Clone Sequence Records
BS01231.3prime Sequence
906 bp (769 high quality bases) assembled on 2005-11-29
> BS01231.3prime
ATGGTCTAGAAAGCTTTCACAGCACCATCACCACTTTGGAGGTGGACACC
GGCTGCTCATGAACTTCGGTTATGTGAAGGTTGGTTGCCGATCCACCGGT
CGCACCTCCACCGGTCGGACTTCCACCTGTCGCACCTCCGCCTGTCGCAC
CTTCTGCGCCCGCTTGTCGGCTGGGAGGATTGATGGACTGAACAGCAACG
GTGGCCGTCACCGGCGACTCCTTGTTGTGGACGCGCATATGACTGGCCAG
TCGCTTCTTTGTGGGAAAGGCCTTAACGCAGACCTCGCACTTAAACGGCT
TTTCGCCGGAATGGAGGCGAACATGGGCATTGAGGTTGCTGGTAAAGGTG
AAGGCATGCCCGCAAACATCACACTTGTGCGCCTTGACGCCACTGTGGAC
CATCATGTGCTTCTTGTAGCCCGACTTCTGAGACAGTCCCACGCCGCAGA
TCTCGCAGGTGAAAGCCTTCTTGCCGGTGTGGCTTATCTTGTGCTGGCGC
AGCGAGGACGAATCGTAGTAGGCCTTGTCGCACAGATCGCAGGCGTATGG
TCGCTCGCCCGTGTGCGTGAGCTTGTGGCGCCGCAGATGATCGAACGCCG
CATATCCGCGGCCGCACTGATCGCAGTTGTAGGGTTTCTTCTCCGCATGA
GTTCTCTTGTGCACTGCCAGACTGGAGGTGGTACGATAGAAGCGGCCGCA
TATGCTGCACTGGTGCGGCTTGACATTTGTGTGTGTCAGCATGTGTTCCT
TGTAGTTGCGTAGGTGCTTCAGACGCTTGCCACACTCCTCGCACTCGTAT
TGCTTCTCGTCCACGTGGGAGCGCATGTGCTGGTTGAGACGGCACTGCTG
GCGGAACGCCTTCTGGCACACGGTGCACACGTACGGCAGCGCCTCGCCAG
CGGTCG
BS01231.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2711-PA | 1779 | dwg-RA | 890..1779 | 906..17 | 4450 | 100 | Minus |
| CG2712-PA | 1506 | CG2712-RA | 1135..1161 | 430..404 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dwg-RA | 2002 | CG2711-RA | 1024..1913 | 906..17 | 4450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2729064..2729953 | 906..17 | 4450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:27:04 has no hits.
BS01231.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:11 Download gff for
BS01231.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2711-PA | 890..1779 | 17..906 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:11 Download gff for
BS01231.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2711-PA | 890..1779 | 17..906 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:42:07 Download gff for
BS01231.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 1024..1915 | 13..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:46:14 Download gff for
BS01231.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 1024..1915 | 13..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:46:14 Download gff for
BS01231.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2729064..2729955 | 13..906 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:42:07 Download gff for
BS01231.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2623097..2623988 | 13..906 | 99 | | Minus |
BS01231.5prime Sequence
898 bp (686 high quality bases) assembled on 2005-11-29
> BS01231.5prime
GAAGTTATCAGTCGACATGATGAATAGCAAGATCGCCGAGGTAGTGGTGC
TCAACTGCCGGACGTGCACGCGTGCCTGCAAGCTGCACAAGCCGCTGCAG
GAGGAGATCGATCTGGGTTCGGAGGGCAGCACCACGCTGGCCAGCATGCT
AAACTACTGCACGGGACTCTCGTTCGAGCCGCAAGACGGCGCCGCCATGC
CGCAGCACATCTGCCTCCACTGCCTGCAGCTGCTGGAACAGGCGTTCAAC
TTCAAGCGCATGGTCATCGATTCGGACGAGCTGCTCCGCCTGGGCCTGGA
CGAGGCGCGCTGCTCCAGCTTTCACGAGAGTCAGACTCATAGCCCCAACC
AGAGCCAGCAGCACGACCAGCAACAGCAGGCGTTCGACTCCACCGAGGAG
TACGTCATGATCGAGATGCTCAACGAGGAGCAGGAGAACGTCGCCAATTT
GGATGAAGAACTAGCAGAGGAGGATCGTCGCATCTTCGCGATGACCGTGG
ATGAGGAGGAGGAGTTTCTCACCGAGGAGGTGGATCAGGATGACGAGCTG
TCGGAGGAGGAGCACCAGCTGGCACAGTCGGGCGACCAGCAGGAGGAACA
CATCACTATGGAGAGCGTGCATGAGTTTCAGCCCGCCGAAGTGGAGTATG
TGACCATTAAGAATGAGTTCGAAACGATCGTCACGGAGGAGGATGAGTTC
GAGGTGATGAACGACTCCGGCGCCCACGACGCCATACTGGACTGTCAGAT
GATTGTGATACCCGCCGAGGGAGCCATTGACGAGGTCATCGGCGAGGAGA
CCCTCGAATTGGAGGGGGATGGGCGCGAGGAGCATCTGCTGCCGGAGGCG
GAGGATGTCTGCGAGGATGAGGACTTCCTGGAGGAGTCGCTGGACTCA
BS01231.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2711-PA | 1779 | dwg-RA | 1..882 | 17..898 | 4385 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dwg-RA | 2002 | CG2711-RA | 134..1016 | 16..898 | 4400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2727831..2728263 | 16..448 | 2165 | 100 | Plus |
| X | 23542271 | X | 2728545..2728934 | 449..838 | 1950 | 100 | Plus |
| X | 23542271 | X | 2728996..2729056 | 838..898 | 290 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:44:37 has no hits.
BS01231.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:12 Download gff for
BS01231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2711-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:13 Download gff for
BS01231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2711-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:52:43 Download gff for
BS01231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 134..1015 | 16..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:13:43 Download gff for
BS01231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 134..1015 | 16..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:13:43 Download gff for
BS01231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2727831..2728263 | 16..448 | 100 | -> | Plus |
| X | 2728545..2728934 | 449..838 | 100 | -> | Plus |
| X | 2728997..2729055 | 839..897 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:52:43 Download gff for
BS01231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2621864..2622296 | 16..448 | 100 | -> | Plus |
| arm_X | 2622578..2622967 | 449..838 | 100 | -> | Plus |
| arm_X | 2623030..2623088 | 839..897 | 98 | | Plus |
BS01231.complete Sequence
1811 bp (1811 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634568
> BS01231.complete
GAAGTTATCAGTCGACATGATGAATAGCAAGATCGCCGAGGTAGTGGTGC
TCAACTGCCGGACGTGCACGCGTGCCTGCAAGCTGCACAAGCCGCTGCAG
GAGGAGATCGATCTGGGTTCGGAGGGCAGCACCACGCTGGCCAGCATGCT
AAACTACTGCACGGGACTCTCGTTCGAGCCGCAAGACGGCGCCGCCATGC
CGCAGCACATCTGCCTCCACTGCCTGCAGCTGCTGGAACAGGCGTTCAAC
TTCAAGCGCATGGTCATCGATTCGGACGAGCTGCTCCGCCTGGGCCTGGA
CGAGGCGCGCTGCTCCAGCTTTCACGAGAGTCAGACTCATAGCCCCAACC
AGAGCCAGCAGCACGACCAGCAACAGCAGGCGTTCGACTCCACCGAGGAG
TACGTCATGATCGAGATGCTCAACGAGGAGCAGGAGAACGTCGCCAATTT
GGATGAAGAACTAGCAGAGGAGGATCGTCGCATCTTCGCGATGACCGTGG
ATGAGGAGGAGGAGTTTCTCACCGAGGAGGTGGATCAGGATGACGAGCTG
TCGGAGGAGGAGCACCAGCTGGCACAGTCGGGCGACCAGCAGGAGGAACA
CATCACTATGGAGAGCGTGCATGAGTTTCAGCCCGCCGAAGTGGAGTATG
TGACCATTAAGAATGAGTTCGAAACGATCGTCACGGAGGAGGATGAGTTC
GAGGTGATGAACGACTCCGGCGCCCACGACGCCATACTGGACTGTCAGAT
GATTGTGATACCCGCCGAGGGAGCCATTGACGAGGTCATCGGCGAGGAGA
CCCTCGAATTGGAGGGGGATGGGCGCGAGGAGCATCTGCTGCCGGAGGCG
GAGGATGTCTGCGAAGATGAGGACTTCCTGGAGGAGTCGCTGGACTCAGC
GCCGCCGACCGCTGGCGAGGCGCTGCCGTACGTGTGCACCGTGTGCCAGA
AGGCGTTCCGCCAGCAGTGCCGTCTCAACCAGCACATGCGCTCCCACGTG
GACGAGAAGCAATACGAGTGCGAGGAGTGTGGCAAGCGTCTGAAGCACCT
ACGCAACTACAAGGAACACATGCTGACACACACAAATGTCAAGCCGCACC
AGTGCAGCATATGCGGCCGCTTCTATCGTACCACCTCCAGTCTGGCAGTG
CACAAGAGAACTCATGCGGAGAAGAAACCCTACAACTGCGATCAGTGCGG
CCGCGGATATGCGGCGTTCGATCATCTGCGGCGCCACAAGCTCACGCACA
CGGGCGAGCGACCATACGCCTGCGATCTGTGCGACAAGGCCTACTACGAT
TCGTCCTCGCTGCGCCAGCACAAGATAAGCCACACCGGCAAGAAGGCTTT
CACCTGCGAGATCTGCGGCGTGGGACTGTCTCAGAAGTCGGGCTACAAGA
AGCACATGATGGTCCACAGTGGCGTCAAGGCGCACAAGTGTGATGTTTGC
GGGCATGCCTTCACCTTTACCAGCAACCTCAATGCCCATGTTCGCCTCCA
TTCCGGCGAAAAGCCGTTTAAGTGCGAGGTCTGCGTTAAGGCCTTTCCCA
CAAAGAAGCGACTGGCCAGTCATATGCGCGTCCACAACAAGGAGTCGCCG
GTGACGGCCACCGTTGCTGTTCAGTCCATCAATCCTCCCAGCCGACAAGC
GGGCGCAGAAGGTGCGACAGGCGGAGGTGCGACAGGTGGAAGTCCGACCG
GTGGAGGTGCGACCGGTGGATCGGCAACCAACCTTCACATAACCGAAGTT
CATGAGCAGCCGGTGTCCACCTCCAAAGTGGTGATGGTGCTGTGAAAGCT
TTCTAGACCAT
BS01231.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dwg-RA | 1779 | CG2711-PA | 1..1779 | 17..1795 | 8895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dwg-RA | 2002 | CG2711-RA | 134..1913 | 16..1795 | 8900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2728996..2729953 | 838..1795 | 4790 | 100 | Plus |
| X | 23542271 | X | 2727831..2728263 | 16..448 | 2165 | 100 | Plus |
| X | 23542271 | X | 2728545..2728934 | 449..838 | 1950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:56:06 has no hits.
BS01231.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:33 Download gff for
BS01231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 1..1779 | 17..1795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:45 Download gff for
BS01231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 132..1913 | 16..1799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:38 Download gff for
BS01231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 135..1912 | 17..1794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:33 Download gff for
BS01231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 132..1913 | 16..1799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:44 Download gff for
BS01231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 135..1912 | 17..1794 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:44 Download gff for
BS01231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2727832..2728263 | 17..448 | 100 | -> | Plus |
| X | 2728545..2728934 | 449..838 | 100 | -> | Plus |
| X | 2728997..2729952 | 839..1794 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:38 Download gff for
BS01231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2621865..2622296 | 17..448 | 100 | -> | Plus |
| arm_X | 2622578..2622967 | 449..838 | 100 | -> | Plus |
| arm_X | 2623030..2623985 | 839..1794 | 100 | | Plus |
BS01231.pep Sequence
Translation from 16 to 1794
> BS01231.pep
MMNSKIAEVVVLNCRTCTRACKLHKPLQEEIDLGSEGSTTLASMLNYCTG
LSFEPQDGAAMPQHICLHCLQLLEQAFNFKRMVIDSDELLRLGLDEARCS
SFHESQTHSPNQSQQHDQQQQAFDSTEEYVMIEMLNEEQENVANLDEELA
EEDRRIFAMTVDEEEEFLTEEVDQDDELSEEEHQLAQSGDQQEEHITMES
VHEFQPAEVEYVTIKNEFETIVTEEDEFEVMNDSGAHDAILDCQMIVIPA
EGAIDEVIGEETLELEGDGREEHLLPEAEDVCEDEDFLEESLDSAPPTAG
EALPYVCTVCQKAFRQQCRLNQHMRSHVDEKQYECEECGKRLKHLRNYKE
HMLTHTNVKPHQCSICGRFYRTTSSLAVHKRTHAEKKPYNCDQCGRGYAA
FDHLRRHKLTHTGERPYACDLCDKAYYDSSSLRQHKISHTGKKAFTCEIC
GVGLSQKSGYKKHMMVHSGVKAHKCDVCGHAFTFTSNLNAHVRLHSGEKP
FKCEVCVKAFPTKKRLASHMRVHNKESPVTATVAVQSINPPSRQAGAEGA
TGGGATGGSPTGGGATGGSATNLHITEVHEQPVSTSKVVMVL*
BS01231.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dwg-PA | 592 | CG2711-PA | 1..592 | 1..592 | 3156 | 100 | Plus |
| Meics-PB | 571 | CG8474-PB | 63..516 | 61..530 | 492 | 25.7 | Plus |
| Meics-PA | 583 | CG8474-PA | 63..528 | 61..530 | 488 | 26.3 | Plus |
| crol-PB | 891 | CG14938-PB | 304..556 | 276..528 | 477 | 34 | Plus |
| crol-PI | 962 | CG14938-PI | 304..556 | 276..528 | 477 | 34 | Plus |
| crol-PB | 891 | CG14938-PB | 304..537 | 304..537 | 475 | 33.8 | Plus |
| crol-PB | 891 | CG14938-PB | 277..509 | 305..537 | 465 | 33.5 | Plus |
| crol-PB | 891 | CG14938-PB | 388..612 | 304..528 | 465 | 35.6 | Plus |
| crol-PB | 891 | CG14938-PB | 212..444 | 293..528 | 422 | 32.6 | Plus |
| crol-PB | 891 | CG14938-PB | 444..712 | 304..565 | 399 | 30.5 | Plus |
| Meics-PB | 571 | CG8474-PB | 368..571 | 301..499 | 367 | 35.1 | Plus |
| Meics-PA | 583 | CG8474-PA | 380..583 | 301..499 | 367 | 35.1 | Plus |
| crol-PB | 891 | CG14938-PB | 223..427 | 335..539 | 358 | 31.2 | Plus |
