Clone BS01223 Report

Search the DGRC for BS01223

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:12
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptMnt-RA
Protein status:BS01223.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01223.3prime Sequence

903 bp (848 high quality bases) assembled on 2005-11-29

> BS01223.3prime
ATGGTCTAGAAAGCTTTTACTGTGCCGTTGTCCCAGCACTGAGCCTCAGG
AAAGTGTAATTGCGATCCTTATCGGCCTGATGGAACCCATTCACTGAACC
TCCGCCAGCTGGCACAGCAGCGCCCGCACCGCCATGGAATTTTAGGCCAA
CACTACGGGCTGTGGCCGTGGGCGTGATTATCTGCTGTTGTTGCGTGGGC
GACGAAGAACTGGACGACGAACTGGAAGATGATGATGATGAGGAGGATGA
GGACGATGATGAGGAGCCGCCCATAAATGAGGTCGACAACGAGACGCCAC
TGGACGAGGAGCTGGGCGACGGCGATGGAGTCGATGGCGTTGGCGAGCCA
CGTGTGATGGTGGCTCCAGTTGTGGCTCCTATTCCCGATGGACTGCCCGC
TGGGCTGCCGTTGTGGTGCTGGTGCAACTGATGATTGTGGCCTCCCGTTG
GTGAGATTGCCAGCATGTTGCCGTTGCTGCCATTGCCATTTTTAATTGTC
ATGATGCCCATGGCCGGAGTCAGTGTGGTTGTTGCACCTCCTGTGTGGTT
GCCATTGTGTTTGCTGCTGGCTGCTGCGGTTGCTCCTCCATTAGTTTTGT
TTATCACAGTTGTTAGCTGCCCAGTGGCACAGGCGTTGCCTGCATCGAAT
AGAATTGTGGTTCCATTGTGGCCACTGGCCGCCGTTGGTGGTGCTGTTGT
GGCTGTTGTTGCCAGACAAACTGCTTTGTCGGCCTGTGGAATGATTTGCT
GATCGGTGGGCGGCGATTCCCTCCTTAAGCTCAGTTGCTTTAGCCGCTTC
TGCAGCTCGATCTTCTGCTTGGCCAGTTTCTCTATCTTCGCCTCCTGCTC
GCAAACTTCATGACTCAAGGAATTGACATATTTGTGGGCCGTGTCAAGTA
TTG

BS01223.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13316-PC 1749 Mnt-RC 863..1749 903..17 4435 100 Minus
CG13316-PA 1749 Mnt-RA 863..1749 903..17 4435 100 Minus
CG13316-PB 1788 Mnt-RB 1083..1788 722..17 3530 100 Minus
CG13316-PB 1788 Mnt-RB 905..1084 903..724 900 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
Mnt-RK 3734 CG13316-RK 1917..2803 903..17 4435 100 Minus
Mnt-RH 3064 CG13316-RH 2139..3025 903..17 4435 100 Minus
Mnt-RG 2578 CG13316-RG 1653..2539 903..17 4435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3699932..3700465 620..87 2670 100 Minus
X 23542271 X 3699339..3699486 871..724 740 100 Minus
X 23542271 X 3699682..3699787 725..620 530 100 Minus
X 23542271 X 3700670..3700741 88..17 360 100 Minus
Blast to na_te.dros performed 2015-02-06 15:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2617..2985 713..369 182 56.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6938 748..513 164 58.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6918 712..524 151 58.4 Minus
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 7208..7281 443..517 120 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6923 712..551 117 57.9 Minus
roo 9092 roo DM_ROO 9092bp 1120..1148 712..684 109 86.2 Minus

BS01223.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:57 Download gff for BS01223.3prime
Subject Subject Range Query Range Percent Splice Strand
Mnt-PA 863..1749 17..903 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:52 Download gff for BS01223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13316-PA 863..1749 17..903 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:18:34 Download gff for BS01223.3prime
Subject Subject Range Query Range Percent Splice Strand
Mnt-RG 1653..2539 17..903 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:04:48 Download gff for BS01223.3prime
Subject Subject Range Query Range Percent Splice Strand
Mnt-RG 1653..2539 17..903 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:04:48 Download gff for BS01223.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3700671..3700741 17..87 100   Minus
X 3699242..3699273 872..903 100 -> Minus
X 3699339..3699486 724..871 100 -> Minus
X 3699684..3699787 620..723 100 -> Minus
X 3699933..3700464 88..619 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:18:34 Download gff for BS01223.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3593275..3593306 872..903 100 -> Minus
arm_X 3593372..3593519 724..871 100 -> Minus
arm_X 3593717..3593820 620..723 100 -> Minus
arm_X 3593966..3594497 88..619 100 -> Minus
arm_X 3594704..3594774 17..87 100   Minus

BS01223.5prime Sequence

924 bp (793 high quality bases) assembled on 2005-11-29

> BS01223.5prime
GAAGTTATCAGTCGACATGTCAGGGATCGGGGGCATTGGGGTGCTCCTCG
AGGCGGCTCAATTTCTTGAGCAGCATGAGAAGCTCCCGCAGGCGGGAGGC
GGCGGCGGTAGCGCCCTGGGCGTGGGCGTGGCACTGCCTCAACAGCAGCA
GCAGACGGTGCACTGCAAGAGCAACTCCATTATCAACAACAACAATAGCA
GCCAGCACAATAGAAATAGCAGCAGTAGCAGTAACGGGATTATTGCAACG
CCACCGTTCACGAACGGAAATGGCAACGGTACCGTCGGCGTCGGTAACGC
GAGCGCCATTTTCAACGTTAGCGTCAATGCGAACGGGAACGGTCTGAGCA
ACGGTCACAGCAGTCCGCGCAGTCAATTAGCCGCCGCAGCCACTGCCCAC
GATTACGAGTATAGCGCCGCCGGAGTTGCCAATGGACACAGCGAAGGTCG
CCCCCACGTCTCGGCAGCCAGGGATCAGCAGGACCATCCGCAGCATCAGC
AACATGCCAACCATATGCAGATCCAGCAGCATTACGGCTATATGAGGAGT
AACATTGGCGGCGTGATCTATGGCTTGCACAAGGACTCTGCCGACTCTGC
GGCATCCTCGGCATGTGGAGCGGGAGCGGGAGCAGCAGCGGTGGGCATGA
GCATTGCCTCCTCGGCGCCAGCGGCGGGATCTCAGCTATCGGCGCATCAT
CACACGGGACACGGAGGCCGCAGGCGCACCACCAGTTCCAATAGTAATGG
AGCGGGCACCCGGGAGGTGCACAACAAGCTGGAAAAGGAGCGACGCGCCC
AGCTGAAAGAGTGCTATGACCTGCTCAAAAAGGTGCTGCCCATGGGTGAC
GAGGAACGAAAGAAAACATCAAACTTGACAATACTTGACACGGCCCCACA
ATATGTCAATTCCCTTGAGTCATG

BS01223.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13316-PC 1749 Mnt-RC 1..880 17..896 4350 99.7 Plus
CG13316-PA 1749 Mnt-RA 1..880 17..896 4350 99.7 Plus
CG13316-PB 1788 Mnt-RB 490..922 464..896 2115 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
Mnt-RE 3242 CG13316-RE 563..1469 17..924 4440 99.4 Plus
Mnt-RJ 3335 CG13316-RJ 653..1559 17..924 4440 99.4 Plus
Mnt-RA 2440 CG13316-RA 653..1559 17..924 4440 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3693485..3693932 17..464 2240 100 Plus
X 23542271 X 3698741..3699027 464..750 1435 100 Plus
X 23542271 X 3699113..3699273 750..910 730 96.9 Plus
Blast to na_te.dros performed 2015-02-12 05:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2472 134..235 179 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2650 166..504 164 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2415..2512 134..230 163 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6698..6912 298..531 150 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2769..2982 140..352 148 56 Plus
BS 5142 BS BS 5142bp 2012..2104 140..234 136 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2351..2442 472..562 115 59.8 Plus
rooA 7621 rooA ROOA_LTR 7621bp 3230..3283 875..821 110 69.1 Minus

BS01223.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:03:58 Download gff for BS01223.5prime
Subject Subject Range Query Range Percent Splice Strand
Mnt-PA 1..907 17..924 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:11:53 Download gff for BS01223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13316-PA 1..907 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:37:44 Download gff for BS01223.5prime
Subject Subject Range Query Range Percent Splice Strand
Mnt-RA 653..1559 17..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:52 Download gff for BS01223.5prime
Subject Subject Range Query Range Percent Splice Strand
Mnt-RA 653..1559 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:52 Download gff for BS01223.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3698742..3699027 465..750 100 -> Plus
X 3699114..3699273 751..910 97 -> Plus
X 3693485..3693932 17..464 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:37:44 Download gff for BS01223.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3587518..3587965 17..464 100 -> Plus
arm_X 3592775..3593060 465..750 100 -> Plus
arm_X 3593147..3593306 751..910 97 -> Plus

BS01223.complete Sequence

1781 bp (1781 high quality bases) assembled on 2006-03-24

> BS01223.complete
GAAGTTATCAGTCGACATGTCAGGGATCGGGGGCATTGGGGTGCTCCTCG
AGGCGGCTCAATTTCTTGAGCAGCATGAGAAGCTCCCGCAGGCGGGAGGC
GGCGGCGGTAGCGCCCTGGGCGTGGGCGTGGCACTGCCTCAACAGCAGCA
GCAGACGGTGCACTGCAAGAGCAACTCCATTATCAACAACAACAATAGCA
GCCAGCACAATAGAAATAGCAGCAGTAGCAGTAACGGGATTATTGCAACG
CCACCGTTCACGAACGGAAATGGCAACGGTACCGTCGGCGTCGGTAACGC
GAGCGCCATTTTCAACGTTAGCGTCAATGCGAACGGGAACGGTCTGAGCA
ACGGTCACAGCAGTCCGCGCAGTCAATTAGCCGCCGCAGCCACTGCCCAC
GATTACGAGTATAGCGCCGCCGGAGTTGCCAATGGACACAGCGAAGGTCG
CCCCCACGTCTCGGCAGCCAGGGATCAGCAGGACCATCCGCAGCATCAGC
AACATGCCAACCATATGCAGATCCAGCAGCATTACGGCTATATGAGGAGT
AACATTGGCGGCGTGATCTATGGCTTGCACAAGGACTCTGCCGACTCTGC
GGCATCCTCGGCATGTGGAGCGGGAGCGGGAGCAGCAGCGGTGGGCATGA
GCATTGCCTCCTCGGCGCCAGCGGCGGGATCTCAGCTATCGGCGCATCAT
CACACGGGACACGGAGGCCGCAGGCGCACCACCAGTTCCAATAGTAATGG
AGCGGGCACCCGGGAGGTGCACAACAAGCTGGAAAAGGAGCGACGCGCCC
AGCTGAAGGAGTGCTATGACCTGCTCAAAAAGGTGCTGCCCATGGGTGAC
GAGGACCGAAAGAAAACATCAAACTTGACAATACTTGACACGGCCCACAA
ATATGTCAATTCCTTGAGTCATGAAGTTTGCGAGCAGGAGGCGAAGATAG
AGAAACTGGCCAAGCAGAAGATCGAGCTGCAGAAGCGGCTAAAGCAACTG
AGCTTAAGGAGGGAATCGCCGCCCACCGATCAGCAAATCATTCCACAGGC
CGACAAAGCAGTTTGTCTGGCAACAACAGCCACAACAGCACCACCAACGG
CGGCCAGTGGCCACAATGGAACCACAATTCTATTCGATGCAGGCAACGCC
TGTGCCACTGGGCAGCTAACAACTGTGATAAACAAAACTAATGGAGGAGC
AACCGCAGCAGCCAGCAGCAAACACAATGGCAACCACACAGGAGGTGCAA
CAACCACACTGACTCCGGCCATGGGCATCATGACAATTAAAAATGGCAAT
GGCAGCAACGGCAACATGCTGGCAATCTCACCAACGGGAGGCCACAATCA
TCAGTTGCACCAGCACCACAACGGCAGCCCAGCGGGCAGTCCATCGGGAA
TAGGAGCCACAACTGGAGCCACCATCACACGTGGCTCGCCAACGCCATCG
ACTCCATCGCCGTCGCCCAGCTCCTCGTCCAGTGGCGTCTCGTTGTCGAC
CTCATTTATGGGCGGCTCCTCATCATCGTCCTCATCCTCCTCATCATCAT
CATCTTCCAGTTCGTCGTCCAGTTCTTCGTCGCCCACGCAACAACAGCAG
ATAATCACGCCCACGGCCACAGCCCGTAGTGTTGGCCTAAAATTCCATGG
CGGTGCGGGCGCTGCTGTGCCAGCTGGCGGAGGTTCAGTGAATGGGTTCC
ATCAGGCCGATAAGGATCGCAATTACACTTTCCTGAGGCTCAGTGCTGGG
ACAACGGCACAGTAAAAGCTTTCTAGACCAT

BS01223.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
Mnt-RE 1749 CG13316-PE 1..1749 17..1765 8745 100 Plus
Mnt-RA 1749 CG13316-PA 1..1749 17..1765 8745 100 Plus
Mnt-RC 1749 CG13316-PC 1..1749 17..1765 8745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
Mnt-RE 3242 CG13316-RE 563..2311 17..1765 8745 100 Plus
Mnt-RA 2440 CG13316-RA 653..2401 17..1765 8745 100 Plus
Mnt-RC 2581 CG13316-RC 794..2542 17..1765 8745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3699932..3700465 1162..1695 2670 100 Plus
X 23542271 X 3693485..3693932 17..464 2240 100 Plus
X 23542271 X 3698741..3699027 464..750 1435 100 Plus
X 23542271 X 3699113..3699273 750..910 805 100 Plus
X 23542271 X 3699339..3699486 911..1058 740 100 Plus
X 23542271 X 3699682..3699787 1057..1162 530 100 Plus
X 23542271 X 3700670..3700741 1694..1765 360 100 Plus
Blast to na_te.dros performed 2014-11-27 13:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2617..2985 1069..1413 182 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2472 134..235 179 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2650 166..504 164 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2415..2512 134..230 163 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6698..6912 298..531 150 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2769..2982 140..352 148 56 Plus
BS 5142 BS BS 5142bp 2012..2104 140..234 136 63.2 Plus
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 7208..7281 1339..1265 120 64 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2351..2442 472..562 115 59.8 Plus

BS01223.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:35 Download gff for BS01223.complete
Subject Subject Range Query Range Percent Splice Strand
Mnt-RA 1..1749 17..1765 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:48 Download gff for BS01223.complete
Subject Subject Range Query Range Percent Splice Strand
Mnt-RA 651..2399 17..1765 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:35:19 Download gff for BS01223.complete
Subject Subject Range Query Range Percent Splice Strand
Mnt-RC 794..2540 17..1763 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:36 Download gff for BS01223.complete
Subject Subject Range Query Range Percent Splice Strand
Mnt-RA 651..2399 17..1765 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:53 Download gff for BS01223.complete
Subject Subject Range Query Range Percent Splice Strand
Mnt-RC 794..2540 17..1763 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:53 Download gff for BS01223.complete
Subject Subject Range Query Range Percent Splice Strand
X 3699339..3699486 911..1058 100 -> Plus
X 3699684..3699787 1059..1162 100 -> Plus
X 3698742..3699027 465..750 100 -> Plus
X 3693485..3693932 17..464 100 -> Plus
X 3699114..3699273 751..910 100 -> Plus
X 3699933..3700464 1163..1694 100 -> Plus
X 3700671..3700739 1695..1763 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:35:19 Download gff for BS01223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3587518..3587965 17..464 100 -> Plus
arm_X 3592775..3593060 465..750 100 -> Plus
arm_X 3593147..3593306 751..910 100 -> Plus
arm_X 3593372..3593519 911..1058 100 -> Plus
arm_X 3593717..3593820 1059..1162 100 -> Plus
arm_X 3593966..3594497 1163..1694 100 -> Plus
arm_X 3594704..3594772 1695..1763 100   Plus

BS01223.pep Sequence

Translation from 16 to 1764

> BS01223.pep
MSGIGGIGVLLEAAQFLEQHEKLPQAGGGGGSALGVGVALPQQQQQTVHC
KSNSIINNNNSSQHNRNSSSSSNGIIATPPFTNGNGNGTVGVGNASAIFN
VSVNANGNGLSNGHSSPRSQLAAAATAHDYEYSAAGVANGHSEGRPHVSA
ARDQQDHPQHQQHANHMQIQQHYGYMRSNIGGVIYGLHKDSADSAASSAC
GAGAGAAAVGMSIASSAPAAGSQLSAHHHTGHGGRRRTTSSNSNGAGTRE
VHNKLEKERRAQLKECYDLLKKVLPMGDEDRKKTSNLTILDTAHKYVNSL
SHEVCEQEAKIEKLAKQKIELQKRLKQLSLRRESPPTDQQIIPQADKAVC
LATTATTAPPTAASGHNGTTILFDAGNACATGQLTTVINKTNGGATAAAS
SKHNGNHTGGATTTLTPAMGIMTIKNGNGSNGNMLAISPTGGHNHQLHQH
HNGSPAGSPSGIGATTGATITRGSPTPSTPSPSPSSSSSGVSLSTSFMGG
SSSSSSSSSSSSSSSSSSSSSSPTQQQQIITPTATARSVGLKFHGGAGAA
VPAGGGSVNGFHQADKDRNYTFLRLSAGTTAQ*

BS01223.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Mnt-PE 582 CG13316-PE 1..582 1..582 2993 100 Plus
Mnt-PA 582 CG13316-PA 1..582 1..582 2993 100 Plus
Mnt-PC 582 CG13316-PC 1..582 1..582 2993 100 Plus
Mnt-PJ 583 CG13316-PJ 1..583 1..582 2981 99.8 Plus
Mnt-PG 581 CG13316-PG 1..581 1..582 2977 99.8 Plus