Clone BS01217 Report

Search the DGRC for BS01217

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:12
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptTfIIFalpha-RA
Protein status:BS01217.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01217.3prime Sequence

866 bp (842 high quality bases) assembled on 2005-11-29

> BS01217.3prime
ATGGTCTAGAAAGCTTCTACTTGATCCAGAGATACATTTTCCCCTGGATG
GTGTGCTTGACGGGATTGATCTTCTTCAGGATTTTCGTCATGGTCTCGAC
CAAACGGTCGCTGGAGACAGGCGTCTTCTTGTTCTTGAACTTGGTGAGCA
ACTCGGTGGCGGTCAGGGGCTTTCGCTTAAGATACCGACGCACCGCCTCC
TCGGTGATGCCGTAGTCCTCTACTTTGCCGCCAGAGAAGGAAGTGGGCAG
CGATGTGCTAATCTCGTTCTTAGGCCTCTTTGCTGGCGTGCTGGTGGGAC
TGTTGCTTGTGTCCGAAGCGGTGAGATCGCTGGGTAAGCTGTTCATCTTG
CGCTTGCTGGCATCCGTCGAGAGCGTTGGAGTGGCCGAGCGAGATTTATT
GGCATTGCTGCTGCTGGCGATGACCTTGCTGCTCGCAGCGCTCTCTTTCT
CCTTTTCCTTTTCCTTGTCTTTGTCCTTGACGACGACCTTCTTCTTGGGC
GGTCCGTTGCTAAGGTCGTCCTCGGAGTCTGTGCTGTCAGAGCTGAAGTC
TGTGGACGAGTCACCGCTGCCATTCGACTTGCCCTTCTTGTCGTCCTTTG
TGGGTTTCTTCTTCTTTTTGTCCTTGGATACCTCGTCCTTGCCCTTATCC
TTCTTTTTTTTCTCGCCGTCGGCATCCTCCTTGTCCGACTCATCAGACTT
CTTCTCATCATCCTCCTCTTCATCGGAGGTAAGCAGCTTGCGGAGCGCAT
CTTCCTCGGCCACGCCTTTCATGTCCTTGTCCACCTTTGCCTCTGGATCT
GGTTCGTCTTCACTGGAGCTGGTGTCGTAGTCCATTTCTCTGCCCTTCTC
GTCACCATCGTCCGAC

BS01217.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10281-PA 1734 TfIIFalpha-RA 885..1734 866..17 4225 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIFalpha-RA 1938 CG10281-RA 1014..1863 866..17 4235 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6381682..6382270 806..218 2945 100 Minus
3R 32079331 3R 6382328..6382529 218..17 1010 100 Minus
3R 32079331 3R 6381546..6381605 866..807 285 98.3 Minus
Blast to na_te.dros performed 2015-02-12 05:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6738..6886 433..280 126 58.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6759..6904 433..277 120 57.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1512..1568 461..405 114 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6785..6867 479..397 108 61.9 Minus

BS01217.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:49 Download gff for BS01217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10281-PA 885..1734 17..866 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:40 Download gff for BS01217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10281-PA 885..1734 17..866 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:13:06 Download gff for BS01217.3prime
Subject Subject Range Query Range Percent Splice Strand
TfIIFalpha-RA 1014..1863 17..866 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:40 Download gff for BS01217.3prime
Subject Subject Range Query Range Percent Splice Strand
TfIIFalpha-RA 1014..1863 17..866 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:40 Download gff for BS01217.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6381546..6381605 807..866 98 -> Minus
3R 6381682..6382269 219..806 100 -> Minus
3R 6382328..6382529 17..218 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:13:06 Download gff for BS01217.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2207268..2207327 807..866 98 -> Minus
arm_3R 2207404..2207991 219..806 100 -> Minus
arm_3R 2208050..2208251 17..218 100   Minus

BS01217.5prime Sequence

795 bp (793 high quality bases) assembled on 2005-11-29

> BS01217.5prime
GAAGTTATCAGTCGACATGTCGAGCGCGTCAAAGTCGACGCCGAGCGCTG
CCAGCGGGAGCTCCACGTCCGCAGCTGCCGCCGCCGCAGCCTCTGTCGCC
TCAGGATCCGCCTCGTCATCCGCCAACGTGCAGGAGTTCAAGATCCGCGT
GCCCAAGATGCCCAAGAAGCACCATGTGATGCGGTTCAACGCCACGCTCA
ATGTGGATTTCGCGCAGTGGAGAAATGTGAAACTGGAGCGGGAAAACAAC
ATGAAGGAGTTCCGGGGCATGGAGGAGGATCAGCCCAAGTTTGGTGCTGG
ATCGGAGTACAACCGGGATCAGCGCGAGGAGGCGCGCCGCAAGAAGTTTG
GCATTATAGCGAGAAAGTACCGTCCAGAGGCACAGCCATGGATCCTTAAA
GTGGGTGGCAAGACTGGAAAGAAGTTCAAAGGCATCCGCGAGGGCGGCGT
AGGCGAGAATGCAGCTTTCTATGTGTTCACCCATGCACCAGACGGCGCCA
TTGAGGCATACCCCTTGACCGAGTGGTACAACTTCCAGCCTATTCAGCGC
TACAAATCGCTGTCGGCGGAGGAGGCCGAACAGGAATTTGGTCGGCGCAA
AAAGGTGATGAACTACTTCTCCCTTATGTTGCGAAAGCGTCTGCGCGGCG
ATGAGGAAGAGGAGCAGGATCCGGAGGAGGCTAAGCTAATTAAGGCAGCC
ACCAAAAAATCCAAGGAGCTCAAGATCACTGACATGGATGAATGGATTGA
TTCCGAGGATGAGTCGGATTCGGAGGACGAGGAGGATAAAAAGAA

BS01217.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10281-PA 1734 TfIIFalpha-RA 1..779 17..795 3895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIFalpha-RA 1938 CG10281-RA 129..908 16..795 3900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6380685..6381440 40..795 3780 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:54:29 has no hits.

BS01217.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:50 Download gff for BS01217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10281-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:42 Download gff for BS01217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10281-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:38:13 Download gff for BS01217.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIFalpha-RA 126..908 10..795 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:48:05 Download gff for BS01217.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIFalpha-RA 126..908 10..795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:48:05 Download gff for BS01217.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6380686..6381440 41..795 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:38:13 Download gff for BS01217.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2206408..2207162 41..795 100   Plus

BS01217.complete Sequence

1766 bp (1766 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ634565

> BS01217.complete
GAAGTTATCAGTCGACATGTCGAGCGCGTCAAAGTCGACGCCGAGCGCTG
CCAGCGGGAGCTCCACGTCCGCAGCTGCCGCCGCCGCAGCCTCTGTCGCC
TCAGGATCCGCCTCGTCATCCGCCAACGTGCAGGAGTTCAAGATCCGCGT
GCCCAAGATGCCCAAGAAGCACCATGTGATGCGGTTCAACGCCACGCTCA
ATGTGGATTTCGCGCAGTGGAGAAATGTGAAACTGGAGCGGGAAAACAAC
ATGAAGGAGTTCCGGGGCATGGAGGAGGATCAGCCCAAGTTTGGTGCTGG
ATCGGAGTACAACCGGGATCAGCGCGAGGAGGCGCGCCGCAAGAAGTTTG
GCATTATAGCGAGAAAGTACCGTCCAGAGGCACAGCCATGGATCCTTAAA
GTGGGTGGCAAGACTGGAAAGAAGTTCAAAGGCATCCGCGAGGGCGGCGT
AGGCGAGAATGCAGCTTTCTATGTGTTCACCCATGCACCAGACGGCGCCA
TTGAGGCATACCCCTTGACCGAGTGGTACAACTTCCAGCCTATTCAGCGC
TACAAATCGCTGTCGGCGGAGGAGGCCGAACAGGAATTTGGTCGGCGCAA
AAAGGTGATGAACTACTTCTCCCTTATGTTGCGAAAGCGTCTGCGCGGCG
ATGAGGAAGAGGAGCAGGATCCGGAGGAGGCTAAGCTAATTAAGGCAGCC
ACCAAAAAATCCAAGGAGCTCAAGATCACTGACATGGATGAATGGATTGA
TTCCGAGGATGAGTCGGATTCGGAGGACGAGGAGGATAAAAAGAAGAAGG
AGCAGGAAGACAGCGACGATGGCAAGGCCAAGGGAAAGGGCAAGAAGGGC
GCAGACAAGAAAAAGAAAAAGAGGGATGTTGATGACGAGGCCTTCGAGGA
GTCGGACGATGGTGACGAGGAGGGCAGAGAAATGGACTACGACACCAGCT
CCAGTGAAGACGAACCAGATCCAGAGGCAAAGGTGGACAAGGACATGAAA
GGCGTGGCCGAGGAAGATGCGCTCCGCAAGCTGCTTACCTCCGATGAAGA
GGAGGATGATGAGAAGAAGTCTGATGAGTCGGACAAGGAGGATGCCGACG
GCGAGAAAAAAAAGAAGGATAAGGGCAAGGACGAGGTATCCAAGGACAAA
AAGAAGAAGAAACCCACAAAGGACGACAAGAAGGGCAAGTCGAATGGCAG
CGGTGACTCGTCCACAGACTTCAGCTCTGACAGCACAGACTCCGAGGACG
ACCTTAGCAACGGACCGCCCAAGAAGAAGGTCGTCGTCAAGGACAAAGAC
AAGGAAAAGGAAAAGGAGAAAGAGAGCGCTGCGAGCAGCAAGGTCATCGC
CAGCAGCAGCAATGCCAATAAATCTCGCTCGGCCACTCCAACGCTCTCGA
CGGATGCCAGCAAGCGCAAGATGAACAGCTTACCCAGCGATCTCACCGCT
TCGGACACAAGCAACAGTCCCACCAGCACGCCAGCAAAGAGGCCTAAGAA
CGAGATTAGCACATCGCTGCCCACTTCCTTCTCTGGCGGCAAAGTAGAGG
ACTACGGCATCACCGAGGAGGCGGTGCGTCGGTATCTTAAGCGAAAGCCC
CTGACCGCCACCGAGTTGCTCACCAAGTTCAAGAACAAGAAGACGCCTGT
CTCCAGCGACCGTTTGGTCGAGACCATGACGAAAATCCTGAAGAAGATCA
ATCCCGTCAAGCACACCATCCAGGGGAAAATGTATCTCTGGATCAAGTAG
AAGCTTTCTAGACCAT

BS01217.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIFalpha-RA 1734 CG10281-PA 1..1734 17..1750 8670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIFalpha-RA 1938 CG10281-RA 129..1863 16..1750 8675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6380685..6381605 40..960 4605 100 Plus
3R 32079331 3R 6381682..6382270 961..1549 2945 100 Plus
3R 32079331 3R 6382328..6382529 1549..1750 1010 100 Plus
Blast to na_te.dros performed 2014-11-27 16:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1512..1568 1306..1362 114 66.7 Plus

BS01217.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:42 Download gff for BS01217.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIFalpha-RA 1..1734 17..1750 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:54 Download gff for BS01217.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIFalpha-RA 134..1871 10..1750 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:33 Download gff for BS01217.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIFalpha-RA 130..1863 17..1750 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:42 Download gff for BS01217.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIFalpha-RA 134..1871 10..1750 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:31 Download gff for BS01217.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIFalpha-RA 130..1863 17..1750 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:31 Download gff for BS01217.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6380596..6380619 17..40 100 -> Plus
3R 6380686..6381605 41..960 100 -> Plus
3R 6381682..6382269 961..1548 100 -> Plus
3R 6382328..6382529 1549..1750 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:33 Download gff for BS01217.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2206318..2206341 17..40 100 -> Plus
arm_3R 2206408..2207327 41..960 100 -> Plus
arm_3R 2207404..2207991 961..1548 100 -> Plus
arm_3R 2208050..2208251 1549..1750 100   Plus

BS01217.pep Sequence

Translation from 16 to 1749

> BS01217.pep
MSSASKSTPSAASGSSTSAAAAAAASVASGSASSSANVQEFKIRVPKMPK
KHHVMRFNATLNVDFAQWRNVKLERENNMKEFRGMEEDQPKFGAGSEYNR
DQREEARRKKFGIIARKYRPEAQPWILKVGGKTGKKFKGIREGGVGENAA
FYVFTHAPDGAIEAYPLTEWYNFQPIQRYKSLSAEEAEQEFGRRKKVMNY
FSLMLRKRLRGDEEEEQDPEEAKLIKAATKKSKELKITDMDEWIDSEDES
DSEDEEDKKKKEQEDSDDGKAKGKGKKGADKKKKKRDVDDEAFEESDDGD
EEGREMDYDTSSSEDEPDPEAKVDKDMKGVAEEDALRKLLTSDEEEDDEK
KSDESDKEDADGEKKKKDKGKDEVSKDKKKKKPTKDDKKGKSNGSGDSST
DFSSDSTDSEDDLSNGPPKKKVVVKDKDKEKEKEKESAASSKVIASSSNA
NKSRSATPTLSTDASKRKMNSLPSDLTASDTSNSPTSTPAKRPKNEISTS
LPTSFSGGKVEDYGITEEAVRRYLKRKPLTATELLTKFKNKKTPVSSDRL
VETMTKILKKINPVKHTIQGKMYLWIK*

BS01217.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIFalpha-PA 577 CG10281-PA 1..577 1..577 2946 100 Plus
CG8108-PA 919 CG8108-PA 246..463 188..410 220 29.7 Plus
CG8108-PB 919 CG8108-PB 246..463 188..410 220 29.7 Plus
l(2)01289-PG 1191 CG9432-PG 771..980 212..417 220 27.5 Plus
l(2)01289-PM 1193 CG9432-PM 771..980 212..417 220 27.5 Plus
l(2)01289-PG 1191 CG9432-PG 703..994 185..472 208 23.3 Plus
l(2)01289-PG 1191 CG9432-PG 697..904 208..436 187 25.6 Plus
CG8108-PA 919 CG8108-PA 245..475 217..444 167 26.7 Plus
CG8108-PB 919 CG8108-PB 245..475 217..444 167 26.7 Plus