Clone Sequence Records
BS01212.3prime Sequence
897 bp (754 high quality bases) assembled on 2005-11-29
> BS01212.3prime
ATGGTCTAGAAAGCTTTCAGAAGATCACCGTTAGCGGTCGTCGAAAGTCC
GCGGCGGTGGCGCCACCACTCCCACCGCCCGCCGAGCCCCCGGCTGCACC
TGCGGCCCCACCACCCACTGCACCACCCGCTGCCGCTGCCAATTGACCGC
CATATTGCTGGGCATATTGGGCGTAGTCCAGACCCACATCACTGGGCGAA
TGCAGATGCGGCTTGGACTCAACCGCCTCCAATTGGGGTGTGGCATCGCG
GTCATCCAGCCCACTGCTGCTGTTGTTGTTGTGCGAGCTGGCACTGCCGC
CCCCGCCGCTGCCCCCACCACCGCTGAGCAGCAACTGTTGCTGCTGCTGC
TGCTGTTGCTGCTGCTGCTGCTGTTGCTGCTGGTGGTGGGCTGCTGCATG
TTGCTGGGCACCATAAATCTTGGATATGTCGAAGGCATAGTTGGCCGCCC
GATCCTGGTACATCTTGGAGTCGAAATACGCCTTGGTCAGCACACTGGGG
TCCAAGTAGGCGCTGTAGGCACTCGCCTGCGAGGAGTTGCTCAGATACGA
GCTGCGCTCCAGGGCGAACTTGTCCATCTGACCGGAGAGGGTGGCCTGCG
TCGTGGTTGGCGTCGATGTCTGGCCGAGATGGCTGCCCAGGTGATAGGCA
GCCGCTGTGGGACCGGGCGCAAAGTAACCGGGCGTTATGCCCGCTCTTAA
CGCCTCCACGGGCACAGATGGATATGGCATTGGATAAGGATAGCCATCGC
GTCTCAGAGCTTTTGGCTTTCGTCGCGGTCTGTATTTATAGTCCGGATGT
TCCTTCATGTGCATGGCCCTCAATCGTTGGGCCTCATCGATGAACGGACG
CTTCTCCTCCTCGGTGAGCAACTTCCACTCGGCACCCAGCCTTTTGG
BS01212.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32139-PA | 1716 | Sox21b-RA | 836..1716 | 897..17 | 4380 | 99.8 | Minus |
| CG17888-PC | 1713 | Pdp1-RC | 112..164 | 382..330 | 165 | 92.4 | Minus |
| CG7391-PF | 2886 | Clk-RF | 2257..2308 | 379..331 | 140 | 90.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox21b-RC | 3201 | CG32139-RC | 1702..2582 | 897..17 | 4390 | 99.9 | Minus |
| Sox21b-RB | 3201 | CG32139-RB | 1702..2582 | 897..17 | 4390 | 99.9 | Minus |
| Sox21b-RA | 2648 | CG32139-RA | 1149..2029 | 897..17 | 4390 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:26:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14113024..14113605 | 17..598 | 2910 | 100 | Plus |
| 3L | 28110227 | 3L | 14118444..14118574 | 690..820 | 655 | 100 | Plus |
| 3L | 28110227 | 3L | 14116265..14116361 | 595..691 | 485 | 100 | Plus |
| 3L | 28110227 | 3L | 14118630..14118698 | 818..886 | 330 | 98.6 | Plus |
| 3L | 28110227 | 3L | 14176689..14176813 | 765..889 | 325 | 84 | Plus |
| 2L | 23513712 | 2L | 8827130..8827265 | 889..754 | 245 | 78.7 | Minus |
Blast to na_te.dros performed 2015-02-10 23:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2422 | 382..265 | 198 | 64.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6819 | 363..265 | 146 | 62 | Minus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 665..718 | 261..314 | 108 | 66.7 | Plus |
BS01212.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:41 Download gff for
BS01212.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32139-PA | 836..1716 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:29 Download gff for
BS01212.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32139-PA | 836..1716 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:41:58 Download gff for
BS01212.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 1149..2029 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:43:35 Download gff for
BS01212.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 1149..2029 | 17..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:43:35 Download gff for
BS01212.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14118631..14118706 | 819..894 | 93 | | Plus |
| 3L | 14113024..14113602 | 17..595 | 100 | <- | Plus |
| 3L | 14116266..14116360 | 596..690 | 100 | <- | Plus |
| 3L | 14118445..14118572 | 691..818 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:41:58 Download gff for
BS01212.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14106124..14106702 | 17..595 | 100 | <- | Plus |
| arm_3L | 14109366..14109460 | 596..690 | 100 | <- | Plus |
| arm_3L | 14111545..14111672 | 691..818 | 100 | <- | Plus |
| arm_3L | 14111731..14111806 | 819..894 | 93 | | Plus |
BS01212.5prime Sequence
861 bp (791 high quality bases) assembled on 2005-11-29
> BS01212.5prime
GAAGTTATCAGTCGACATGATGGAACGTCTGTCCACGCACCTGTCGCTCA
CCGGCCTATCGCTAGCTCATCCCCTGCAAACTCACCTGGGTTCCGGCGGC
GGAACGCACCACCTTGGTCAACTGGCGGCGGCGGTGCATCAGCAGCAACA
GCAGCAGCAACAATCTGACCAGGGTCTCGGCCACTCGCACCACCTGCACG
GCCAGCAGTTGTCGCTGAACCACCAGCACCACCATCCCCACCAGTCGCCA
CAGCATCAGCAGCAGCATCAGCACCACCCGTGCAGTAGCAACAGCAGCAA
CGGATCCCCCAACGGCTCCACCGGCCTGGGCCTGCATCCCCACTCGGCGC
TCCACCTGGCACACCATCACTCGCAGCTGCATCAGCACCACCCGGCGGGT
CAGCAGCAGCAGCACAGCCAACCGCCGGTTTCCTCCTCCTCGACCTCGCA
CCACAGCCAGTCGCAGGCGCTGAGCCATCAGACGCACAGCAACGGCAGCT
CCCAGCTGGGCGGTGGTTCGGCCAGTGGTGCGGGATCAGTGGCCGGCGGT
GCAGCCAACAGCCACCACAGTGCTCCAGCCTCCAGCAGCGTGATGGCGGC
CGCAGCAGCCGCCCACCTGCATCACAACTCGCAGGCATCGCCCATCAGCA
ATCTGCACCAAAACATGGGCAGTCTCATGAACAGCGGAAGCAGCGCGAGC
GATGTCTTCTTTAGTCTGATGATCCAGAACACAACAAAGCGCCAAAACGA
GGAGCACATAAAACGTCCAATGAACGCTTTCATGGTCTGGTCGAGACTTC
AGCGGCGCAAGATAGCTCAGGATAATCCTAAGATGCACAATTCAGAGATA
TCCAAAAGGCT
BS01212.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32139-PA | 1716 | Sox21b-RA | 1..845 | 17..861 | 4225 | 100 | Plus |
| CG7345-PA | 1167 | Sox21a-RA | 370..396 | 767..793 | 135 | 100 | Plus |
| CG33141-PA | 4440 | sns-RA | 45..71 | 136..162 | 135 | 100 | Plus |
| CG33141-PB | 4629 | sns-RB | 45..71 | 136..162 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox21b-RC | 3201 | CG32139-RC | 863..1711 | 13..861 | 4230 | 99.9 | Plus |
| Sox21b-RB | 3201 | CG32139-RB | 863..1711 | 13..861 | 4230 | 99.9 | Plus |
| Sox21b-RA | 2648 | CG32139-RA | 310..1158 | 13..861 | 4230 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14125390..14126076 | 699..13 | 3420 | 99.9 | Minus |
| 3L | 28110227 | 3L | 14125088..14125251 | 861..698 | 820 | 100 | Minus |
| 3L | 28110227 | 3L | 14106616..14106717 | 856..755 | 240 | 82.4 | Minus |
| 3L | 28110227 | 3L | 14176818..14176918 | 855..755 | 235 | 82.2 | Minus |
Blast to na_te.dros performed 2015-02-13 08:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6911 | 137..325 | 290 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2539 | 130..381 | 263 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6923 | 136..325 | 255 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6923 | 136..301 | 252 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2541 | 137..344 | 237 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6959 | 219..428 | 234 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2642 | 136..427 | 218 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2502 | 137..325 | 214 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6964 | 136..316 | 212 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6952 | 137..297 | 198 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2922 | 107..422 | 193 | 53.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2536 | 137..279 | 185 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2539 | 137..296 | 183 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6817..6944 | 136..260 | 182 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2778..2961 | 119..301 | 180 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2622 | 129..313 | 155 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..7007 | 134..301 | 147 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2831..2989 | 136..296 | 144 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..3031 | 141..387 | 137 | 53 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6826 | 353..420 | 135 | 68.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1150 | 137..163 | 126 | 96.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6893..7059 | 137..305 | 120 | 55.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1137 | 125..162 | 120 | 82.1 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7941..7977 | 127..162 | 119 | 83.8 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9385..9421 | 127..162 | 119 | 83.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2427 | 349..422 | 118 | 62.2 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..705 | 413..346 | 117 | 66.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2370 | 362..418 | 116 | 69 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1128 | 91..162 | 114 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1585 | 137..198 | 112 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6802 | 361..427 | 108 | 65.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1116 | 136..162 | 108 | 88.9 | Plus |
BS01212.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:42 Download gff for
BS01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32139-PA | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:30 Download gff for
BS01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32139-PA | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:35:36 Download gff for
BS01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 305..1158 | 7..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:06:48 Download gff for
BS01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 305..1158 | 7..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:06:48 Download gff for
BS01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14125088..14125249 | 700..861 | 100 | <- | Minus |
| 3L | 14125390..14126081 | 7..699 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:35:36 Download gff for
BS01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14118188..14118349 | 700..861 | 100 | <- | Minus |
| arm_3L | 14118490..14119181 | 7..699 | 99 | | Minus |
BS01212.complete Sequence
1748 bp assembled on 2008-08-15
GenBank Submission: FJ634562
> BS01212.complete
GAAGTTATCAGTCGACATGATGGAACGTCTGTCCACGCACCTGTCGCTCA
CCGGCCTATCGCTAGCTCATCCCCTGCAAACTCACCTGGGTTCCGGCGGC
GGAACGCACCACCTTGGTCAACTGGCGGCGGCGGTGCATCAGCAGCAACA
GCAGCAGCAACAATCTGACCAGGGTCTCGGCCACTCGCACCACCTGCACG
GCCAGCAGTTGTCGCTGAACCACCAGCACCACCATCCCCACCAGTCGCCA
CAGCATCAGCAGCAGCATCAGCACCACCCGTGCAGTAGCAACAGCAGCAA
CGGATCCCCCAACGGCTCCACCGGCCTGGGCCTGCATCCCCACTCGGCGC
TCCACCTGGCACACCATCACTCGCAGCTGCATCAGCACCACCCGGCGGGT
CAGCAGCAGCAGCACAGCCAACCGCCGGTTTCCTCCTCCTCGACCTCGCA
CCACAGCCAGTCGCAGGCGCTGAGCCATCAGACGCACAGCAACGGCAGCT
CCCAGCTGGGCGGTGGTTCGGCCAGTGGTGCGGGATCAGTGGCCGGCGGT
GCAGCCAACAGCCACCACAGTGCTCCAGCCTCCAGCAGCGTGATGGCGGC
CGCAGCAGCCGCCCACCTGCATCACAACTCGCAGGCATCGCCCATCAGCA
ATCTGCACCAAAACATGGGCAGTCTCATGAACAGCGGAAGCAGCGCGAGC
GATGTCTTCTTTAGTCTGATGATCCAGAACACAACAAAGCGCCAAAACGA
GGAGCACATAAAACGTCCAATGAACGCTTTCATGGTCTGGTCGAGACTTC
AGCGGCGCAAGATAGCTCAGGATAATCCTAAGATGCACAATTCAGAGATA
TCCAAAAGGCTGGGTGCCGAGTGGAAGTTGCTCACCGAGGAGGAGAAGCG
TCCGTTCATCGATGAGGCCAAACGATTGAGGGCCATGCACATGAAGGAAC
ATCCGGACTATAAATACAGACCGCGACGAAAGCCAAAAGCTCTGAGACGC
GATGGCTATCCTTATCCAATGCCATATCCATCTGTGCCCGTGGAGGCGTT
AAGAGCGGGCATAACGCCCGGTTACTTTGCGCCCGGTCCCACAGCGGCTG
CCTATCACCTGGGCAGCCATCTCGGCCAGACATCGACGCCAACCACGACG
CAGGCCACCCTCTCCGGTCAGATGGACAAGTTCGCCCTGGAGCGCAGCTC
GTATCTGAGCAACTCCTCGCAGGCGAGTGCCTACAGCGCCTACTTGGACC
CCAGTGTGCTGACCAAGGCGTATTTCGACTCCAAGATGTACCAGGATCGG
GCGGCCAACTATGCCTTCGACATATCCAAGATTTATGGTGCCCAGCAACA
TGCAGCAGCCCACCACCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGC
AGCAGCAGCAACAGTTGCTGCTCAGCGGTGGTGGGGGCAGCGGCGGGGGC
GGCAGTGCCAGCTCGCACAACAACAACAGCAGCAGTGGGCTGGATGACCG
CGATGCCACACCCCAATTGGAGGCGGTTGAGTCCAAGCCGCATCTGCATT
CGCCCAGTGATGTGGGTCTGGACTACGCCCAATATGCCCAGCAATATGGC
GGTCAATTGGCAGCGGCAGCGGGTGGTGCAGTGGGTGGTGGGGCCGCAGG
TGCAGCCGGGGGCTCGGCGGGCGGTGGGAGTGGTGGCGCCACCGCCGCGG
ACTTTCGACGACCGCTAACGGTGATCTTCTGAAAGCTTTCTAGACCAT
BS01212.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox21b-RC | 1764 | CG32139-PC | 1..1716 | 17..1732 | 8580 | 100 | Plus |
| Sox21b-RB | 1716 | CG32139-PB | 1..1716 | 17..1732 | 8580 | 100 | Plus |
| Sox21b-RA | 1716 | CG32139-PA | 1..1716 | 17..1732 | 8580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox21b-RC | 3201 | CG32139-RC | 863..2582 | 13..1732 | 8585 | 99.9 | Plus |
| Sox21b-RB | 3201 | CG32139-RB | 863..2582 | 13..1732 | 8585 | 99.9 | Plus |
| Sox21b-RA | 2648 | CG32139-RA | 310..2029 | 13..1732 | 8585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14125390..14126076 | 699..13 | 3420 | 99.9 | Minus |
| 3L | 28110227 | 3L | 14113024..14113605 | 1732..1151 | 2910 | 100 | Minus |
| 3L | 28110227 | 3L | 14125084..14125251 | 865..698 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 14118444..14118574 | 1059..929 | 655 | 100 | Minus |
| 3L | 28110227 | 3L | 14176689..14176918 | 984..755 | 550 | 82.6 | Minus |
| 3L | 28110227 | 3L | 14116265..14116361 | 1154..1058 | 485 | 100 | Minus |
| 3L | 28110227 | 3L | 14106544..14106717 | 928..755 | 420 | 82.8 | Minus |
| 3L | 28110227 | 3L | 14118630..14118698 | 931..863 | 345 | 100 | Minus |
| 2L | 23513712 | 2L | 8827040..8827265 | 770..995 | 335 | 76.5 | Plus |
Blast to na_te.dros performed 2014-11-26 22:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6911 | 137..325 | 290 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2539 | 130..381 | 263 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6923 | 136..325 | 255 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6923 | 136..301 | 252 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2541 | 137..344 | 237 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6959 | 219..428 | 234 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2642 | 136..427 | 218 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2502 | 137..325 | 214 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6964 | 136..316 | 212 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6952 | 137..297 | 198 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2922 | 107..422 | 193 | 53.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2536 | 137..279 | 185 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2539 | 137..296 | 183 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6817..6944 | 136..260 | 182 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2778..2961 | 119..301 | 180 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2622 | 129..313 | 155 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..7007 | 134..301 | 147 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2831..2989 | 136..296 | 144 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..3031 | 141..387 | 137 | 53 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6826 | 353..420 | 135 | 68.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1150 | 137..163 | 126 | 96.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6893..7059 | 137..305 | 120 | 55.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1137 | 125..162 | 120 | 82.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2427 | 349..422 | 118 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2370 | 362..418 | 116 | 69 | Plus |
BS01212.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:40:54 Download gff for
BS01212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 305..2029 | 7..1732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:27 Download gff for
BS01212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 314..2028 | 17..1731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:16 Download gff for
BS01212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 314..2028 | 17..1731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:46 Download gff for
BS01212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 314..2028 | 17..1731 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:46 Download gff for
BS01212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14118445..14118572 | 931..1058 | 100 | <- | Minus |
| 3L | 14118631..14118697 | 864..930 | 100 | <- | Minus |
| 3L | 14125086..14125249 | 700..863 | 100 | <- | Minus |
| 3L | 14113025..14113602 | 1154..1731 | 100 | <- | Minus |
| 3L | 14116266..14116360 | 1059..1153 | 100 | <- | Minus |
| 3L | 14125390..14126072 | 17..699 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:27 Download gff for
BS01212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14111545..14111672 | 931..1058 | 100 | <- | Minus |
| arm_3L | 14111731..14111797 | 864..930 | 100 | <- | Minus |
| arm_3L | 14118186..14118349 | 700..863 | 100 | <- | Minus |
| arm_3L | 14106125..14106702 | 1154..1731 | 100 | <- | Minus |
| arm_3L | 14109366..14109460 | 1059..1153 | 100 | <- | Minus |
| arm_3L | 14118490..14119172 | 17..699 | 100 | | Minus |
BS01212.pep Sequence
Translation from 16 to 1731
> BS01212.pep
MMERLSTHLSLTGLSLAHPLQTHLGSGGGTHHLGQLAAAVHQQQQQQQQS
DQGLGHSHHLHGQQLSLNHQHHHPHQSPQHQQQHQHHPCSSNSSNGSPNG
STGLGLHPHSALHLAHHHSQLHQHHPAGQQQQHSQPPVSSSSTSHHSQSQ
ALSHQTHSNGSSQLGGGSASGAGSVAGGAANSHHSAPASSSVMAAAAAAH
LHHNSQASPISNLHQNMGSLMNSGSSASDVFFSLMIQNTTKRQNEEHIKR
PMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTEEEKRPFIDE
AKRLRAMHMKEHPDYKYRPRRKPKALRRDGYPYPMPYPSVPVEALRAGIT
PGYFAPGPTAAAYHLGSHLGQTSTPTTTQATLSGQMDKFALERSSYLSNS
SQASAYSAYLDPSVLTKAYFDSKMYQDRAANYAFDISKIYGAQQHAAAHH
QQQQQQQQQQQQQQQQLLLSGGGGSGGGGSASSHNNNSSSGLDDRDATPQ
LEAVESKPHLHSPSDVGLDYAQYAQQYGGQLAAAAGGAVGGGAAGAAGGS
AGGGSGGATAADFRRPLTVIF*
BS01212.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox21b-PC | 587 | CG32139-PC | 1..571 | 1..571 | 3014 | 100 | Plus |
| Sox21b-PB | 571 | CG32139-PB | 1..571 | 1..571 | 3014 | 100 | Plus |
| Sox21b-PA | 571 | CG32139-PA | 1..571 | 1..571 | 3014 | 100 | Plus |
| SoxN-PA | 572 | CG18024-PA | 14..487 | 73..542 | 520 | 32.5 | Plus |
| SoxN-PB | 761 | CG18024-PB | 14..487 | 73..542 | 520 | 32.5 | Plus |
