Clone Sequence Records
BS01217.3prime Sequence
866 bp (842 high quality bases) assembled on 2005-11-29
> BS01217.3prime
ATGGTCTAGAAAGCTTCTACTTGATCCAGAGATACATTTTCCCCTGGATG
GTGTGCTTGACGGGATTGATCTTCTTCAGGATTTTCGTCATGGTCTCGAC
CAAACGGTCGCTGGAGACAGGCGTCTTCTTGTTCTTGAACTTGGTGAGCA
ACTCGGTGGCGGTCAGGGGCTTTCGCTTAAGATACCGACGCACCGCCTCC
TCGGTGATGCCGTAGTCCTCTACTTTGCCGCCAGAGAAGGAAGTGGGCAG
CGATGTGCTAATCTCGTTCTTAGGCCTCTTTGCTGGCGTGCTGGTGGGAC
TGTTGCTTGTGTCCGAAGCGGTGAGATCGCTGGGTAAGCTGTTCATCTTG
CGCTTGCTGGCATCCGTCGAGAGCGTTGGAGTGGCCGAGCGAGATTTATT
GGCATTGCTGCTGCTGGCGATGACCTTGCTGCTCGCAGCGCTCTCTTTCT
CCTTTTCCTTTTCCTTGTCTTTGTCCTTGACGACGACCTTCTTCTTGGGC
GGTCCGTTGCTAAGGTCGTCCTCGGAGTCTGTGCTGTCAGAGCTGAAGTC
TGTGGACGAGTCACCGCTGCCATTCGACTTGCCCTTCTTGTCGTCCTTTG
TGGGTTTCTTCTTCTTTTTGTCCTTGGATACCTCGTCCTTGCCCTTATCC
TTCTTTTTTTTCTCGCCGTCGGCATCCTCCTTGTCCGACTCATCAGACTT
CTTCTCATCATCCTCCTCTTCATCGGAGGTAAGCAGCTTGCGGAGCGCAT
CTTCCTCGGCCACGCCTTTCATGTCCTTGTCCACCTTTGCCTCTGGATCT
GGTTCGTCTTCACTGGAGCTGGTGTCGTAGTCCATTTCTCTGCCCTTCTC
GTCACCATCGTCCGAC
BS01217.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10281-PA | 1734 | TfIIFalpha-RA | 885..1734 | 866..17 | 4225 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIFalpha-RA | 1938 | CG10281-RA | 1014..1863 | 866..17 | 4235 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6381682..6382270 | 806..218 | 2945 | 100 | Minus |
3R | 32079331 | 3R | 6382328..6382529 | 218..17 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 6381546..6381605 | 866..807 | 285 | 98.3 | Minus |
Blast to na_te.dros performed 2015-02-12 05:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6886 | 433..280 | 126 | 58.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6904 | 433..277 | 120 | 57.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1512..1568 | 461..405 | 114 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6867 | 479..397 | 108 | 61.9 | Minus |
BS01217.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:49 Download gff for
BS01217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10281-PA | 885..1734 | 17..866 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:40 Download gff for
BS01217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10281-PA | 885..1734 | 17..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:13:06 Download gff for
BS01217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFalpha-RA | 1014..1863 | 17..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:40 Download gff for
BS01217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFalpha-RA | 1014..1863 | 17..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:40 Download gff for
BS01217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6381546..6381605 | 807..866 | 98 | -> | Minus |
3R | 6381682..6382269 | 219..806 | 100 | -> | Minus |
3R | 6382328..6382529 | 17..218 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:13:06 Download gff for
BS01217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2207268..2207327 | 807..866 | 98 | -> | Minus |
arm_3R | 2207404..2207991 | 219..806 | 100 | -> | Minus |
arm_3R | 2208050..2208251 | 17..218 | 100 | | Minus |
BS01217.5prime Sequence
795 bp (793 high quality bases) assembled on 2005-11-29
> BS01217.5prime
GAAGTTATCAGTCGACATGTCGAGCGCGTCAAAGTCGACGCCGAGCGCTG
CCAGCGGGAGCTCCACGTCCGCAGCTGCCGCCGCCGCAGCCTCTGTCGCC
TCAGGATCCGCCTCGTCATCCGCCAACGTGCAGGAGTTCAAGATCCGCGT
GCCCAAGATGCCCAAGAAGCACCATGTGATGCGGTTCAACGCCACGCTCA
ATGTGGATTTCGCGCAGTGGAGAAATGTGAAACTGGAGCGGGAAAACAAC
ATGAAGGAGTTCCGGGGCATGGAGGAGGATCAGCCCAAGTTTGGTGCTGG
ATCGGAGTACAACCGGGATCAGCGCGAGGAGGCGCGCCGCAAGAAGTTTG
GCATTATAGCGAGAAAGTACCGTCCAGAGGCACAGCCATGGATCCTTAAA
GTGGGTGGCAAGACTGGAAAGAAGTTCAAAGGCATCCGCGAGGGCGGCGT
AGGCGAGAATGCAGCTTTCTATGTGTTCACCCATGCACCAGACGGCGCCA
TTGAGGCATACCCCTTGACCGAGTGGTACAACTTCCAGCCTATTCAGCGC
TACAAATCGCTGTCGGCGGAGGAGGCCGAACAGGAATTTGGTCGGCGCAA
AAAGGTGATGAACTACTTCTCCCTTATGTTGCGAAAGCGTCTGCGCGGCG
ATGAGGAAGAGGAGCAGGATCCGGAGGAGGCTAAGCTAATTAAGGCAGCC
ACCAAAAAATCCAAGGAGCTCAAGATCACTGACATGGATGAATGGATTGA
TTCCGAGGATGAGTCGGATTCGGAGGACGAGGAGGATAAAAAGAA
BS01217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10281-PA | 1734 | TfIIFalpha-RA | 1..779 | 17..795 | 3895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIFalpha-RA | 1938 | CG10281-RA | 129..908 | 16..795 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6380685..6381440 | 40..795 | 3780 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:54:29 has no hits.
BS01217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:50 Download gff for
BS01217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10281-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:42 Download gff for
BS01217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10281-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:38:13 Download gff for
BS01217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFalpha-RA | 126..908 | 10..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:48:05 Download gff for
BS01217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFalpha-RA | 126..908 | 10..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:48:05 Download gff for
BS01217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6380686..6381440 | 41..795 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:38:13 Download gff for
BS01217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2206408..2207162 | 41..795 | 100 | | Plus |
BS01217.complete Sequence
1766 bp (1766 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634565
> BS01217.complete
GAAGTTATCAGTCGACATGTCGAGCGCGTCAAAGTCGACGCCGAGCGCTG
CCAGCGGGAGCTCCACGTCCGCAGCTGCCGCCGCCGCAGCCTCTGTCGCC
TCAGGATCCGCCTCGTCATCCGCCAACGTGCAGGAGTTCAAGATCCGCGT
GCCCAAGATGCCCAAGAAGCACCATGTGATGCGGTTCAACGCCACGCTCA
ATGTGGATTTCGCGCAGTGGAGAAATGTGAAACTGGAGCGGGAAAACAAC
ATGAAGGAGTTCCGGGGCATGGAGGAGGATCAGCCCAAGTTTGGTGCTGG
ATCGGAGTACAACCGGGATCAGCGCGAGGAGGCGCGCCGCAAGAAGTTTG
GCATTATAGCGAGAAAGTACCGTCCAGAGGCACAGCCATGGATCCTTAAA
GTGGGTGGCAAGACTGGAAAGAAGTTCAAAGGCATCCGCGAGGGCGGCGT
AGGCGAGAATGCAGCTTTCTATGTGTTCACCCATGCACCAGACGGCGCCA
TTGAGGCATACCCCTTGACCGAGTGGTACAACTTCCAGCCTATTCAGCGC
TACAAATCGCTGTCGGCGGAGGAGGCCGAACAGGAATTTGGTCGGCGCAA
AAAGGTGATGAACTACTTCTCCCTTATGTTGCGAAAGCGTCTGCGCGGCG
ATGAGGAAGAGGAGCAGGATCCGGAGGAGGCTAAGCTAATTAAGGCAGCC
ACCAAAAAATCCAAGGAGCTCAAGATCACTGACATGGATGAATGGATTGA
TTCCGAGGATGAGTCGGATTCGGAGGACGAGGAGGATAAAAAGAAGAAGG
AGCAGGAAGACAGCGACGATGGCAAGGCCAAGGGAAAGGGCAAGAAGGGC
GCAGACAAGAAAAAGAAAAAGAGGGATGTTGATGACGAGGCCTTCGAGGA
GTCGGACGATGGTGACGAGGAGGGCAGAGAAATGGACTACGACACCAGCT
CCAGTGAAGACGAACCAGATCCAGAGGCAAAGGTGGACAAGGACATGAAA
GGCGTGGCCGAGGAAGATGCGCTCCGCAAGCTGCTTACCTCCGATGAAGA
GGAGGATGATGAGAAGAAGTCTGATGAGTCGGACAAGGAGGATGCCGACG
GCGAGAAAAAAAAGAAGGATAAGGGCAAGGACGAGGTATCCAAGGACAAA
AAGAAGAAGAAACCCACAAAGGACGACAAGAAGGGCAAGTCGAATGGCAG
CGGTGACTCGTCCACAGACTTCAGCTCTGACAGCACAGACTCCGAGGACG
ACCTTAGCAACGGACCGCCCAAGAAGAAGGTCGTCGTCAAGGACAAAGAC
AAGGAAAAGGAAAAGGAGAAAGAGAGCGCTGCGAGCAGCAAGGTCATCGC
CAGCAGCAGCAATGCCAATAAATCTCGCTCGGCCACTCCAACGCTCTCGA
CGGATGCCAGCAAGCGCAAGATGAACAGCTTACCCAGCGATCTCACCGCT
TCGGACACAAGCAACAGTCCCACCAGCACGCCAGCAAAGAGGCCTAAGAA
CGAGATTAGCACATCGCTGCCCACTTCCTTCTCTGGCGGCAAAGTAGAGG
ACTACGGCATCACCGAGGAGGCGGTGCGTCGGTATCTTAAGCGAAAGCCC
CTGACCGCCACCGAGTTGCTCACCAAGTTCAAGAACAAGAAGACGCCTGT
CTCCAGCGACCGTTTGGTCGAGACCATGACGAAAATCCTGAAGAAGATCA
ATCCCGTCAAGCACACCATCCAGGGGAAAATGTATCTCTGGATCAAGTAG
AAGCTTTCTAGACCAT
BS01217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIFalpha-RA | 1734 | CG10281-PA | 1..1734 | 17..1750 | 8670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIFalpha-RA | 1938 | CG10281-RA | 129..1863 | 16..1750 | 8675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6380685..6381605 | 40..960 | 4605 | 100 | Plus |
3R | 32079331 | 3R | 6381682..6382270 | 961..1549 | 2945 | 100 | Plus |
3R | 32079331 | 3R | 6382328..6382529 | 1549..1750 | 1010 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1512..1568 | 1306..1362 | 114 | 66.7 | Plus |
BS01217.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:42 Download gff for
BS01217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFalpha-RA | 1..1734 | 17..1750 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:54 Download gff for
BS01217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFalpha-RA | 134..1871 | 10..1750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:33 Download gff for
BS01217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFalpha-RA | 130..1863 | 17..1750 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:42 Download gff for
BS01217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFalpha-RA | 134..1871 | 10..1750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:31 Download gff for
BS01217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFalpha-RA | 130..1863 | 17..1750 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:31 Download gff for
BS01217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6380596..6380619 | 17..40 | 100 | -> | Plus |
3R | 6380686..6381605 | 41..960 | 100 | -> | Plus |
3R | 6381682..6382269 | 961..1548 | 100 | -> | Plus |
3R | 6382328..6382529 | 1549..1750 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:33 Download gff for
BS01217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2206318..2206341 | 17..40 | 100 | -> | Plus |
arm_3R | 2206408..2207327 | 41..960 | 100 | -> | Plus |
arm_3R | 2207404..2207991 | 961..1548 | 100 | -> | Plus |
arm_3R | 2208050..2208251 | 1549..1750 | 100 | | Plus |
BS01217.pep Sequence
Translation from 16 to 1749
> BS01217.pep
MSSASKSTPSAASGSSTSAAAAAAASVASGSASSSANVQEFKIRVPKMPK
KHHVMRFNATLNVDFAQWRNVKLERENNMKEFRGMEEDQPKFGAGSEYNR
DQREEARRKKFGIIARKYRPEAQPWILKVGGKTGKKFKGIREGGVGENAA
FYVFTHAPDGAIEAYPLTEWYNFQPIQRYKSLSAEEAEQEFGRRKKVMNY
FSLMLRKRLRGDEEEEQDPEEAKLIKAATKKSKELKITDMDEWIDSEDES
DSEDEEDKKKKEQEDSDDGKAKGKGKKGADKKKKKRDVDDEAFEESDDGD
EEGREMDYDTSSSEDEPDPEAKVDKDMKGVAEEDALRKLLTSDEEEDDEK
KSDESDKEDADGEKKKKDKGKDEVSKDKKKKKPTKDDKKGKSNGSGDSST
DFSSDSTDSEDDLSNGPPKKKVVVKDKDKEKEKEKESAASSKVIASSSNA
NKSRSATPTLSTDASKRKMNSLPSDLTASDTSNSPTSTPAKRPKNEISTS
LPTSFSGGKVEDYGITEEAVRRYLKRKPLTATELLTKFKNKKTPVSSDRL
VETMTKILKKINPVKHTIQGKMYLWIK*
BS01217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIFalpha-PA | 577 | CG10281-PA | 1..577 | 1..577 | 2946 | 100 | Plus |
CG8108-PA | 919 | CG8108-PA | 246..463 | 188..410 | 220 | 29.7 | Plus |
CG8108-PB | 919 | CG8108-PB | 246..463 | 188..410 | 220 | 29.7 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 771..980 | 212..417 | 220 | 27.5 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 771..980 | 212..417 | 220 | 27.5 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 703..994 | 185..472 | 208 | 23.3 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 697..904 | 208..436 | 187 | 25.6 | Plus |
CG8108-PA | 919 | CG8108-PA | 245..475 | 217..444 | 167 | 26.7 | Plus |
CG8108-PB | 919 | CG8108-PB | 245..475 | 217..444 | 167 | 26.7 | Plus |