Clone Sequence Records
BS01215.3prime Sequence
917 bp (805 high quality bases) assembled on 2005-11-29
> BS01215.3prime
ATGGTCTAGAAAGCTTTCATGAAGTGGAGCACTTCCGCAGTTGTTCCTCC
TCTTTTTGCAGGATGCGTATCTTCATTGTCAGCTCCTCGACTCGAAGTCG
ATGCACCTCCTTCATGTACTTGAGTTCATCCTGCGCCTTGTTGAGTTCAA
TGCGCTTGGCTTCTGTGGCCAGCTGCTGCTCCTTGCAGCGCAGTTCAGCC
TCGCGGATTTTGAAGTAGTTCATTCGCTCTTCGAAGCTGTCCGCAGCGGT
AGCAGACGCATTAGTGGCTCCATTACCCCCTCCTCCGCCCAGGCTGGTGT
TGTTGATACTCACGGAGGAGGCTGTTGATGTGTTGACCGCCACTGAGTTC
GCAGATCCCGATGATGCAGTGGCCACAGGCACTGGAACCGCCGCCGGCAC
TGTCGTAGCAGCCGTAACTGTGGGCAGGGCGCTGAAGGTAAACGTGGGCG
TGGCGGCGGTTAGTTGCATCTTAACCGCCGCCGCCGCTGCTGCCTGTTGC
TGTTGGACGGCAACGGCCGCCTGTTGTTGCTGCTGCTGCTGGTGATGCAC
TTGGACGGCGGCGGCTAGTTGCTGATGTTGAGCGGCAGCAAGTTGCTGCT
GGGCAAGCTGTTGCGCCTGTGCTTGGGCCTGGGCTTGTGCCTGAGCTTGC
GCTTGAGCCTGCGCTTGGGCCTGGGCCTGCGCTTGAGCCTGCTGTTGCTG
CTGAGCCTGGTACTGGGCCAAAGTGATTTGCTGGGGCTTGATCTCACTAA
TGATCTGCTGATTGTAGCCGCCGGCGGTAATTGTGGCCATTGGATGCTGC
TGCGCCTGGGTGGGTATGGTGTGGATCTGGGNTGGCGGTAGCCTCTGGGT
GCTTAATCAATATGATCTCCTCGCGGGGGCGAGCTGTCTTGAAGTGCAGC
AGATCATTCAGAGTCAG
BS01215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7803-PA | 1728 | z-RA | 914..1728 | 831..17 | 4000 | 99.6 | Minus |
| CG7803-PB | 1728 | z-RB | 914..1728 | 831..17 | 4000 | 99.6 | Minus |
| CG7803-PA | 1728 | z-RA | 829..913 | 917..833 | 425 | 100 | Minus |
| CG7803-PB | 1728 | z-RB | 829..913 | 917..833 | 425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| z-RC | 2412 | CG7803-RC | 1170..2069 | 917..17 | 4435 | 99.6 | Minus |
| z-RB | 2412 | CG7803-RB | 1170..2069 | 917..17 | 4435 | 99.6 | Minus |
| z-RA | 2599 | CG7803-RA | 1357..2256 | 917..17 | 4435 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2449393..2450207 | 831..17 | 4030 | 99.6 | Minus |
| X | 23542271 | X | 2449246..2449327 | 917..836 | 410 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 19:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6900 | 703..522 | 236 | 63.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2518 | 715..522 | 218 | 61.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..6922 | 763..521 | 215 | 60 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..7059 | 715..410 | 211 | 57.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6679..6839 | 644..483 | 202 | 63.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2511 | 698..483 | 200 | 61.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2466 | 642..483 | 193 | 64.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..7000 | 802..521 | 187 | 59.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6913 | 662..475 | 186 | 60.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6952 | 579..352 | 180 | 59.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6688..6857 | 665..486 | 171 | 60.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2442 | 630..489 | 169 | 65.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2491 | 580..401 | 167 | 61.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6953 | 547..312 | 157 | 56.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1470..1599 | 631..498 | 153 | 64 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2442 | 614..480 | 150 | 63.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1121 | 546..483 | 137 | 74.2 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1154 | 600..523 | 134 | 69 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2385 | 553..477 | 128 | 67.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2651 | 579..521 | 125 | 72.9 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 974..1031 | 554..495 | 124 | 70 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3226..3310 | 603..522 | 120 | 66.7 | Minus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7954..7977 | 545..522 | 111 | 95.8 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9398..9421 | 545..522 | 111 | 95.8 | Minus |
BS01215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:46 Download gff for
BS01215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7803-PB | 829..1728 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:37 Download gff for
BS01215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7803-PB | 829..1728 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:27:13 Download gff for
BS01215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| z-RA | 1357..2256 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:08 Download gff for
BS01215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| z-RA | 1357..2256 | 17..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:08 Download gff for
BS01215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2449246..2449327 | 836..917 | 100 | -> | Minus |
| X | 2449390..2450207 | 17..835 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:27:13 Download gff for
BS01215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2343279..2343360 | 836..917 | 100 | -> | Minus |
| arm_X | 2343423..2344240 | 17..835 | 99 | | Minus |
BS01215.5prime Sequence
914 bp (678 high quality bases) assembled on 2005-11-29
> BS01215.5prime
GAAGTTATCAGTCGACATGTCGGCGCAGGGTGAAGGGGGCGGTGCTGGCG
GAAGCGGCGGCGGTGGTGCTGGTTCGGATGGAGGCGGCAATGCTGGCCAA
AGCTCCACGGGGAGTGGCACAGTGGCGGTCACCAACGGAGGCAACTCGTC
CGCCAAAAACCAGCTGCCGCTCACCCCGCGCTTCACCGCCGAGGAAAAGG
AGGTCCTGTACACCCTGTTCCATTTGCACGAGGAGGTCATCGATATCAAG
CATCGCAAGAAGCAGCGCAACAAGTACTCCGTCCGAGAAACATGGGACAA
GATCGTCAAGGACTTCAACTCGCACCCGCATGTGAGCGCCATGCGGAATA
TCAAGCAGATCCAGAAATTCTGGCTAAACTCCAGACTCCGCAAACAGTAT
CCGTACAGGGATGGCAGCTCCTCAAATCTCAGCTCTGGTAGCGCCAAAAT
CAGCTCCGTATCCGTGTCCGTTGCGTCGGCGGTGCCACAACAGCAGCAGC
AACAGCATCACCAGCAGCATGACAGCGTTAAGGTGGAACCCGAGTACCAG
ATTAGTCCCGATGCCTCCGAGCACAATCCACAGGCGGACACATTCGACGA
GATCGAGATGGATGCCAACGATGTGAGCGAGATTGACGAGGACCCAATGG
AGCAGCAGCAGCAACAGCAGCAGGAGGCTCAGGCCCAAGCCCAAGCCCAA
GCCCAAGCTCAGGCCCAAGTGCAATCCGCCGCCGCCGAGATGCAGAAGAT
GTCACAGGTGAACGCGGTGGCTGCGGCGGCGGCGGCCAATGCCACCATGA
TCAACACCCACCAGATAAACGTGGACCAGATCAGTGCTGAGAAGCTGACT
CTGAATGATCTGCTGCACTTTCAGACAGCTCGCCCCCGCGAGGAGATCAT
ATTGATTAAGCACC
BS01215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7803-PA | 1728 | z-RA | 1..898 | 17..914 | 4390 | 99.5 | Plus |
| CG7803-PB | 1728 | z-RB | 1..898 | 17..914 | 4390 | 99.5 | Plus |
| CG32466-PB | 2079 | rn-RB | 268..299 | 488..519 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| z-RC | 2412 | CG7803-RC | 342..1239 | 17..914 | 4430 | 99.6 | Plus |
| z-RB | 2412 | CG7803-RB | 342..1239 | 17..914 | 4430 | 99.6 | Plus |
| z-RA | 2599 | CG7803-RA | 529..1426 | 17..914 | 4430 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2448784..2449315 | 383..914 | 2600 | 99.2 | Plus |
| X | 23542271 | X | 2448297..2448664 | 17..384 | 1840 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 12:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2575 | 485..725 | 173 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6950 | 484..696 | 161 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2977 | 481..681 | 154 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6791 | 484..526 | 154 | 86.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6812 | 484..526 | 154 | 86.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6870 | 484..549 | 148 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6825 | 484..519 | 144 | 88.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6823..6862 | 484..523 | 137 | 82.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2258..2338 | 438..519 | 136 | 67.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1143 | 488..519 | 133 | 90.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2817..2989 | 485..669 | 128 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2358 | 484..526 | 127 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6957 | 487..733 | 127 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2391 | 484..526 | 127 | 79.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1118 | 484..526 | 127 | 79.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1117..1180 | 484..545 | 125 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1564 | 488..519 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1585 | 488..519 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6884 | 485..526 | 122 | 79.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2798..2832 | 484..518 | 121 | 82.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3324 | 488..521 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2431 | 484..513 | 114 | 86.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6908 | 393..526 | 113 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2627..2860 | 484..723 | 113 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2836 | 485..519 | 112 | 80 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1129..1163 | 484..518 | 112 | 80 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6597..6643 | 488..535 | 111 | 72.9 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8053..8099 | 488..535 | 111 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2484 | 488..518 | 110 | 83.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2360..2403 | 484..526 | 109 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6569 | 488..526 | 109 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6838..6873 | 484..519 | 108 | 77.8 | Plus |
BS01215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:47 Download gff for
BS01215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7803-PB | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:39 Download gff for
BS01215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7803-PB | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:22:56 Download gff for
BS01215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| z-RA | 525..1426 | 12..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:20:10 Download gff for
BS01215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| z-RA | 525..1426 | 12..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:20:10 Download gff for
BS01215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2448293..2448664 | 12..384 | 99 | -> | Plus |
| X | 2448786..2449315 | 385..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:22:56 Download gff for
BS01215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2342326..2342697 | 12..384 | 99 | -> | Plus |
| arm_X | 2342819..2343348 | 385..914 | 99 | | Plus |
BS01215.complete Sequence
1760 bp assembled on 2008-08-15
GenBank Submission: FJ634564
> BS01215.complete
GAAGTTATCAGTCGACATGTCGGCGCAGGGTGAAGGGGGCGGTGCTGGCG
GAAGCGGCGGCGGTGGTGCTGGTTCGGATGGAGGCGGCAATGCTGGCCAA
AGCTCCACGGGGAGTGGCACAGTGGCGGTCACCAACGGAGGCAACTCGTC
CGCCAAAAACCAGCTGCCGCTCACCCCGCGCTTCACCGCCGAGGAAAAGG
AGGTCCTGTACACCCTGTTCCATTTGCACGAGGAGGTCATCGATATCAAG
CATCGCAAGAAGCAGCGCAACAAGTACTCCGTCCGAGAAACATGGGACAA
GATCGTCAAGGACTTCAACTCGCACCCGCATGTGAGCGCCATGCGGAATA
TCAAGCAGATCCAGAAATTCTGGCTAAACTCCAGACTCCGCAAACAGTAT
CCGTACAGGGATGGCAGCTCCTCAAATCTCAGCTCTGGTAGCGCCAAAAT
CAGCTCCGTATCCGTGTCCGTTGCGTCGGCGGTGCCACAACAGCAGCAGC
AACAGCATCACCAGCAGCATGACAGCGTTAAGGTGGAACCCGAGTACCAG
ATTAGTCCCGATGCCTCCGAGCACAATCCACAGGCGGACACATTCGACGA
GATCGAGATGGATGCCAACGATGTGAGCGAGATTGACGAGGACCCAATGG
AGCAGCAGCAGCAACAGCAGCAGGAGGCTCAGGCCCAAGCCCAAGCCCAA
GCCCAAGCTCAGGCCCAAGTGCAATCCGCCGCCGCCGAGATGCAGAAGAT
GCAACAGGTGAACGCGGTGGCTGCGGCGGCGGCGGCCAATGCCACCATGA
TCAACACCCACCAGATAAACGTGGACCAGATCAGTGCTGAGAAGCTGACT
CTGAATGATCTGCTGCACTTCAAGACAGCTCGCCCCCGCGAGGAGATCAT
ATTGATTAAGCACCCAGAGGCTACCGCCACCCAGATCCACACCATACCCA
CCCAGGCGCAGCAGCATCCAATGGCCACAATTACCGCCGGCGGCTACAAT
CAGCAGATCATTAGTGAGATCAAGCCCCAGCAAATCACTTTGGCCCAGTA
CCAGGCTCAGCAGCAACAGCAGGCTCAAGCGCAGGCCCAGGCCCAAGCGC
AGGCTCAAGCGCAAGCTCAGGCACAAGCCCAGGCCCAAGCACAGGCGCAA
CAGCTTGCCCAGCAGCAACTTGCTGCCGCTCAACATCAGCAACTAGCCGC
CGCCGTCCAAGTGCATCACCAGCAGCAGCAGCAACAACAGGCGGCCGTTG
CCGTCCAACAGCAACAGGCAGCAGCGGCGGCGGCGGTTAAGATGCAACTA
ACCGCCGCCACGCCCACGTTTACCTTCAGCGCCCTGCCCACAGTTACGGC
TGCTACGACAGTGCCGGCGGCGGTTCCAGTGCCTGTGGCCACTGCATCAT
CGGGATCTGCGAACTCAGTGGCGGTCAACACATCAACAGCCTCCTCCGTG
AGTATCAACAACACCAGCCTGGGCGGAGGAGGGGGTAATGGAGCCACTAA
TGCGTCTGCTACCGCTGCGGACAGCTTCGAAGAGCGAATGAACTACTTCA
AAATCCGCGAGGCTGAACTGCGCTGCAAGGAGCAGCAGCTGGCCACAGAA
GCCAAGCGCATTGAACTCAACAAGGCGCAGGATGAACTCAAGTACATGAA
GGAGGTGCATCGACTTCGAGTCGAGGAGCTGACAATGAAGATACGCATCC
TGCAAAAAGAGGAGGAACAACTGCGGAAGTGCTCCACTTCATGAAAGCTT
TCTAGACCAT
BS01215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| z-RC | 1818 | CG7803-PC | 1..1728 | 17..1744 | 8595 | 99.8 | Plus |
| z-RB | 1728 | CG7803-PB | 1..1728 | 17..1744 | 8595 | 99.8 | Plus |
| z-RA | 1728 | CG7803-PA | 1..1728 | 17..1744 | 8595 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| z-RC | 2412 | CG7803-RC | 342..2069 | 17..1744 | 8595 | 99.8 | Plus |
| z-RB | 2412 | CG7803-RB | 342..2069 | 17..1744 | 8595 | 99.8 | Plus |
| z-RA | 2599 | CG7803-RA | 529..2256 | 17..1744 | 8595 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2449389..2450207 | 926..1744 | 4050 | 99.6 | Plus |
| X | 23542271 | X | 2448784..2449327 | 383..926 | 2720 | 100 | Plus |
| X | 23542271 | X | 2448297..2448664 | 17..384 | 1840 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6900 | 1058..1239 | 236 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2518 | 1046..1239 | 218 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..6922 | 998..1240 | 215 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..7059 | 1046..1351 | 211 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6679..6839 | 1117..1278 | 202 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2511 | 1063..1278 | 200 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2466 | 1119..1278 | 193 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2999 | 485..1165 | 189 | 52.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..7000 | 959..1240 | 187 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6913 | 1099..1286 | 186 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6952 | 1182..1409 | 180 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6688..6857 | 1096..1275 | 171 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2491 | 1181..1360 | 167 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..7099 | 484..858 | 162 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6953 | 1214..1449 | 157 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2977 | 481..681 | 154 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6791 | 484..526 | 154 | 86.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6812 | 484..526 | 154 | 86.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1470..1599 | 1130..1263 | 153 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2442 | 1147..1281 | 150 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6870 | 484..549 | 148 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6825 | 484..519 | 144 | 88.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6823..6862 | 484..523 | 137 | 82.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2258..2338 | 438..519 | 136 | 67.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1154 | 1161..1238 | 134 | 69 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1143 | 488..519 | 133 | 90.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2385 | 1208..1284 | 128 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2817..2989 | 485..669 | 128 | 58.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1118 | 484..526 | 127 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2651 | 928..1240 | 126 | 55.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1117..1180 | 484..545 | 125 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1564 | 488..519 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1585 | 488..519 | 124 | 87.5 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 974..1031 | 1207..1266 | 124 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6884 | 485..526 | 122 | 79.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2798..2832 | 484..518 | 121 | 82.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3226..3310 | 1158..1239 | 120 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2627..2966 | 484..834 | 116 | 53.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3324 | 488..521 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2431 | 484..513 | 114 | 86.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6908 | 393..526 | 113 | 57.7 | Plus |
BS01215.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:34 Download gff for
BS01215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| z-RB | 324..2055 | 12..1744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:36 Download gff for
BS01215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| z-RA | 529..2255 | 17..1743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:05 Download gff for
BS01215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| z-RB | 328..2054 | 17..1743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:21 Download gff for
BS01215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| z-RA | 529..2255 | 17..1743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:21 Download gff for
BS01215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2448297..2448664 | 17..384 | 100 | -> | Plus |
| X | 2448786..2449327 | 385..926 | 100 | -> | Plus |
| X | 2449390..2450206 | 927..1743 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:36 Download gff for
BS01215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2342330..2342697 | 17..384 | 100 | -> | Plus |
| arm_X | 2342819..2343360 | 385..926 | 100 | -> | Plus |
| arm_X | 2343423..2344239 | 927..1743 | 99 | | Plus |
BS01215.pep Sequence
Translation from 16 to 1743
> BS01215.pep
MSAQGEGGGAGGSGGGGAGSDGGGNAGQSSTGSGTVAVTNGGNSSAKNQL
PLTPRFTAEEKEVLYTLFHLHEEVIDIKHRKKQRNKYSVRETWDKIVKDF
NSHPHVSAMRNIKQIQKFWLNSRLRKQYPYRDGSSSNLSSGSAKISSVSV
SVASAVPQQQQQQHHQQHDSVKVEPEYQISPDASEHNPQADTFDEIEMDA
NDVSEIDEDPMEQQQQQQQEAQAQAQAQAQAQAQVQSAAAEMQKMQQVNA
VAAAAAANATMINTHQINVDQISAEKLTLNDLLHFKTARPREEIILIKHP
EATATQIHTIPTQAQQHPMATITAGGYNQQIISEIKPQQITLAQYQAQQQ
QQAQAQAQAQAQAQAQAQAQAQAQAQAQQLAQQQLAAAQHQQLAAAVQVH
HQQQQQQQAAVAVQQQQAAAAAAVKMQLTAATPTFTFSALPTVTAATTVP
AAVPVPVATASSGSANSVAVNTSTASSVSINNTSLGGGGGNGATNASATA
ADSFEERMNYFKIREAELRCKEQQLATEAKRIELNKAQDELKYMKEVHRL
RVEELTMKIRILQKEEEQLRKCSTS*
BS01215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| z-PC | 605 | CG7803-PC | 1..575 | 1..575 | 2864 | 100 | Plus |
| z-PB | 575 | CG7803-PB | 1..575 | 1..575 | 2864 | 100 | Plus |
| z-PA | 575 | CG7803-PA | 1..575 | 1..575 | 2864 | 100 | Plus |
| mbl-PJ | 789 | CG33197-PJ | 451..781 | 127..482 | 209 | 28.1 | Plus |
| mbl-PK | 803 | CG33197-PK | 465..795 | 127..482 | 209 | 28.1 | Plus |
| mbl-PJ | 789 | CG33197-PJ | 239..689 | 134..544 | 182 | 24.1 | Plus |
