Clone BS01213 Report

Search the DGRC for BS01213

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:12
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptSoxN-RA
Protein status:BS01213.pep: full length peptide match
Sequenced Size:1751

Clone Sequence Records

BS01213.3prime Sequence

904 bp (727 high quality bases) assembled on 2005-11-29

> BS01213.3prime
ATGGTCTAGAAAGCTTTCACATGTGTGCCAGCGGCGCCATCGCCCTCAGC
GATTGCTGATGCTGCAGGTGGTGTTGCTGCTGCTGCTGCTGCATGGTATG
GTGTTGCTGCGGGATCTGTTGGTGCTGCTGCGAAAGGTGTTGCTGCGGGA
GGTGCTGCTGCTGCTGTTGCATCGACTGGTGCTGCTGCTGCAGATCGGGC
GAGTCAGTCTGATAGTGCAGCAGGTGGCGCTGCTCATCCGGCAGATGGTA
CATATTCATCAGGTGATTCAGCTCGCCGCCGCCGGCGGCTGCTGCCGCTG
CTGCTGCTGCTGCTGCCGCCGCTGCAGAGCTGTATTCCCGCTTCATGATG
TGATTGTTGTTGATGTTGTTGTTGTTGTTGAGCGCTATGGCACTGGGACT
GGGCGACACCGGTTCGGACTTGATGCTCGAGTCGCTGGGGCTGTGGCTCT
GGCAGGAAACCTGACCGCCACCGCCTCCACCTCCGCCGTACGGAGTCGGA
CTGCCGGGCTGCTGCTGCAAGCTACTGCCGCCATACGGCGACGGTGATCC
GGGCTGCTGGAGACTGCTGCCGTACGGCGATGTCTGTCCGCCGGACACCG
TCTGGTACATCGCATACCCGTTGTTGTACATGTGTCCCATGTCGTACCGC
TGCGCCGCGTAGTGCTGGCCCATGTAGGAGGTCTGATAGGCTGCCGCTCC
GGCCGGATCTGCGTGCATCATGTAGCCATTGGGCATGTATCCATTGGGCG
CGTTCATCTGGTACATATCCTGGCGCGCCTGTTGCGCTGCCGCTGCTGCC
CGCGCCGCTGCCGCTGCTGCACTGCCTCCACTACCGTTTAGCGACTGGTT
CTGGCCCAGCTGACCTTGCACCCGCGTGGGCGTCACCGGCTCACCCGGTG
CTCC

BS01213.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG18024-PA 1719 SoxN-RA 832..1719 904..17 4340 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
SoxN-RB 4026 CG18024-RB 1681..2568 904..17 4380 99.5 Minus
SoxN-RA 4026 CG18024-RA 1681..2568 904..17 4380 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8827325..8828212 904..17 4380 99.5 Minus
Blast to na_te.dros performed on 2015-02-01 09:10:47 has no hits.

BS01213.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:43 Download gff for BS01213.3prime
Subject Subject Range Query Range Percent Splice Strand
SoxN-PA 832..1719 17..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:31 Download gff for BS01213.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18024-PA 832..1719 17..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:15:24 Download gff for BS01213.3prime
Subject Subject Range Query Range Percent Splice Strand
SoxN-RA 1681..2568 17..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:54:47 Download gff for BS01213.3prime
Subject Subject Range Query Range Percent Splice Strand
SoxN-RA 1681..2568 17..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:54:47 Download gff for BS01213.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8827325..8828212 17..904 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:15:24 Download gff for BS01213.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8827325..8828212 17..904 99   Minus

BS01213.5prime Sequence

848 bp (777 high quality bases) assembled on 2005-11-29

> BS01213.5prime
GAAGTTATCAGTCGACATGCTGACCATGGAATCGGATATGAAAGGCAGCC
TGCTGCATGCCACCATGCCGCCGCATCACACAAGTGCCGCGTTGCACGGA
CATGCGGCATCGCCGTACTCCGCCCTAGCTCCCCTTATGAACCTGGGCCA
GTCGCACCTGACCCACTCGCAGCTGAGCCATCACAACCACCATCATCACC
ACATGAGCGCCCATATCGCGGCCAGCCAGAGTCCCAATCCGCTGAGCTCG
CTGCAGTCCTCGATGGCGAACACCCTCAATGGCAGCCAGGTGGGGCAGCA
GCAGCAGCAACAGCAGCAGCAGCAGAGCTCCCCGCTGCACAGCTCCAGCG
AATTGAGTCCCACCCAGAGCAGCATCGGAAGCCATCACATGACATCGCCG
GTCAGCCACCAGCAGCACACGCAACAGCAGCAGCACGGGCAGCAGCAGCA
TCTGGGCGCGGGATCTGCATTGAGCAGCCTAACTGGAGGATCCAGCAACA
ACAACAACAACAGCGCCACGGCCAACAAGAACCAACAGCACGCGGATCGT
GTGAAGCGGCCTATGAATGCGTTCATGGTTTGGTCACGGGGCCAGCGGAG
GAAGATGGCCTCGGACAACCCCAAGATGCACAACTCGGAGATCTCGAAGC
GACTGGGCGCCCAGTGGAAGGACCTCTCGGAATCGGAGAAGCGACCGTTC
ATCGACGAGGCCAAGCGCCTGANGGCGGTGCACATGAAGGAGCATCCGGA
CTACAAGTACCGGCCGCGCCGCAAGACTAAAACGCTGAACAAGAACAAGG
AGAAGTACCCAATGGGCGGCCTGATGCCCGGACAGACGGTGGGGCGGC

BS01213.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG18024-PA 1719 SoxN-RA 1..827 17..843 4066 99.6 Plus
CG5893-PA 1149 D-RA 556..648 683..775 246 90.3 Plus
CG5893-PA 1149 D-RA 490..543 617..670 145 90.7 Plus
CG15552-PA 1590 Sox100B-RA 416..454 738..776 145 94.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
SoxN-RB 4026 CG18024-RB 850..1676 17..843 4094 99.6 Plus
SoxN-RA 4026 CG18024-RA 850..1676 17..843 4094 99.6 Plus
D-RD 2619 CG5893-RD 1633..1854 554..775 544 82.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8826494..8827320 17..843 4094 99.6 Plus
3L 28110227 3L 14176691..14176912 775..554 544 82.9 Minus
3L 28110227 3L 14106554..14106711 711..554 250 77.2 Minus
Blast to na_te.dros performed on 2015-02-11 23:40:53 has no hits.

BS01213.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:44 Download gff for BS01213.5prime
Subject Subject Range Query Range Percent Splice Strand
SoxN-PA 1..831 17..848 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:33 Download gff for BS01213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18024-PA 1..831 17..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:09:42 Download gff for BS01213.5prime
Subject Subject Range Query Range Percent Splice Strand
SoxN-RA 850..1680 17..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:51 Download gff for BS01213.5prime
Subject Subject Range Query Range Percent Splice Strand
SoxN-RA 850..1680 17..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:51 Download gff for BS01213.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8826494..8827324 17..848 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:09:42 Download gff for BS01213.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8826494..8827324 17..848 99   Plus

BS01213.complete Sequence

1751 bp assembled on 2008-08-15

GenBank Submission: FJ634563

> BS01213.complete
GAAGTTATCAGTCGACATGCTGACCATGGAATCGGATATGAAAGGCAGCC
TGCTGCATGCCACCATGCCGCCGCATCACACAAGTGCCGCGTTGCACGGA
CATGCGGCATCGCCGTACTCCGCCCTAGCTCCCCTTATGAACCTGGGCCA
GTCGCACCTGACCCACTCGCAGCTGAGCCATCACAACCACCATCATCACC
ACATGAGCGCCCATATCGCGGCCAGCCAGAGTCCCAATCCGCTGAGCTCG
CTGCAGTCCTCGATGGCGAACACCCTCAATGGCAGCCAGGTGGGGCAGCA
GCAGCAGCAACAGCAGCAGCAGCAGAGCTCCCCGCTGCACAGCTCCAGCG
AATTGAGTCCCACCCAGAGCAGCATCGGAAGCCATCACATGACATCGCCG
GTCAGCCACCAGCAGCACACGCAACAGCAGCAGCACGGGCAGCAGCAGCA
TCTGGGCGCGGGATCTGCATTGAGCAGCCTAACTGGAGGATCCAGCAACA
ACAACAACAACAGCGCCACGGCCAACAAGAACCAACAGCACGCGGATCGT
GTGAAGCGGCCTATGAATGCGTTCATGGTTTGGTCACGGGGCCAGCGGAG
GAAGATGGCCTCGGACAACCCCAAGATGCACAACTCGGAGATCTCGAAGC
GACTGGGCGCCCAGTGGAAGGACCTCTCGGAATCGGAGAAGCGACCGTTC
ATCGACGAGGCCAAGCGCCTGAGGGCGGTGCACATGAAGGAGCATCCGGA
CTACAAGTACCGGCCGCGCCGCAAGACTAAAACGCTGACCAAGACCAAGG
AGAAGTACCCAATGGGCGGCCTGATGCCCGGACAGACGGTGGGCGGCGGA
GCACCGGGTGAGCCGGTGACGCCCACGCGGGTGCAAGGTCAGCCTGGCCA
GAACCAGTCGCTAAACGGTAGTGGAGGCAGTGCAGCAGCGGCAGCGGCGG
CGGCAGCAGCGGCAGCGCAACAGGCGCGCCAGGATATGTACCAGATGAAC
GCGCCCAATGGATACATGCCCAATGGCTACATGATGCACGCAGATCCGGC
CGGAGCGGCAGCCTATCAGACCTCCTACATGGGCCAGCACTACGCGGCGC
AGCGGTACGACATGGGACACATGTACAACAACGGGTATGCGATGTACCAG
ACGGTGTCCGGCGGACAGACATCGCCGTACGGCAGCAGTCTCCAGCAGCC
CGGATCACCGTCGCCGTATGGCGGCAGTAGCTTGCAGCAGCAGCCCGGCA
GTCCGACTCCGTACGGCGGAGGTGGAGGCGGTGGCGGTCAGGTTTCCTGC
CAGAGCCACAGCCCCAGCGACTCGAGCATCAAGTCCGAACCGGTGTCGCC
CAGTCCCAGTGCCATAGCGCTCAACAACAACAACAACATCAACAACAATC
ACATCATGAAGCGGGAATACAGCTCTGCAGCGGCGGCAGCAGCAGCAGCA
GCAGCGGCAGCAGCCGCCGGCGGCGGCGAGCTGAATCACCTGATGAATAT
GTACCATCTGCCGGATGAGCAGCGCCACCTGCTGCACTATCAGACTGACT
CGCCCGATCTGCAGCAGCAGCACCAGTCGATGCAACAGCAGCAGCAGCAC
CTCCCGCAGCAACACCTTTCGCAGCAGCACCAACAGATCCCGCAGCAACA
CCATACCATGCAGCAGCAGCAGCAGCAACACCACCTGCAGCATCAGCAAT
CGCTGAGGGCGATGGCGCCGCTGGCACACATGTGAAAGCTTTCTAGACCA
T

BS01213.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
SoxN-RB 2286 CG18024-PB 1..1719 17..1735 8595 100 Plus
SoxN-RA 1719 CG18024-PA 1..1719 17..1735 8595 100 Plus
D-RD 1149 CG5893-PD 427..648 554..775 555 83.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
SoxN-RB 4026 CG18024-RB 850..2568 17..1735 8595 100 Plus
SoxN-RA 4026 CG18024-RA 850..2568 17..1735 8595 100 Plus
D-RD 2619 CG5893-RD 1633..1854 554..775 555 83.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8826494..8828212 17..1735 8595 100 Plus
3L 28110227 3L 14176691..14176912 775..554 555 83.3 Minus
3L 28110227 3L 14106554..14106711 711..554 250 77.2 Minus
Blast to na_te.dros performed on 2014-11-26 15:40:49 has no hits.

BS01213.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:42 Download gff for BS01213.complete
Subject Subject Range Query Range Percent Splice Strand
SoxN-RA 870..2588 17..1735 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:44 Download gff for BS01213.complete
Subject Subject Range Query Range Percent Splice Strand
SoxN-RA 850..2567 17..1734 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:04 Download gff for BS01213.complete
Subject Subject Range Query Range Percent Splice Strand
SoxN-RA 870..2587 17..1734 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:19 Download gff for BS01213.complete
Subject Subject Range Query Range Percent Splice Strand
SoxN-RA 850..2567 17..1734 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:19 Download gff for BS01213.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8826494..8828211 17..1734 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:44 Download gff for BS01213.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8826494..8828211 17..1734 100   Plus

BS01213.pep Sequence

Translation from 16 to 1734

> BS01213.pep
MLTMESDMKGSLLHATMPPHHTSAALHGHAASPYSALAPLMNLGQSHLTH
SQLSHHNHHHHHMSAHIAASQSPNPLSSLQSSMANTLNGSQVGQQQQQQQ
QQQSSPLHSSSELSPTQSSIGSHHMTSPVSHQQHTQQQQHGQQQHLGAGS
ALSSLTGGSSNNNNNSATANKNQQHADRVKRPMNAFMVWSRGQRRKMASD
NPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRP
RRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEPVTPTRVQGQPGQNQSLN
GSGGSAAAAAAAAAAAAQQARQDMYQMNAPNGYMPNGYMMHADPAGAAAY
QTSYMGQHYAAQRYDMGHMYNNGYAMYQTVSGGQTSPYGSSLQQPGSPSP
YGGSSLQQQPGSPTPYGGGGGGGGQVSCQSHSPSDSSIKSEPVSPSPSAI
ALNNNNNINNNHIMKREYSSAAAAAAAAAAAAAAGGGELNHLMNMYHLPD
EQRHLLHYQTDSPDLQQQHQSMQQQQQHLPQQHLSQQHQQIPQQHHTMQQ
QQQQHHLQHQQSLRAMAPLAHM*

BS01213.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
SoxN-PB 761 CG18024-PB 1..572 1..572 3037 100 Plus
SoxN-PA 572 CG18024-PA 1..572 1..572 3037 100 Plus
Sox21b-PB 571 CG32139-PB 70..554 45..487 519 32.3 Plus
Sox21b-PA 571 CG32139-PA 70..554 45..487 519 32.3 Plus
Sox21b-PC 587 CG32139-PC 70..554 45..487 519 32.3 Plus
SoxN-PB 761 CG18024-PB 441..755 282..569 190 27.6 Plus