGCGCGG
GAGTTCTTGCAGCTCTTGCCACACTCTGAGCAGATAAACAGCTTGCCCTC
GTCGTTGTGGCGCCTCAAATGCTGCTTAAGATTGTCCTCGTCCTTCAGCC
AGCTCTCGCAGTCAGGACGCGGGCACTTGATCCGTGGTCCGCTCTCCTCG
AAGTGCAGGCGAACGTGCTTTTCGAAGACAGCCTTGTCCTTGATCTTCTT
GCCGCACACATGGCAGATATTGGCCGCCTTGCGGTGCTGCATGCTGATAT
GGACCTGCATGTGGTACTCCGTGGCAAAAGCATTGTGTTTGGGGCACTGC
GGGCAGATGAACTTGCGCTCATTTACGGGCACATGGGAGCCCTTGTGCAG
TTCGAGCAGGTTGCGTCGCGAGAAGCGTTTGCCGCAGTCCTCGCACTGGA
AGTCGCACTCCTCGTCTGGAACATGGTGGACCAGCCAGTGGGCACGCAAT
ACGCTGGGATTGGCGAACACCTTTTCGCAGTCCTTGCATTTGATGTACTC
GGGGATCTCATGCCTCCTCGCATGCTCCTGGATGAAGCAGCGCTTGTTGA
GCTTGCGTCCGCAGCACTTGATGTAGGGGCCGCT
BS01208.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33133-PA | 1713 | grau-RA | 802..1713 | 928..17 | 4435 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grau-RA | 1894 | CG33133-RA | 873..1789 | 934..17 | 4490 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21010168..21010544 | 253..629 | 1885 | 100 | Plus |
2R | 25286936 | 2R | 21009869..21010107 | 17..255 | 1195 | 100 | Plus |
2R | 25286936 | 2R | 21010607..21010816 | 630..839 | 1020 | 99 | Plus |
2R | 25286936 | 2R | 21010879..21010967 | 840..928 | 400 | 96.6 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:04:09 has no hits.
BS01208.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:32 Download gff for
BS01208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grau-PA | 797..1713 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:18 Download gff for
BS01208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33133-PA | 797..1713 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:18 Download gff for
BS01208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grau-RA | 873..1791 | 13..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:48 Download gff for
BS01208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grau-RA | 873..1791 | 13..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:48 Download gff for
BS01208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21009867..21010105 | 13..253 | 99 | <- | Plus |
2R | 21010169..21010544 | 254..629 | 100 | <- | Plus |
2R | 21010607..21010816 | 630..839 | 99 | <- | Plus |
2R | 21010879..21010972 | 840..934 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:18 Download gff for
BS01208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16897372..16897610 | 13..253 | 99 | <- | Plus |
arm_2R | 16897674..16898049 | 254..629 | 100 | <- | Plus |
arm_2R | 16898112..16898321 | 630..839 | 99 | <- | Plus |
arm_2R | 16898384..16898477 | 840..934 | 95 | | Plus |
BS01208.5prime Sequence
823 bp (714 high quality bases) assembled on 2005-11-29
> BS01208.5prime
GAAGTTATCAGTCGACATGGATATCTGCCGCCTCTGTTTACGCGGAGTGA
GCGGCGCCCAGATGTGTCTACAGATCTTCGATGTGGACTCGGGCGAGAGC
AAGGTGGCGGAGGTGCTGCGCCAACATTTCTGGTTCGAGGTACTGCCCAA
CGACGAGATATCCAAGGTTATTTGCAACGTCTGCTGGACGCAGGTGTCCG
AGTTCCATCAGTTCTACGTGTCCATACAGGAGGCCCAGGTGATATACGCC
ACCACCTCCAAGTTCAAGCAGGATCCGGAGATGGTGAACACCTCCTGGCC
GGAGGAGGTGCTCATGCCGGCCGACGTCCTTGCCGTCGACAACGATGTCG
GTGCGCAGATAAATGTGAATCCCCTGGACGAGTTAGACCTTAGCCAACCC
ATGTCCCCGGAAGACAGCAAGGTGGGCATCAAAACAGAGCGACAGTCACC
CGACATGGAACTCCTCTTTGAGGATGCCAACAATGAACAGGATGAGGACT
ACGAGGACGACGAGGATGATGACACCGACGACCTGATCGTGACCCGGAGT
GGACGCAAACGTAAACGGGACGTGGCCAAGCCGGCTAAAACGAAAAGAGG
AACGGTGTCGGTGGGCAGAAAGGGGAAGGAGAAGATGGTGGTCAAGCGGG
GACCGCCCAAGAGGATATTCAAGATGGAACGCCTGCCGCCGTTTTGCAAA
GAGGACGAGGAACTGATNCAGCGCTACATAGTCATGGGCTGCGAGCTGTG
CATATTCTTGGCCGAGGACTTCGACGGCATCCGCGAGCACTTCAAGGACA
AGCATCCGGACGAGCGGCCCTAC
BS01208.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33133-PA | 1713 | grau-RA | 1..807 | 17..823 | 3991 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grau-RA | 1894 | CG33133-RA | 73..883 | 13..823 | 4014 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21010962..21011647 | 823..138 | 3404 | 99.7 | Minus |
2R | 25286936 | 2R | 21011720..21011849 | 142..13 | 635 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:22:55 has no hits.
BS01208.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:33 Download gff for
BS01208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grau-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:19 Download gff for
BS01208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33133-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:36:06 Download gff for
BS01208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grau-RA | 66..883 | 7..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:11:25 Download gff for
BS01208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grau-RA | 66..883 | 7..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:11:25 Download gff for
BS01208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21010962..21011645 | 140..823 | 99 | <- | Minus |
2R | 21011723..21011852 | 7..139 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:36:06 Download gff for
BS01208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16898467..16899150 | 140..823 | 99 | <- | Minus |
arm_2R | 16899228..16899357 | 7..139 | 96 | | Minus |
BS01208.complete Sequence
1745 bp assembled on 2009-02-12
> BS01208.complete
GAAGTTATCAGTCGACATGGATATCTGCCGCCTCTGTTTACGCGGAGTGA
GCGGCGCCCAGATGTGTCTACAGATCTTCGATGTGGACTCGGGCGAGAGC
AAGGTGGCGGAGGTGCTGCGCCAACATTTCTGGTTCGAGGTACTGCCCAA
CGACGAGATATCCAAGGTTATTTGCAACGTCTGCTGGACGCAGGTGTCCG
AGTTCCATCAGTTCTACGTGTCCATACAGGAGGCCCAGGTGATATACGCC
ACCACCTCCAAGTTCAAGCAGGATCCGGAGATGGTGAACACCTCCTGGCC
GGAGGAGGTGCTCATGCCGGCCGACGTCCTTGCCGTCGACAACGATGTCG
GTGCGCAGATAAATGTGAATCCCCTGGACGAGTTAGACCTTAGCCAACCC
ATGTCCCCGGAAGACAGCAAGGTGGGCATCAAAACAGAGCGACAGTCACC
CGACATGGAACTCCTCTTTGAGGATGCCAACAATGAACAGGATGAGGACT
ACGAGGACGACGAGGATGATGACACCGACGACCTGATCGTGACCCGGAGT
GGACGCAAACGTAAACGGGACGTGGCCAAGCCGGCTAAAACGAAAAGAGG
AACGGTGTCGGTGGGCAGAAAGGGGAAGGAGAAGATGGTGGTCAAGCGGG
GACCGCCCAAGAGGATATTCAAGATGGAACGCCTGCCGCCGTTTTGCAAA
GAGGACGAGGAACTGATCAAGCGCTACATAGTCATGGGCTGCGAGCTGTG
CATATTCTTGGCCGAGGACTTCGACGGCATCCGCGAGCACTTCAAGGACA
AGCATCCGGACGAGCGGCCCTACATCAAGTGCTGCGGACGCAAGCTCAAC
AAGCGCTGCCTCATCCAGGAGCATGCGAGGAGGCATGAGAATCCCGAGTA
CATCAAATGCAAGGACTGCGGAAAGGTGTTCGCCAATTCCAGCGTATTGC
GTGCCCACTGGCTGGTCCACCATGTTCCAGACGAGGAGTGCGACTTCCAG
TGCGAGGACTGCGGCAAACGCTTCTCGCGACGCAACCTGCTCGAACTGCA
CAAGGGCTCCCATGTGCCCGTAAATGAGCGCAAGTTCATCTGCCCGCAGT
GCCCCAAACACAATGCTTTTGCCACGGAGTACCACATGCAGGTCCATATC
AGCATGCAGCACCGCAAGGCGGCCAATATCTGCCATGTGTGCGGCAAGAA
GATCAAGGACAAGGCTGTCTTCGAAAAGCACGTTCGCCTGCACTTCGAGG
AGAGCGGACCACGGATCAAGTGCCCGCGTCCTGACTGCGAGAGCTGGCTG
AAGGACGAGGACAATCTTAAGCAGCATTTGAGGCGCCACAACGACGAGGG
CAAGCTGTTTATCTGCTCAGAGTGTGGCAAGAGCTGCAAGAACTCCCGCG
CGCTGATTGGTCATAAGCGCTACTCCCACTCGAATGTGATCTACACCTGC
GAGCAGTGTGGCAAAACCTTCAAGAAGGACATCAGCCTTAAGGAGCATAT
GGCGCAGCACACTGGCGAGCCACTCTACAAGTGTCCCTTCTGTCCCCGCA
CCTTCAACTCCAACGCCAACATGCACTCCCACAAGAAGAAAATGCATCCG
GTGGAGTGGGACATCTGGCGAAAGACGAAGACCGGTAGCTCACAGAAGGT
CCTGCCCAGCGCCCAAGTGGCGCAAATGTTCCGGGACGATGCCGATGTCG
CAGCTATTGCCAATGACTATTCGGGTTAGAAGCTTTCTAGACCAT
BS01208.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grau-RA | 1713 | CG33133-PA | 1..1713 | 17..1729 | 8565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grau-RA | 1894 | CG33133-RA | 73..1789 | 13..1729 | 8570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21010879..21011647 | 906..138 | 3845 | 100 | Minus |
2R | 25286936 | 2R | 21010168..21010544 | 1493..1117 | 1885 | 100 | Minus |
2R | 25286936 | 2R | 21009869..21010107 | 1729..1491 | 1195 | 100 | Minus |
2R | 25286936 | 2R | 21010607..21010816 | 1116..907 | 1050 | 100 | Minus |
2R | 25286936 | 2R | 21011720..21011849 | 142..13 | 635 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:46:01 has no hits.
BS01208.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:16 Download gff for
BS01208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grau-RA | 75..1787 | 17..1729 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:19 Download gff for
BS01208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grau-RA | 77..1789 | 17..1729 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:03 Download gff for
BS01208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grau-RA | 77..1789 | 17..1729 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:03 Download gff for
BS01208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21009869..21010105 | 1493..1729 | 100 | <- | Minus |
2R | 21010169..21010544 | 1117..1492 | 100 | <- | Minus |
2R | 21010607..21010816 | 907..1116 | 100 | <- | Minus |
2R | 21010879..21011645 | 140..906 | 100 | <- | Minus |
2R | 21011723..21011845 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:19 Download gff for
BS01208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16898112..16898321 | 907..1116 | 100 | <- | Minus |
arm_2R | 16897374..16897610 | 1493..1729 | 100 | <- | Minus |
arm_2R | 16897674..16898049 | 1117..1492 | 100 | <- | Minus |
arm_2R | 16898384..16899150 | 140..906 | 100 | <- | Minus |
arm_2R | 16899228..16899350 | 17..139 | 100 | | Minus |
BS01208.pep Sequence
Translation from 16 to 1728
> BS01208.pep
MDICRLCLRGVSGAQMCLQIFDVDSGESKVAEVLRQHFWFEVLPNDEISK
VICNVCWTQVSEFHQFYVSIQEAQVIYATTSKFKQDPEMVNTSWPEEVLM
PADVLAVDNDVGAQINVNPLDELDLSQPMSPEDSKVGIKTERQSPDMELL
FEDANNEQDEDYEDDEDDDTDDLIVTRSGRKRKRDVAKPAKTKRGTVSVG
RKGKEKMVVKRGPPKRIFKMERLPPFCKEDEELIKRYIVMGCELCIFLAE
DFDGIREHFKDKHPDERPYIKCCGRKLNKRCLIQEHARRHENPEYIKCKD
CGKVFANSSVLRAHWLVHHVPDEECDFQCEDCGKRFSRRNLLELHKGSHV
PVNERKFICPQCPKHNAFATEYHMQVHISMQHRKAANICHVCGKKIKDKA
VFEKHVRLHFEESGPRIKCPRPDCESWLKDEDNLKQHLRRHNDEGKLFIC
SECGKSCKNSRALIGHKRYSHSNVIYTCEQCGKTFKKDISLKEHMAQHTG
EPLYKCPFCPRTFNSNANMHSHKKKMHPVEWDIWRKTKTGSSQKVLPSAQ
VAQMFRDDADVAAIANDYSG*
BS01208.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grau-PA | 570 | CG33133-PA | 1..570 | 1..570 | 3121 | 100 | Plus |
CG15073-PA | 580 | CG15073-PA | 2..527 | 3..539 | 791 | 33.1 | Plus |
CG15073-PB | 551 | CG15073-PB | 2..498 | 3..539 | 706 | 31.3 | Plus |
CG8388-PA | 572 | CG8388-PA | 3..535 | 4..544 | 683 | 29.5 | Plus |
CG4707-PA | 673 | CG4707-PA | 221..638 | 128..536 | 600 | 34.6 | Plus |