Clone BS01208 Report

Search the DGRC for BS01208

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:12
Well:8
Vector:pDNR-Dual
Associated Gene/Transcriptgrau-RA
Protein status:BS01208.pep: full length peptide match
Sequenced Size:1745

Clone Sequence Records

BS01208.3prime Sequence

934 bp (804 high quality bases) assembled on 2005-11-29

> BS01208.3prime
ATGGTCTAGAAAGCTTCTAACCCGAATAGTCATTGGCAATAGCTGCGACA
TCGGCATCGTCCCGGAACATTTGCGCCACTTGGGCGCTGGGCAGGACCTT
CTGTGAGCTACCGGTCTTCGTCTTTCGCCAGATGTCCCACTCCACCGGAT
GCATTTTCTTCTTGTGGGAGTGCATGTTGGCGTTGGAGTTGAAGGTGCGG
GGACAGAAGGGACACTTGTAGAGTGGCTCGCCAGTGTGCTGCGCCATATG
CTCCTTAAGGCTGATGTCCTTCTTGAAGGTTTTGCCACACTGCTCGCAGG
TGTAGATCACATTCGAGTGGGAGTAGCGCTTATGACCAATCAGCGCGCGG
GAGTTCTTGCAGCTCTTGCCACACTCTGAGCAGATAAACAGCTTGCCCTC
GTCGTTGTGGCGCCTCAAATGCTGCTTAAGATTGTCCTCGTCCTTCAGCC
AGCTCTCGCAGTCAGGACGCGGGCACTTGATCCGTGGTCCGCTCTCCTCG
AAGTGCAGGCGAACGTGCTTTTCGAAGACAGCCTTGTCCTTGATCTTCTT
GCCGCACACATGGCAGATATTGGCCGCCTTGCGGTGCTGCATGCTGATAT
GGACCTGCATGTGGTACTCCGTGGCAAAAGCATTGTGTTTGGGGCACTGC
GGGCAGATGAACTTGCGCTCATTTACGGGCACATGGGAGCCCTTGTGCAG
TTCGAGCAGGTTGCGTCGCGAGAAGCGTTTGCCGCAGTCCTCGCACTGGA
AGTCGCACTCCTCGTCTGGAACATGGTGGACCAGCCAGTGGGCACGCAAT
ACGCTGGGATTGGCGAACACCTTTTCGCAGTCCTTGCATTTGATGTACTC
GGGGATCTCATGCCTCCTCGCATGCTCCTGGATGAAGCAGCGCTTGTTGA
GCTTGCGTCCGCAGCACTTGATGTAGGGGCCGCT

BS01208.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG33133-PA 1713 grau-RA 802..1713 928..17 4435 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
grau-RA 1894 CG33133-RA 873..1789 934..17 4490 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21010168..21010544 253..629 1885 100 Plus
2R 25286936 2R 21009869..21010107 17..255 1195 100 Plus
2R 25286936 2R 21010607..21010816 630..839 1020 99 Plus
2R 25286936 2R 21010879..21010967 840..928 400 96.6 Plus
Blast to na_te.dros performed on 2015-02-09 03:04:09 has no hits.

BS01208.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:32 Download gff for BS01208.3prime
Subject Subject Range Query Range Percent Splice Strand
grau-PA 797..1713 17..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:18 Download gff for BS01208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33133-PA 797..1713 17..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:18 Download gff for BS01208.3prime
Subject Subject Range Query Range Percent Splice Strand
grau-RA 873..1791 13..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:48 Download gff for BS01208.3prime
Subject Subject Range Query Range Percent Splice Strand
grau-RA 873..1791 13..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:48 Download gff for BS01208.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21009867..21010105 13..253 99 <- Plus
2R 21010169..21010544 254..629 100 <- Plus
2R 21010607..21010816 630..839 99 <- Plus
2R 21010879..21010972 840..934 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:18 Download gff for BS01208.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16897372..16897610 13..253 99 <- Plus
arm_2R 16897674..16898049 254..629 100 <- Plus
arm_2R 16898112..16898321 630..839 99 <- Plus
arm_2R 16898384..16898477 840..934 95   Plus

BS01208.5prime Sequence

823 bp (714 high quality bases) assembled on 2005-11-29

> BS01208.5prime
GAAGTTATCAGTCGACATGGATATCTGCCGCCTCTGTTTACGCGGAGTGA
GCGGCGCCCAGATGTGTCTACAGATCTTCGATGTGGACTCGGGCGAGAGC
AAGGTGGCGGAGGTGCTGCGCCAACATTTCTGGTTCGAGGTACTGCCCAA
CGACGAGATATCCAAGGTTATTTGCAACGTCTGCTGGACGCAGGTGTCCG
AGTTCCATCAGTTCTACGTGTCCATACAGGAGGCCCAGGTGATATACGCC
ACCACCTCCAAGTTCAAGCAGGATCCGGAGATGGTGAACACCTCCTGGCC
GGAGGAGGTGCTCATGCCGGCCGACGTCCTTGCCGTCGACAACGATGTCG
GTGCGCAGATAAATGTGAATCCCCTGGACGAGTTAGACCTTAGCCAACCC
ATGTCCCCGGAAGACAGCAAGGTGGGCATCAAAACAGAGCGACAGTCACC
CGACATGGAACTCCTCTTTGAGGATGCCAACAATGAACAGGATGAGGACT
ACGAGGACGACGAGGATGATGACACCGACGACCTGATCGTGACCCGGAGT
GGACGCAAACGTAAACGGGACGTGGCCAAGCCGGCTAAAACGAAAAGAGG
AACGGTGTCGGTGGGCAGAAAGGGGAAGGAGAAGATGGTGGTCAAGCGGG
GACCGCCCAAGAGGATATTCAAGATGGAACGCCTGCCGCCGTTTTGCAAA
GAGGACGAGGAACTGATNCAGCGCTACATAGTCATGGGCTGCGAGCTGTG
CATATTCTTGGCCGAGGACTTCGACGGCATCCGCGAGCACTTCAAGGACA
AGCATCCGGACGAGCGGCCCTAC

BS01208.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG33133-PA 1713 grau-RA 1..807 17..823 3991 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
grau-RA 1894 CG33133-RA 73..883 13..823 4014 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21010962..21011647 823..138 3404 99.7 Minus
2R 25286936 2R 21011720..21011849 142..13 635 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 06:22:55 has no hits.

BS01208.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:33 Download gff for BS01208.5prime
Subject Subject Range Query Range Percent Splice Strand
grau-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:19 Download gff for BS01208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33133-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:36:06 Download gff for BS01208.5prime
Subject Subject Range Query Range Percent Splice Strand
grau-RA 66..883 7..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:11:25 Download gff for BS01208.5prime
Subject Subject Range Query Range Percent Splice Strand
grau-RA 66..883 7..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:11:25 Download gff for BS01208.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21010962..21011645 140..823 99 <- Minus
2R 21011723..21011852 7..139 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:36:06 Download gff for BS01208.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16898467..16899150 140..823 99 <- Minus
arm_2R 16899228..16899357 7..139 96   Minus

BS01208.complete Sequence

1745 bp assembled on 2009-02-12

> BS01208.complete
GAAGTTATCAGTCGACATGGATATCTGCCGCCTCTGTTTACGCGGAGTGA
GCGGCGCCCAGATGTGTCTACAGATCTTCGATGTGGACTCGGGCGAGAGC
AAGGTGGCGGAGGTGCTGCGCCAACATTTCTGGTTCGAGGTACTGCCCAA
CGACGAGATATCCAAGGTTATTTGCAACGTCTGCTGGACGCAGGTGTCCG
AGTTCCATCAGTTCTACGTGTCCATACAGGAGGCCCAGGTGATATACGCC
ACCACCTCCAAGTTCAAGCAGGATCCGGAGATGGTGAACACCTCCTGGCC
GGAGGAGGTGCTCATGCCGGCCGACGTCCTTGCCGTCGACAACGATGTCG
GTGCGCAGATAAATGTGAATCCCCTGGACGAGTTAGACCTTAGCCAACCC
ATGTCCCCGGAAGACAGCAAGGTGGGCATCAAAACAGAGCGACAGTCACC
CGACATGGAACTCCTCTTTGAGGATGCCAACAATGAACAGGATGAGGACT
ACGAGGACGACGAGGATGATGACACCGACGACCTGATCGTGACCCGGAGT
GGACGCAAACGTAAACGGGACGTGGCCAAGCCGGCTAAAACGAAAAGAGG
AACGGTGTCGGTGGGCAGAAAGGGGAAGGAGAAGATGGTGGTCAAGCGGG
GACCGCCCAAGAGGATATTCAAGATGGAACGCCTGCCGCCGTTTTGCAAA
GAGGACGAGGAACTGATCAAGCGCTACATAGTCATGGGCTGCGAGCTGTG
CATATTCTTGGCCGAGGACTTCGACGGCATCCGCGAGCACTTCAAGGACA
AGCATCCGGACGAGCGGCCCTACATCAAGTGCTGCGGACGCAAGCTCAAC
AAGCGCTGCCTCATCCAGGAGCATGCGAGGAGGCATGAGAATCCCGAGTA
CATCAAATGCAAGGACTGCGGAAAGGTGTTCGCCAATTCCAGCGTATTGC
GTGCCCACTGGCTGGTCCACCATGTTCCAGACGAGGAGTGCGACTTCCAG
TGCGAGGACTGCGGCAAACGCTTCTCGCGACGCAACCTGCTCGAACTGCA
CAAGGGCTCCCATGTGCCCGTAAATGAGCGCAAGTTCATCTGCCCGCAGT
GCCCCAAACACAATGCTTTTGCCACGGAGTACCACATGCAGGTCCATATC
AGCATGCAGCACCGCAAGGCGGCCAATATCTGCCATGTGTGCGGCAAGAA
GATCAAGGACAAGGCTGTCTTCGAAAAGCACGTTCGCCTGCACTTCGAGG
AGAGCGGACCACGGATCAAGTGCCCGCGTCCTGACTGCGAGAGCTGGCTG
AAGGACGAGGACAATCTTAAGCAGCATTTGAGGCGCCACAACGACGAGGG
CAAGCTGTTTATCTGCTCAGAGTGTGGCAAGAGCTGCAAGAACTCCCGCG
CGCTGATTGGTCATAAGCGCTACTCCCACTCGAATGTGATCTACACCTGC
GAGCAGTGTGGCAAAACCTTCAAGAAGGACATCAGCCTTAAGGAGCATAT
GGCGCAGCACACTGGCGAGCCACTCTACAAGTGTCCCTTCTGTCCCCGCA
CCTTCAACTCCAACGCCAACATGCACTCCCACAAGAAGAAAATGCATCCG
GTGGAGTGGGACATCTGGCGAAAGACGAAGACCGGTAGCTCACAGAAGGT
CCTGCCCAGCGCCCAAGTGGCGCAAATGTTCCGGGACGATGCCGATGTCG
CAGCTATTGCCAATGACTATTCGGGTTAGAAGCTTTCTAGACCAT

BS01208.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
grau-RA 1713 CG33133-PA 1..1713 17..1729 8565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
grau-RA 1894 CG33133-RA 73..1789 13..1729 8570 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21010879..21011647 906..138 3845 100 Minus
2R 25286936 2R 21010168..21010544 1493..1117 1885 100 Minus
2R 25286936 2R 21009869..21010107 1729..1491 1195 100 Minus
2R 25286936 2R 21010607..21010816 1116..907 1050 100 Minus
2R 25286936 2R 21011720..21011849 142..13 635 99.2 Minus
Blast to na_te.dros performed on 2014-11-27 13:46:01 has no hits.

BS01208.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:16 Download gff for BS01208.complete
Subject Subject Range Query Range Percent Splice Strand
grau-RA 75..1787 17..1729 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:19 Download gff for BS01208.complete
Subject Subject Range Query Range Percent Splice Strand
grau-RA 77..1789 17..1729 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:03 Download gff for BS01208.complete
Subject Subject Range Query Range Percent Splice Strand
grau-RA 77..1789 17..1729 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:03 Download gff for BS01208.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21009869..21010105 1493..1729 100 <- Minus
2R 21010169..21010544 1117..1492 100 <- Minus
2R 21010607..21010816 907..1116 100 <- Minus
2R 21010879..21011645 140..906 100 <- Minus
2R 21011723..21011845 17..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:19 Download gff for BS01208.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16898112..16898321 907..1116 100 <- Minus
arm_2R 16897374..16897610 1493..1729 100 <- Minus
arm_2R 16897674..16898049 1117..1492 100 <- Minus
arm_2R 16898384..16899150 140..906 100 <- Minus
arm_2R 16899228..16899350 17..139 100   Minus

BS01208.pep Sequence

Translation from 16 to 1728

> BS01208.pep
MDICRLCLRGVSGAQMCLQIFDVDSGESKVAEVLRQHFWFEVLPNDEISK
VICNVCWTQVSEFHQFYVSIQEAQVIYATTSKFKQDPEMVNTSWPEEVLM
PADVLAVDNDVGAQINVNPLDELDLSQPMSPEDSKVGIKTERQSPDMELL
FEDANNEQDEDYEDDEDDDTDDLIVTRSGRKRKRDVAKPAKTKRGTVSVG
RKGKEKMVVKRGPPKRIFKMERLPPFCKEDEELIKRYIVMGCELCIFLAE
DFDGIREHFKDKHPDERPYIKCCGRKLNKRCLIQEHARRHENPEYIKCKD
CGKVFANSSVLRAHWLVHHVPDEECDFQCEDCGKRFSRRNLLELHKGSHV
PVNERKFICPQCPKHNAFATEYHMQVHISMQHRKAANICHVCGKKIKDKA
VFEKHVRLHFEESGPRIKCPRPDCESWLKDEDNLKQHLRRHNDEGKLFIC
SECGKSCKNSRALIGHKRYSHSNVIYTCEQCGKTFKKDISLKEHMAQHTG
EPLYKCPFCPRTFNSNANMHSHKKKMHPVEWDIWRKTKTGSSQKVLPSAQ
VAQMFRDDADVAAIANDYSG*

BS01208.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
grau-PA 570 CG33133-PA 1..570 1..570 3121 100 Plus
CG15073-PA 580 CG15073-PA 2..527 3..539 791 33.1 Plus
CG15073-PB 551 CG15073-PB 2..498 3..539 706 31.3 Plus
CG8388-PA 572 CG8388-PA 3..535 4..544 683 29.5 Plus
CG4707-PA 673 CG4707-PA 221..638 128..536 600 34.6 Plus