Clone Sequence Records
BS01221.3prime Sequence
868 bp (770 high quality bases) assembled on 2005-11-29
> BS01221.3prime
ATGGTCTAGAAAGCTTTTAAACGTCGGCCGGTTTGAACTGCGGATTGTGC
GAGCGTGCCATCTTGGCGCGCAGCCACTCGTCCGCGTGACGCTGCTTAAT
GTGGACATACATATTGGAGCGGGAACGGCACTCCTTGGGGCAATGCGGAC
AGTTGTACAGCTGCAGGCCCGTGTGGATGGCCATGTGCTCGTCCAGGTTG
CGCTGCTGCTTGAAGGTTTTCTCGCAGAACGTGCACTGCAGATTGGTGGT
CAGCTTGTGGGCATATTTGACGTGACCGCGGAGCGCTGTGCGCGATGTGC
AGGTCTTGCCACAATGCGGACACACGGTGTCCGTGCTGTCGTGTGTGAAG
CGGTGCAGGCGCAAGCTGTGCTCGTTCTTCAGCCAAACACGGCAGATGGG
GCACTCCACAGCCGGGGCCACGACGCCCTGGTGCTCCAGCAAATGGCGCT
CGAAGGAGGGCTTGAACTTGAACTTCTTCCCGCAAATGTCGCAAACGTGA
CGATGCAGGTCTTCGTGGATGGATTGGATGTGCCTTCGCAGGCGGTGTAC
ATTGGCAAAGCTTTTGCAGCAGATCTCGCAGGTGTGCTCCAGTTGATCGG
TGTCGTGCTTGGCCAGATGATTGGCCATACGGCGCTCGCTGCTGAAGGTG
CGTTCGCACTTGGGGCACGGGAACTTGAGCACCTTGCCGATTTGAGCCAC
CTTGTTGTGCACCGTCTCGATATGAGTGGCCAAGTAGTCCTGCGAGTTGA
GCGACTTCTTGCAAATGGTGCAGGTAAATAGCTTGGGGTTGATATGTTTG
CGGATGTGGTCCATCAGCTTGGAAGCGCGTGTAAAGACTTTTGCGCAGCA
CTTGATGTAGTACTCGCG
BS01221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2889-PA | 1746 | CG2889-RA | 895..1746 | 868..17 | 4210 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2889-RB | 2098 | CG2889-RB | 1197..2049 | 868..16 | 4235 | 99.8 | Minus |
| CG2889-RA | 2173 | CG2889-RA | 1272..2124 | 868..16 | 4235 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:49:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10476606..10477152 | 562..16 | 2735 | 100 | Minus |
| X | 23542271 | X | 10476183..10476395 | 773..561 | 1065 | 100 | Minus |
| X | 23542271 | X | 10476031..10476125 | 868..774 | 445 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:49:30 has no hits.
BS01221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:53 Download gff for
BS01221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-PA | 895..1746 | 17..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:47 Download gff for
BS01221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-PA | 895..1746 | 17..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:29:52 Download gff for
BS01221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-RA | 1272..2127 | 12..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:58 Download gff for
BS01221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-RA | 1272..2127 | 12..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:58 Download gff for
BS01221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10476031..10476125 | 774..868 | 97 | -> | Minus |
| X | 10476183..10476395 | 561..773 | 100 | -> | Minus |
| X | 10476608..10477155 | 12..560 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:29:52 Download gff for
BS01221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10370064..10370158 | 774..868 | 97 | -> | Minus |
| arm_X | 10370216..10370428 | 561..773 | 100 | -> | Minus |
| arm_X | 10370641..10371188 | 12..560 | 99 | | Minus |
BS01221.5prime Sequence
769 bp (768 high quality bases) assembled on 2005-11-29
> BS01221.5prime
GAAGTTATCAGTCGACATGATTTGTCGCCTTTGCCTGCGATGTCTTAGTC
CCGGAAGCGCTGTCTTCCTCTTTGAGACGGACGATACGCTTGCGGAGACG
CGCCTGGTCAAGATGATTGCGAAGTTTCTGCAGCTGGAGATCCTACCAGA
CGACGGCATCTCGACCAGCGTCTGTACCGAGTGCTGTGAGCATCTGGAGG
ACTTCAATGGCTTCTGGCAGCTGGTGGAGCAGAAGCAGTGCTCACTCAAG
AAGGAGTTCCTTACCGTGGACGTCGACTGTGCGGCCATGAAGTGGACGGG
CGGTGTGGACGTGGACGTCAACATCGACGAACTGCCGCTGGCGGCTGGCG
ACATGGACGAGAAACCGTTGGACCTGCACAACCTTAGTCTGCTGGGAAGC
GTGCTGGACGTGAATGTGGACAGTGTGGAAGTCAGGGAACCGATCAAGGA
GCAGCTGCCCTGCGAGGAGGAGGAGGACGAGAAGCCCTGCCTGCAAGCTA
GTGATAGCGAACCGGAGGTGACCGAGGGGCAGCCGGAATCTGAATCTGAC
TCCTCAGATGATGAACCCCTGGTCCGTCTGAAATCGAAAATGAAGCCCAA
GCGCAAAACCTCGGCACGTTCCTCCAAGGATCAGGGTCCGATATCGCTGC
AGCAGGAGCTTGCAGATCTGCTCGACGATGGTGGCAAGCGTCGGCGCAGG
AAGGCACCTGACCAGCGAACAACCACCGAGTCGCAGGAGTCCGAGCTACA
GGCCGTTCTCGAGCGCAAG
BS01221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2889-PA | 1746 | CG2889-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2889-RB | 2098 | CG2889-RB | 299..1055 | 13..769 | 3770 | 99.9 | Plus |
| CG2889-RA | 2173 | CG2889-RA | 374..1130 | 13..769 | 3770 | 99.9 | Plus |
| CG12219-RA | 2018 | CG12219-RA | 261..350 | 149..238 | 180 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10475200..10475622 | 138..560 | 2115 | 100 | Plus |
| X | 23542271 | X | 10475680..10475889 | 560..769 | 1050 | 100 | Plus |
| X | 23542271 | X | 10475014..10475140 | 13..139 | 620 | 99.2 | Plus |
| X | 23542271 | X | 6300870..6300959 | 238..149 | 180 | 80 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:36:35 has no hits.
BS01221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:54 Download gff for
BS01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:48 Download gff for
BS01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:09:06 Download gff for
BS01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-RA | 367..1130 | 4..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:18 Download gff for
BS01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-RA | 367..1130 | 4..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:18 Download gff for
BS01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10475007..10475140 | 4..139 | 96 | -> | Plus |
| X | 10475202..10475622 | 140..560 | 100 | -> | Plus |
| X | 10475681..10475889 | 561..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:09:06 Download gff for
BS01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10369040..10369173 | 4..139 | 96 | -> | Plus |
| arm_X | 10369235..10369655 | 140..560 | 100 | -> | Plus |
| arm_X | 10369714..10369922 | 561..769 | 100 | | Plus |
BS01221.complete Sequence
1778 bp (1778 high quality bases) assembled on 2005-10-25
GenBank Submission: FJ634566
> BS01221.complete
GAAGTTATCAGTCGACATGATTTGTCGCCTTTGCCTGCGATGTCTTAGTC
CCGGAAGCGCTGTCTTCCTCTTTGAGACGGACGATACGCTTGCGGAGACG
CGCCTGGTCAAGATGATTGCGAAGTTTCTGCAGCTGGAGATCCTACCAGA
CGACGGCATCTCGACCAGCGTCTGTACCGAGTGCTGTGAGCATCTGGAGG
ACTTCAATGGCTTCTGGCAGCTGGTGGAGCAGAAGCAGTGCTCACTCAAG
AAGGAGTTCCTTACCGTGGACGTCGACTGTGCGGCCATGAAGTGGACGGG
CGGTGTGGACGTGGACGTCAACATCGACGAACTGCCGCTGGCGGCTGGCG
ACATGGACGAGAAACCGTTGGACCTGCACAACCTTAGTCTGCTGGGAAGC
GTGCTGGACGTGAATGTGGACAGTGTGGAAGTCAGGGAACCGATCAAGGA
GCAGCTGCCCTGCGAGGAGGAGGAGGACGAGAAGCCCTGCCTGCAAGCTA
GTGATAGCGAACCGGAGGTGACCGAGGGGCAGCCGGAATCTGAATCTGAC
TCCTCAGATGATGAACCCCTGGTCCGTCTGAAATCGAAAATGAAGCCCAA
GCGCAAAACCTCGGCACGTTCCTCCAAGGATCAGGGTCCGATATCGCTGC
AGCAGGAGCTTGCAGATCTGCTCGACGATGGTGGCAAGCGTCGGCGCAGG
AAGGCACCTGACCAGCGAACAACCACCGAGTCGCAGGAGTCCGAGCTACA
GGCCGTTCTCGAGCGCAAGCCCAAGGGCTGCTCCCGTGCTCAGCTGGCCA
AGAGCTACGAGAAGGCCATTGCTAGCTACATGAGTGCAAGCTGCGACCTG
TGCGAATTTAGTGCTCCCTACCTATCCGAATTGAAGACCCACTTCCTGGA
GGTGCACCAGCGCGAGTACTACATCAAGTGCTGCGGCAAAGTCTTTACAC
GCGCTTCCAAGCTGATGGACCACATCCGCAAACATATCAACCCCAAGCTA
TTTACCTGCACCATTTGCAAGAAGTCGCTCAACTCGCAGGACTACTTGGC
CACTCATATCGAGACGGTGCACAACAAGGTGGCTCAAATCGGCAAGGTGC
TCAAGTTCCCGTGCCCCAAGTGCGAACGCACCTTCAGCAGCGAGCGCCGT
ATGGCCAATCATCTGGCCAAGCACGACACCGATCAACTGGAGCACACCTG
CGAGATCTGCTGCAAAAGCTTTGCCAATGTACACCGCCTGCGAAGGCACA
TCCAATCCATCCACGAAGACCTGCATCGTCACGTTTGCGACATTTGCGGG
AAGAAGTTCAAGTTCAAGCCCTCCTTCGAGCGCCATTTGCTGGAGCACCA
GGGCGTCGTGGCCCCGGCTGTGGAGTGCCCCATCTGCCGTGTTTGGCTGA
AGAACGAGCACAGCTTGCGCCTGCACCGCTTCACACACGACAGCACGGAC
ACCGTGTGTCCGCATTGTGGCAAGACCTGCACATCGCGCACAGCGCTCCG
CGGTCACGTCAAATATGCCCACAAGCTGACCACCAATCTGCAGTGCACGT
TCTGCGAGAAAACCTTCAAGCAGCAGCGCAACCTGGACGAGCACATGGCC
ATCCACACGGGCCTGCAGCTGTACAACTGTCCGCATTGCCCCAAGGAGTG
CCGTTCCCGCTCCAATATGTATGTCCACATTAAGCAGCGTCACGCGGACG
AGTGGCTGCGCGCCAAGATGGCACGCTCGCACAATCCGCAGTTCAAACCG
GCCGACGTTTAAAAGCTTTCTAGACCAT
BS01221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:17:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2889-RB | 1746 | CG2889-PB | 1..1746 | 17..1762 | 8730 | 100 | Plus |
| CG2889-RA | 1746 | CG2889-PA | 1..1746 | 17..1762 | 8730 | 100 | Plus |
| CG12219-RA | 1689 | CG12219-PA | 175..264 | 149..238 | 180 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2889-RB | 2098 | CG2889-RB | 299..2049 | 13..1763 | 8740 | 99.9 | Plus |
| CG2889-RA | 2173 | CG2889-RA | 374..2124 | 13..1763 | 8740 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10476606..10477152 | 1217..1763 | 2735 | 100 | Plus |
| X | 23542271 | X | 10475680..10476125 | 560..1005 | 2230 | 100 | Plus |
| X | 23542271 | X | 10475200..10475622 | 138..560 | 2115 | 100 | Plus |
| X | 23542271 | X | 10476183..10476395 | 1006..1218 | 1065 | 100 | Plus |
| X | 23542271 | X | 10475014..10475140 | 13..139 | 620 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:17:18 has no hits.
BS01221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:11 Download gff for
BS01221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-RA | 1..1746 | 17..1762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:48 Download gff for
BS01221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-RA | 367..2127 | 4..1767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:55 Download gff for
BS01221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-RA | 378..2121 | 17..1760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:12 Download gff for
BS01221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-RA | 367..2127 | 4..1767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:46 Download gff for
BS01221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-RA | 378..2121 | 17..1760 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:46 Download gff for
BS01221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10475018..10475140 | 17..139 | 100 | -> | Plus |
| X | 10475202..10475622 | 140..560 | 100 | -> | Plus |
| X | 10475681..10476125 | 561..1005 | 100 | -> | Plus |
| X | 10476183..10476395 | 1006..1218 | 100 | -> | Plus |
| X | 10476608..10477149 | 1219..1760 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:55 Download gff for
BS01221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10369051..10369173 | 17..139 | 100 | -> | Plus |
| arm_X | 10369235..10369655 | 140..560 | 100 | -> | Plus |
| arm_X | 10369714..10370158 | 561..1005 | 100 | -> | Plus |
| arm_X | 10370216..10370428 | 1006..1218 | 100 | -> | Plus |
| arm_X | 10370641..10371182 | 1219..1760 | 100 | | Plus |
BS01221.pep Sequence
Translation from 16 to 1761
> BS01221.pep
MICRLCLRCLSPGSAVFLFETDDTLAETRLVKMIAKFLQLEILPDDGIST
SVCTECCEHLEDFNGFWQLVEQKQCSLKKEFLTVDVDCAAMKWTGGVDVD
VNIDELPLAAGDMDEKPLDLHNLSLLGSVLDVNVDSVEVREPIKEQLPCE
EEEDEKPCLQASDSEPEVTEGQPESESDSSDDEPLVRLKSKMKPKRKTSA
RSSKDQGPISLQQELADLLDDGGKRRRRKAPDQRTTTESQESELQAVLER
KPKGCSRAQLAKSYEKAIASYMSASCDLCEFSAPYLSELKTHFLEVHQRE
YYIKCCGKVFTRASKLMDHIRKHINPKLFTCTICKKSLNSQDYLATHIET
VHNKVAQIGKVLKFPCPKCERTFSSERRMANHLAKHDTDQLEHTCEICCK
SFANVHRLRRHIQSIHEDLHRHVCDICGKKFKFKPSFERHLLEHQGVVAP
AVECPICRVWLKNEHSLRLHRFTHDSTDTVCPHCGKTCTSRTALRGHVKY
AHKLTTNLQCTFCEKTFKQQRNLDEHMAIHTGLQLYNCPHCPKECRSRSN
MYVHIKQRHADEWLRAKMARSHNPQFKPADV*
BS01221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2889-PB | 581 | CG2889-PB | 1..581 | 1..581 | 3131 | 100 | Plus |
| CG2889-PA | 581 | CG2889-PA | 1..581 | 1..581 | 3131 | 100 | Plus |
| CG15073-PA | 580 | CG15073-PA | 1..527 | 1..571 | 631 | 28 | Plus |
| grau-PA | 570 | CG33133-PA | 3..531 | 2..563 | 581 | 28.4 | Plus |
| CG11695-PA | 544 | CG11695-PA | 1..498 | 1..560 | 577 | 29.5 | Plus |
