Clone Sequence Records
BS01209.3prime Sequence
889 bp (839 high quality bases) assembled on 2005-11-29
> BS01209.3prime
ATGGTCTAGAAAGCTTTTAATCGTGGGCACTCTGTGCATCCTCTCTGCCG
GTCATCTTCTTAAGCTGGTTGTTTCCATGCACCGTCAGGCTGTGGTTTGT
GAACTCGAGTATGCTCCTAAACGACTGCTTGCAGATGTGGCAGGGCACAG
TCTTTGTGGGAGTGCGGTAGACGCCGGCATGCGCCACATTCTTGGGAATT
TTTTTCACGCTCGGTGGAGCCATGGACTGGGTTCCTTGTGAGGGAGCTAA
TTTGGGAATAGTACTAATGCGTTGCTGTGGCTTCTGGGGCATCGTCATGG
GATGGTTAATGCCACTGGTGCCACCGATCTTTGGCAGCTGGGCTTTCTTC
TCGTGGTTCAGCTCGGTGAACTCCAGCTTGCGCTTCTCGGACGGCGGTAT
CTTGTCGCAGTTCTGCATTAAATGGATGTGCAAGGCACGTTCCAGTGCGA
AATTCTTATCGCAAAACTTGCAGCGATTCTTCGAGACTCCCGCTGCAACC
GGATTGCTGTTCAGACGCTTAAGGGTATTGGCTCCGTTGTCAACCGGATC
GTGCATTCGCATATGCACGTCAAGAAGTGACTTCACCCGAAAGGTTGTGC
TGCAATTCTTGCAGCTAAAAACTTTCTCCGGAATGCTTTTTGTCGATGTC
TTAGCCGGCTTTGAGGCGATCTTCTCAGGCGAACGCACGCTGGTCACAGC
GAGCGACTTTCTTATGCTGCTCTTTGTTAGCTTGGAGACGGGCAAGCAGC
TGCGACGGCTTAGTGACACACCGCCACCGACACTCCGCTTGCGAGCTGGG
CTGTTGAGCGTTGTCTTGACCACCACCGACATGCGCTGCTTGAAGGAGTA
CGTTCGCGTCTCTGCGGTGGTGGTGGGCAGATAGGAGCG
BS01209.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-PB | 1716 | CG8478-RB | 844..1716 | 889..17 | 4365 | 100 | Minus |
| CG8478-PA | 1659 | CG8478-RA | 787..1659 | 889..17 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-RD | 2177 | CG8478-RD | 1008..1881 | 889..16 | 4370 | 100 | Minus |
| CG8478-RC | 2165 | CG8478-RC | 996..1869 | 889..16 | 4370 | 100 | Minus |
| CG8478-RE | 2162 | CG8478-RE | 993..1866 | 889..16 | 4370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9764905..9765547 | 889..247 | 3215 | 100 | Minus |
| 3R | 32079331 | 3R | 9765607..9765839 | 248..16 | 1165 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:03:44 has no hits.
BS01209.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:34 Download gff for
BS01209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-PB | 844..1716 | 17..889 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:21 Download gff for
BS01209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-PA | 787..1659 | 17..889 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:14 Download gff for
BS01209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RE | 993..1868 | 11..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:46 Download gff for
BS01209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RE | 993..1868 | 11..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:46 Download gff for
BS01209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9764905..9765547 | 247..889 | 100 | -> | Minus |
| 3R | 9765609..9765841 | 11..246 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:14 Download gff for
BS01209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5590627..5591269 | 247..889 | 100 | -> | Minus |
| arm_3R | 5591331..5591563 | 11..246 | 98 | | Minus |
BS01209.5prime Sequence
873 bp (677 high quality bases) assembled on 2005-11-29
> BS01209.5prime
GAAGTTATCAGTCGACATGGACGATTCGCGCAGAACTATGGCCGGCAAGA
TCGATTCCCGTAGCTCATCGATAATGACAAACGATGAGAGCGTCTCCATG
TATTTATCCTTTGACGCGGAGGACACCCTGTCCAATGCCAAGTGGCAGTC
GGCCCTGGTCACCCAGAACAGCCAGTTCCTGGAGGTGCACAACAGCAAGG
TGGAGGTAAACACCGATGATAAGGACCTAAGGCGCACTATCCTAAAGGAT
CTGCATCAGTTGACCATTGGGGAACCGGACCAGAATTCTCCTCTGCGCCC
ATTTGACAAAAGTATTCTTAACCGGCACAACGCCTTGTGCTCCACTCCCT
CCAAGGGCAATATTTCGACCGAAACGCAGACACCACAGATCATGGAGAGC
ATAGATCTGACCCAAATTGACGACAAGGAAAACACACAACCGGAGGGGTG
TGGCGGCGATAACTCGACCTTGTCCAGTTCAGTGGACGTGACCGCCAATA
CGGTTAAGGCCAATACCCTAAAAACAGGGGATGCTACCATGGACAATGTA
TCCTTGCAGGAGGCTGCCAAGACCCCAGCTCCCAGCCAAGTCTATCCCTT
GAGTGCGAACGTAGTTTTAGAGAATATAACTGAAGTATCCAACGAAGGAG
TATCCATGCTGGTCTCGCCAGCCGGAGCCGAAAAGGAGGTCGCCCATGTC
AACGAGGTAGTGAACGAAGTCTCTGAGCTAATTGCCAAAGCTCTAAAGAT
CTCCGCTGATTCTGTGAAGCCAGCGACCTCCAAATTAAAAGTGGAGGCGG
GCAAGAAGAGGCAGTCCATGAGCTCCACTTATTCGGGTGCCGCCCTACCG
CGCCCTCGGCGCTCCTATCTGCC
BS01209.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-PB | 1716 | CG8478-RB | 1..857 | 17..873 | 4285 | 100 | Plus |
| CG8478-PA | 1659 | CG8478-RA | 1..800 | 74..873 | 4000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-RE | 2162 | CG8478-RE | 149..1006 | 16..873 | 4290 | 100 | Plus |
| CG8478-RB | 2266 | CG8478-RB | 253..1110 | 16..873 | 4290 | 100 | Plus |
| CG8478-RC | 2165 | CG8478-RC | 149..1009 | 16..873 | 4250 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9764039..9764626 | 48..635 | 2940 | 100 | Plus |
| 3R | 32079331 | 3R | 9764679..9764918 | 634..873 | 1200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:52:06 has no hits.
BS01209.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:35 Download gff for
BS01209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-PB | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:22 Download gff for
BS01209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-PB | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:09 Download gff for
BS01209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 253..1110 | 16..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:27:49 Download gff for
BS01209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 253..1110 | 16..873 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:27:49 Download gff for
BS01209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9763902..9763935 | 16..49 | 100 | -> | Plus |
| 3R | 9764041..9764626 | 50..635 | 100 | -> | Plus |
| 3R | 9764681..9764918 | 636..873 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:09 Download gff for
BS01209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5589624..5589657 | 16..49 | 100 | -> | Plus |
| arm_3R | 5589763..5590348 | 50..635 | 100 | -> | Plus |
| arm_3R | 5590403..5590640 | 636..873 | 100 | | Plus |
BS01209.complete Sequence
1748 bp (1748 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634561
> BS01209.complete
GAAGTTATCAGTCGACATGGACGATTCGCGCAGAACTATGGCCGGCAAGA
TCGATTCCCGTAGCTCATCGATAATGACAAACGATGAGAGCGTCTCCATG
TATTTATCCTTTGACGCGGAGGACACCCTGTCCAATGCCAAGTGGCAGTC
GGCCCTGGTCACCCAGAACAGCCAGTTCCTGGAGGTGCACAACAGCAAGG
TGGAGGTAAACACCGATGATAAGGACCTAAGGCGCACTATCCTAAAGGAT
CTGCATCAGTTGACCATTGGGGAACCGGACCAGAATTCTCCTCTGCGCCC
ATTTGACAAAAGTATTCTTAACCGGCACAACGCCTTGTGCTCCACTCCCT
CCAAGGGCAATATTTCGACCGAAACGCAGACACCACAGATCATGGAGAGC
ATAGATCTGACCCAAATTGACGACAAGGAAAACACACAACCGGAGGGGTG
TGGCGGCGATAACTCGACCTTGTCCAGTTCAGTGGACGTGACCGCCAATA
CGGTTAAGGCCAATACCCTAAAAACAGGGGATGCTACCATGGACAATGTA
TCCTTGCAGGAGGCTGCCAAGACCCCAGCTCCCAGCCAAGTCTATCCCTT
GAGTGCGAACGTAGTTTTAGAGAATATAACTGAAGTATCCAACGAAGGAG
TATCCATGCTGGTCTCGCCAGCCGGAGCCGAAAAGGAGGTCGCCCATGTC
AACGAGGTAGTGAACGAAGTCTCTGAGCTAATTGCCAAAGCTCTAAAGAT
CTCCGCTGATTCTGTGAAGCCAGCGACCTCCAAATTAAAAGTGGAGGCGG
GCAAGAAGAGGCAGTCCATGAGCTCCACTTATTCGGGTGCCGCCCTACCG
CGCCCTCGGCGCTCCTATCTGCCCACCACCACCGCAGAGACGCGAACGTA
CTCCTTCAAGCAGCGCATGTCGGTGGTGGTCAAGACAACGCTCAACAGCC
CAGCTCGCAAGCGGAGTGTCGGTGGCGGTGTGTCACTAAGCCGTCGCAGC
TGCTTGCCCGTCTCCAAGCTAACAAAGAGCAGCATAAGAAAGTCGCTCGC
TGTGACCAGCGTGCGTTCGCCTGAGAAGATCGCCTCAAAGCCGGCTAAGA
CATCGACAAAAAGCATTCCGGAGAAAGTTTTTAGCTGCAAGAATTGCAGC
ACAACCTTTCGGGTGAAGTCACTTCTTGACGTGCATATGCGAATGCACGA
TCCGGTTGACAACGGAGCCAATACCCTTAAGCGTCTGAACAGCAATCCGG
TTGCAGCGGGAGTCTCGAAGAATCGCTGCAAGTTTTGCGATAAGAATTTC
GCACTGGAACGTGCCTTGCACATCCATTTAATGCAGAACTGCGACAAGAT
ACCGCCGTCCGAGAAGCGCAAGCTGGAGTTCACCGAGCTGAACCACGAGA
AGAAAGCCCAGCTGCCAAAGATCGGTGGCACCAGTGGCATTAACCATCCC
ATGACGATGCCCCAGAAGCCACAGCAACGCATTAGTACTATTCCCAAATT
AGCTCCCTCACAAGGAACCCAGTCCATGGCTCCACCGAGCGTGAAAAAAA
TTCCCAAGAATGTGGCGCATGCCGGCGTCTACCGCACTCCCACAAAGACT
GTGCCCTGCCACATCTGCAAGCAGTCGTTTAGGAGCATACTCGAGTTCAC
AAACCACAGCCTGACGGTGCATGGAAACAACCAGCTTAAGAAGATGACCG
GCAGAGAGGATGCACAGAGTGCCCACGATTAAAAGCTTTCTAGACCAT
BS01209.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-RE | 1716 | CG8478-PE | 1..1716 | 17..1732 | 8580 | 100 | Plus |
| CG8478-RB | 1716 | CG8478-PB | 1..1716 | 17..1732 | 8580 | 100 | Plus |
| CG8478-RC | 1719 | CG8478-PC | 1..1719 | 17..1732 | 8515 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-RE | 2162 | CG8478-RE | 149..1866 | 16..1733 | 8590 | 100 | Plus |
| CG8478-RB | 2266 | CG8478-RB | 253..1970 | 16..1733 | 8590 | 100 | Plus |
| CG8478-RC | 2165 | CG8478-RC | 149..1869 | 16..1733 | 8525 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9764679..9765547 | 634..1502 | 4345 | 100 | Plus |
| 3R | 32079331 | 3R | 9764039..9764626 | 48..635 | 2940 | 100 | Plus |
| 3R | 32079331 | 3R | 9765607..9765839 | 1501..1733 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:31:12 has no hits.
BS01209.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:40 Download gff for
BS01209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 1..1716 | 17..1732 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:53 Download gff for
BS01209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 253..1972 | 16..1738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:24 Download gff for
BS01209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 254..1967 | 17..1730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:41 Download gff for
BS01209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 253..1972 | 16..1738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:30 Download gff for
BS01209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 254..1967 | 17..1730 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:30 Download gff for
BS01209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9763903..9763935 | 17..49 | 100 | -> | Plus |
| 3R | 9764041..9764626 | 50..635 | 100 | -> | Plus |
| 3R | 9764681..9765547 | 636..1502 | 100 | -> | Plus |
| 3R | 9765609..9765836 | 1503..1730 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:24 Download gff for
BS01209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5589625..5589657 | 17..49 | 100 | -> | Plus |
| arm_3R | 5589763..5590348 | 50..635 | 100 | -> | Plus |
| arm_3R | 5590403..5591269 | 636..1502 | 100 | -> | Plus |
| arm_3R | 5591331..5591558 | 1503..1730 | 100 | | Plus |
BS01209.pep Sequence
Translation from 16 to 1731
> BS01209.pep
MDDSRRTMAGKIDSRSSSIMTNDESVSMYLSFDAEDTLSNAKWQSALVTQ
NSQFLEVHNSKVEVNTDDKDLRRTILKDLHQLTIGEPDQNSPLRPFDKSI
LNRHNALCSTPSKGNISTETQTPQIMESIDLTQIDDKENTQPEGCGGDNS
TLSSSVDVTANTVKANTLKTGDATMDNVSLQEAAKTPAPSQVYPLSANVV
LENITEVSNEGVSMLVSPAGAEKEVAHVNEVVNEVSELIAKALKISADSV
KPATSKLKVEAGKKRQSMSSTYSGAALPRPRRSYLPTTTAETRTYSFKQR
MSVVVKTTLNSPARKRSVGGGVSLSRRSCLPVSKLTKSSIRKSLAVTSVR
SPEKIASKPAKTSTKSIPEKVFSCKNCSTTFRVKSLLDVHMRMHDPVDNG
ANTLKRLNSNPVAAGVSKNRCKFCDKNFALERALHIHLMQNCDKIPPSEK
RKLEFTELNHEKKAQLPKIGGTSGINHPMTMPQKPQQRISTIPKLAPSQG
TQSMAPPSVKKIPKNVAHAGVYRTPTKTVPCHICKQSFRSILEFTNHSLT
VHGNNQLKKMTGREDAQSAHD*
BS01209.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-PE | 571 | CG8478-PE | 1..571 | 1..571 | 2907 | 100 | Plus |
| CG8478-PB | 571 | CG8478-PB | 1..571 | 1..571 | 2907 | 100 | Plus |
| CG8478-PC | 572 | CG8478-PC | 1..572 | 1..571 | 2895 | 99.8 | Plus |
| CG8478-PD | 576 | CG8478-PD | 1..576 | 1..571 | 2891 | 99.1 | Plus |
| CG6470-PB | 337 | CG6470-PB | 10..293 | 204..467 | 228 | 25.9 | Plus |
