Clone Sequence Records
BS01213.3prime Sequence
904 bp (727 high quality bases) assembled on 2005-11-29
> BS01213.3prime
ATGGTCTAGAAAGCTTTCACATGTGTGCCAGCGGCGCCATCGCCCTCAGC
GATTGCTGATGCTGCAGGTGGTGTTGCTGCTGCTGCTGCTGCATGGTATG
GTGTTGCTGCGGGATCTGTTGGTGCTGCTGCGAAAGGTGTTGCTGCGGGA
GGTGCTGCTGCTGCTGTTGCATCGACTGGTGCTGCTGCTGCAGATCGGGC
GAGTCAGTCTGATAGTGCAGCAGGTGGCGCTGCTCATCCGGCAGATGGTA
CATATTCATCAGGTGATTCAGCTCGCCGCCGCCGGCGGCTGCTGCCGCTG
CTGCTGCTGCTGCTGCCGCCGCTGCAGAGCTGTATTCCCGCTTCATGATG
TGATTGTTGTTGATGTTGTTGTTGTTGTTGAGCGCTATGGCACTGGGACT
GGGCGACACCGGTTCGGACTTGATGCTCGAGTCGCTGGGGCTGTGGCTCT
GGCAGGAAACCTGACCGCCACCGCCTCCACCTCCGCCGTACGGAGTCGGA
CTGCCGGGCTGCTGCTGCAAGCTACTGCCGCCATACGGCGACGGTGATCC
GGGCTGCTGGAGACTGCTGCCGTACGGCGATGTCTGTCCGCCGGACACCG
TCTGGTACATCGCATACCCGTTGTTGTACATGTGTCCCATGTCGTACCGC
TGCGCCGCGTAGTGCTGGCCCATGTAGGAGGTCTGATAGGCTGCCGCTCC
GGCCGGATCTGCGTGCATCATGTAGCCATTGGGCATGTATCCATTGGGCG
CGTTCATCTGGTACATATCCTGGCGCGCCTGTTGCGCTGCCGCTGCTGCC
CGCGCCGCTGCCGCTGCTGCACTGCCTCCACTACCGTTTAGCGACTGGTT
CTGGCCCAGCTGACCTTGCACCCGCGTGGGCGTCACCGGCTCACCCGGTG
CTCC
BS01213.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18024-PA | 1719 | SoxN-RA | 832..1719 | 904..17 | 4340 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SoxN-RB | 4026 | CG18024-RB | 1681..2568 | 904..17 | 4380 | 99.5 | Minus |
SoxN-RA | 4026 | CG18024-RA | 1681..2568 | 904..17 | 4380 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8827325..8828212 | 904..17 | 4380 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:10:47 has no hits.
BS01213.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:43 Download gff for
BS01213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SoxN-PA | 832..1719 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:31 Download gff for
BS01213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18024-PA | 832..1719 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:15:24 Download gff for
BS01213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SoxN-RA | 1681..2568 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:54:47 Download gff for
BS01213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SoxN-RA | 1681..2568 | 17..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:54:47 Download gff for
BS01213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8827325..8828212 | 17..904 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:15:24 Download gff for
BS01213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8827325..8828212 | 17..904 | 99 | | Minus |
BS01213.5prime Sequence
848 bp (777 high quality bases) assembled on 2005-11-29
> BS01213.5prime
GAAGTTATCAGTCGACATGCTGACCATGGAATCGGATATGAAAGGCAGCC
TGCTGCATGCCACCATGCCGCCGCATCACACAAGTGCCGCGTTGCACGGA
CATGCGGCATCGCCGTACTCCGCCCTAGCTCCCCTTATGAACCTGGGCCA
GTCGCACCTGACCCACTCGCAGCTGAGCCATCACAACCACCATCATCACC
ACATGAGCGCCCATATCGCGGCCAGCCAGAGTCCCAATCCGCTGAGCTCG
CTGCAGTCCTCGATGGCGAACACCCTCAATGGCAGCCAGGTGGGGCAGCA
GCAGCAGCAACAGCAGCAGCAGCAGAGCTCCCCGCTGCACAGCTCCAGCG
AATTGAGTCCCACCCAGAGCAGCATCGGAAGCCATCACATGACATCGCCG
GTCAGCCACCAGCAGCACACGCAACAGCAGCAGCACGGGCAGCAGCAGCA
TCTGGGCGCGGGATCTGCATTGAGCAGCCTAACTGGAGGATCCAGCAACA
ACAACAACAACAGCGCCACGGCCAACAAGAACCAACAGCACGCGGATCGT
GTGAAGCGGCCTATGAATGCGTTCATGGTTTGGTCACGGGGCCAGCGGAG
GAAGATGGCCTCGGACAACCCCAAGATGCACAACTCGGAGATCTCGAAGC
GACTGGGCGCCCAGTGGAAGGACCTCTCGGAATCGGAGAAGCGACCGTTC
ATCGACGAGGCCAAGCGCCTGANGGCGGTGCACATGAAGGAGCATCCGGA
CTACAAGTACCGGCCGCGCCGCAAGACTAAAACGCTGAACAAGAACAAGG
AGAAGTACCCAATGGGCGGCCTGATGCCCGGACAGACGGTGGGGCGGC
BS01213.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18024-PA | 1719 | SoxN-RA | 1..827 | 17..843 | 4066 | 99.6 | Plus |
CG5893-PA | 1149 | D-RA | 556..648 | 683..775 | 246 | 90.3 | Plus |
CG5893-PA | 1149 | D-RA | 490..543 | 617..670 | 145 | 90.7 | Plus |
CG15552-PA | 1590 | Sox100B-RA | 416..454 | 738..776 | 145 | 94.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SoxN-RB | 4026 | CG18024-RB | 850..1676 | 17..843 | 4094 | 99.6 | Plus |
SoxN-RA | 4026 | CG18024-RA | 850..1676 | 17..843 | 4094 | 99.6 | Plus |
D-RD | 2619 | CG5893-RD | 1633..1854 | 554..775 | 544 | 82.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8826494..8827320 | 17..843 | 4094 | 99.6 | Plus |
3L | 28110227 | 3L | 14176691..14176912 | 775..554 | 544 | 82.9 | Minus |
3L | 28110227 | 3L | 14106554..14106711 | 711..554 | 250 | 77.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:40:53 has no hits.
BS01213.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:44 Download gff for
BS01213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SoxN-PA | 1..831 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:33 Download gff for
BS01213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18024-PA | 1..831 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:09:42 Download gff for
BS01213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SoxN-RA | 850..1680 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:51 Download gff for
BS01213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SoxN-RA | 850..1680 | 17..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:51 Download gff for
BS01213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8826494..8827324 | 17..848 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:09:42 Download gff for
BS01213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8826494..8827324 | 17..848 | 99 | | Plus |
BS01213.complete Sequence
1751 bp assembled on 2008-08-15
GenBank Submission: FJ634563
> BS01213.complete
GAAGTTATCAGTCGACATGCTGACCATGGAATCGGATATGAAAGGCAGCC
TGCTGCATGCCACCATGCCGCCGCATCACACAAGTGCCGCGTTGCACGGA
CATGCGGCATCGCCGTACTCCGCCCTAGCTCCCCTTATGAACCTGGGCCA
GTCGCACCTGACCCACTCGCAGCTGAGCCATCACAACCACCATCATCACC
ACATGAGCGCCCATATCGCGGCCAGCCAGAGTCCCAATCCGCTGAGCTCG
CTGCAGTCCTCGATGGCGAACACCCTCAATGGCAGCCAGGTGGGGCAGCA
GCAGCAGCAACAGCAGCAGCAGCAGAGCTCCCCGCTGCACAGCTCCAGCG
AATTGAGTCCCACCCAGAGCAGCATCGGAAGCCATCACATGACATCGCCG
GTCAGCCACCAGCAGCACACGCAACAGCAGCAGCACGGGCAGCAGCAGCA
TCTGGGCGCGGGATCTGCATTGAGCAGCCTAACTGGAGGATCCAGCAACA
ACAACAACAACAGCGCCACGGCCAACAAGAACCAACAGCACGCGGATCGT
GTGAAGCGGCCTATGAATGCGTTCATGGTTTGGTCACGGGGCCAGCGGAG
GAAGATGGCCTCGGACAACCCCAAGATGCACAACTCGGAGATCTCGAAGC
GACTGGGCGCCCAGTGGAAGGACCTCTCGGAATCGGAGAAGCGACCGTTC
ATCGACGAGGCCAAGCGCCTGAGGGCGGTGCACATGAAGGAGCATCCGGA
CTACAAGTACCGGCCGCGCCGCAAGACTAAAACGCTGACCAAGACCAAGG
AGAAGTACCCAATGGGCGGCCTGATGCCCGGACAGACGGTGGGCGGCGGA
GCACCGGGTGAGCCGGTGACGCCCACGCGGGTGCAAGGTCAGCCTGGCCA
GAACCAGTCGCTAAACGGTAGTGGAGGCAGTGCAGCAGCGGCAGCGGCGG
CGGCAGCAGCGGCAGCGCAACAGGCGCGCCAGGATATGTACCAGATGAAC
GCGCCCAATGGATACATGCCCAATGGCTACATGATGCACGCAGATCCGGC
CGGAGCGGCAGCCTATCAGACCTCCTACATGGGCCAGCACTACGCGGCGC
AGCGGTACGACATGGGACACATGTACAACAACGGGTATGCGATGTACCAG
ACGGTGTCCGGCGGACAGACATCGCCGTACGGCAGCAGTCTCCAGCAGCC
CGGATCACCGTCGCCGTATGGCGGCAGTAGCTTGCAGCAGCAGCCCGGCA
GTCCGACTCCGTACGGCGGAGGTGGAGGCGGTGGCGGTCAGGTTTCCTGC
CAGAGCCACAGCCCCAGCGACTCGAGCATCAAGTCCGAACCGGTGTCGCC
CAGTCCCAGTGCCATAGCGCTCAACAACAACAACAACATCAACAACAATC
ACATCATGAAGCGGGAATACAGCTCTGCAGCGGCGGCAGCAGCAGCAGCA
GCAGCGGCAGCAGCCGCCGGCGGCGGCGAGCTGAATCACCTGATGAATAT
GTACCATCTGCCGGATGAGCAGCGCCACCTGCTGCACTATCAGACTGACT
CGCCCGATCTGCAGCAGCAGCACCAGTCGATGCAACAGCAGCAGCAGCAC
CTCCCGCAGCAACACCTTTCGCAGCAGCACCAACAGATCCCGCAGCAACA
CCATACCATGCAGCAGCAGCAGCAGCAACACCACCTGCAGCATCAGCAAT
CGCTGAGGGCGATGGCGCCGCTGGCACACATGTGAAAGCTTTCTAGACCA
T
BS01213.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SoxN-RB | 2286 | CG18024-PB | 1..1719 | 17..1735 | 8595 | 100 | Plus |
SoxN-RA | 1719 | CG18024-PA | 1..1719 | 17..1735 | 8595 | 100 | Plus |
D-RD | 1149 | CG5893-PD | 427..648 | 554..775 | 555 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SoxN-RB | 4026 | CG18024-RB | 850..2568 | 17..1735 | 8595 | 100 | Plus |
SoxN-RA | 4026 | CG18024-RA | 850..2568 | 17..1735 | 8595 | 100 | Plus |
D-RD | 2619 | CG5893-RD | 1633..1854 | 554..775 | 555 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8826494..8828212 | 17..1735 | 8595 | 100 | Plus |
3L | 28110227 | 3L | 14176691..14176912 | 775..554 | 555 | 83.3 | Minus |
3L | 28110227 | 3L | 14106554..14106711 | 711..554 | 250 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:40:49 has no hits.
BS01213.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:42 Download gff for
BS01213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SoxN-RA | 870..2588 | 17..1735 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:44 Download gff for
BS01213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SoxN-RA | 850..2567 | 17..1734 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:04 Download gff for
BS01213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SoxN-RA | 870..2587 | 17..1734 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:19 Download gff for
BS01213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SoxN-RA | 850..2567 | 17..1734 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:19 Download gff for
BS01213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8826494..8828211 | 17..1734 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:44 Download gff for
BS01213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8826494..8828211 | 17..1734 | 100 | | Plus |
BS01213.pep Sequence
Translation from 16 to 1734
> BS01213.pep
MLTMESDMKGSLLHATMPPHHTSAALHGHAASPYSALAPLMNLGQSHLTH
SQLSHHNHHHHHMSAHIAASQSPNPLSSLQSSMANTLNGSQVGQQQQQQQ
QQQSSPLHSSSELSPTQSSIGSHHMTSPVSHQQHTQQQQHGQQQHLGAGS
ALSSLTGGSSNNNNNSATANKNQQHADRVKRPMNAFMVWSRGQRRKMASD
NPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRP
RRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEPVTPTRVQGQPGQNQSLN
GSGGSAAAAAAAAAAAAQQARQDMYQMNAPNGYMPNGYMMHADPAGAAAY
QTSYMGQHYAAQRYDMGHMYNNGYAMYQTVSGGQTSPYGSSLQQPGSPSP
YGGSSLQQQPGSPTPYGGGGGGGGQVSCQSHSPSDSSIKSEPVSPSPSAI
ALNNNNNINNNHIMKREYSSAAAAAAAAAAAAAAGGGELNHLMNMYHLPD
EQRHLLHYQTDSPDLQQQHQSMQQQQQHLPQQHLSQQHQQIPQQHHTMQQ
QQQQHHLQHQQSLRAMAPLAHM*
BS01213.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SoxN-PB | 761 | CG18024-PB | 1..572 | 1..572 | 3037 | 100 | Plus |
SoxN-PA | 572 | CG18024-PA | 1..572 | 1..572 | 3037 | 100 | Plus |
Sox21b-PB | 571 | CG32139-PB | 70..554 | 45..487 | 519 | 32.3 | Plus |
Sox21b-PA | 571 | CG32139-PA | 70..554 | 45..487 | 519 | 32.3 | Plus |
Sox21b-PC | 587 | CG32139-PC | 70..554 | 45..487 | 519 | 32.3 | Plus |
SoxN-PB | 761 | CG18024-PB | 441..755 | 282..569 | 190 | 27.6 | Plus |