Clone Sequence Records
BS01233.3prime Sequence
905 bp (821 high quality bases) assembled on 2005-11-29
> BS01233.3prime
ATGGTCTAGAAAGCTTTTAAGGCTGAGGGAATGTCTTTGTAAAGAGTGCG
TCGCTTGACGACAGAGAGCTCTTGAGGATCTTGTGGGTGCGTCGCATGTG
GACGCCCAGACTAACTCGCTCCGAGAAGCGCGTCGTGCAGAGCGAACATT
GCAGGGTCTTCTCCTTGTGGATGTGGCGATGCTTGACTAAGGCGTTGGCA
TTGGTGAAGGCCTTCTGACAGACCTCGCAGACCTTGTCGCGGATGTTCAG
GTGCGCCTTTACGTGGTCCTTGAGGTCGCGCTTGGTCAGGAAGTCCTTGG
GGCACATGTCGCACTTGAAGGCTCGGATCTTGGTGTGAACCGCAGTTACG
TGCGTTGTCATTTGGATTTTTTGCTTAAAACACTTGCCGCAGAACTCGCA
GACAAATGGCTTGGCGACGTGCTTCTCGTCATGGGTGCGTTTGTGGATAG
CCAGTTGATTTCCAAAGGCAAAGCTCCTGCTGCAGATCTCGCAGACAAAG
CTCTTGTCCATGTGCACACGCTGGCTGTGCTGCTGCAGGTGACACTTTCG
GTCGAAGTTCAGCTCGCAAAGCGTGCAGCGAAACCAGCCTCCATCGCCCA
TCTTATGATCCCGGAACTGATGTGCTTGCAGGGCGTGATCTGTGCTAAAG
GAGTGCTCGCAGACTTCACATTTAAGCTTCTGTCGGAATGATTTAGTGGG
CATAAAGCTATTGCAGCGCTCGATGTACTGCTTCTCGGCCAGCGAGAGAC
CCACACATTGGACGTCTGTGAGGGTTTTGATCCGTCGCGAATACCATTGG
CGCATGCTCTGAATACTGTCGTAGACATCGTAGTGGGTGACCAGGCCCAA
CGAAAACTCCGAAGTCAGCAGGTCAGTGATCTCTATGAGCGATGACTTTC
GTACG
BS01233.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1605-PA | 1782 | az2-RA | 894..1780 | 905..19 | 4410 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| az2-RA | 2006 | CG1605-RA | 948..1834 | 905..19 | 4420 | 99.9 | Minus |
| CG1602-RA | 1901 | CG1602-RA | 1468..1606 | 365..227 | 185 | 75.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7510794..7511680 | 19..905 | 4420 | 99.9 | Plus |
| 2R | 25286936 | 2R | 7517218..7517356 | 227..365 | 185 | 75.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:49:02 has no hits.
BS01233.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:15 Download gff for
BS01233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-PA | 894..1782 | 17..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:17 Download gff for
BS01233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1605-PA | 894..1782 | 17..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:13:38 Download gff for
BS01233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 948..1844 | 9..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:53 Download gff for
BS01233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 948..1844 | 9..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:53 Download gff for
BS01233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7510784..7511680 | 9..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:13:38 Download gff for
BS01233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3398289..3399185 | 9..905 | 99 | | Plus |
BS01233.5prime Sequence
792 bp (790 high quality bases) assembled on 2005-11-29
> BS01233.5prime
GAAGTTATCAGTCGACATGGAGTTCAAGCGGTGGCGAGAGTTCATCGTGC
ACGTCAAGGAGCACCTGGAAGCAAATCCAAGCATGCAGCAAGAGCTCACT
ACTTCCGAAGTCATTTCGTCAGCCAAATGCGAGGAGGAGGTCTCGCCAGC
CAAGGTGTTCATAGTGGAGGAGCCTCCGGAAAATTGCCTGGCTGAAGACA
TGTTCGTTGACGTGCCACCTTCATCAGAGAACGACGAGAGCACCAGCCCG
GTGGAGGAGGAGGAGGAAGAAGACGACGAGGTGGACTCCTCCTCGATGAC
AGTTGACTGCGAATTGGGCACCAGAAACTCCACACACTTTGCTCCTTTAA
CCAAATTCAATCCTACGTTTTACCGACGCAGTCCTCGGATCACACAGTTC
ATTGAACTGTATAAGCAGCAGACATGCCTCTGGGATCCAGCGGATGAGTC
GTACAGGGACAAGGAGAAACGCGCAAATGCCTATGAGGAGTTGCTGGAGC
AATTAAAGGCGACCGTCAATCTTCACCTAACGGCCTATAAGCTGAAGAAG
TGCATCACCAGCCTACACGCGCAGTATGCGTCGATCTCGCGGCAGAAGAA
AACTCAGAAACTAACCAAGGTTCCACTGTACTACCATGGAAAGTACAGCT
TTCTGGCAGAGCGCGGTAGTCTGGAGGATGCGGACAGCGATGATGTCGAC
GGCGATGGCAAAATAAAGCTGGTGTTCACAGAGGAGAATCAACTGACCAC
ACAGTTCATTGATTTGTACTCCAAGTTTCCCCAACTGTACGA
BS01233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1605-PA | 1782 | az2-RA | 88..863 | 17..792 | 3880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| az2-RA | 2006 | CG1605-RA | 142..917 | 17..792 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7511841..7512203 | 718..356 | 1815 | 100 | Minus |
| 2R | 25286936 | 2R | 7512270..7512608 | 355..17 | 1695 | 100 | Minus |
| 2R | 25286936 | 2R | 7511711..7511786 | 792..717 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:13:13 has no hits.
BS01233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:16 Download gff for
BS01233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-PA | 79..862 | 6..791 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:18 Download gff for
BS01233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1605-PA | 79..862 | 6..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:17:44 Download gff for
BS01233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 133..916 | 6..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:26:54 Download gff for
BS01233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 133..916 | 6..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:26:54 Download gff for
BS01233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7512270..7512617 | 6..355 | 98 | | Minus |
| 2R | 7511712..7511784 | 719..791 | 100 | <- | Minus |
| 2R | 7511841..7512203 | 356..718 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:17:44 Download gff for
BS01233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3399217..3399289 | 719..791 | 100 | <- | Minus |
| arm_2R | 3399346..3399708 | 356..718 | 100 | <- | Minus |
| arm_2R | 3399775..3400122 | 6..355 | 98 | | Minus |
BS01233.complete Sequence
1727 bp assembled on 2008-08-15
> BS01233.complete
GAAGTTATCAGTCGACATGGAGTTCAAGCGGTGGCGAGAGTTCATCGTGC
ACGTCAAGGAGCACCTGGAAGCAAATCCAAGCATGCAGCAAGAGCTCACT
ACTTCCGAAGTCATTTCGTCAGCCAAATGCGAGGAGGAGGTCTCGCCAGC
CAAGGTGTTCATAGTGGAGGAGCCTCCGGAAAATTGCCTGGCTGAAGACA
TGTTCGTTGACGTGCCACCTTCATCAGAGAACGACGAGAGCACCAGCCCG
GTGGAGGAGGAGGAGGAAGAAGACGACGAGGTGGACTCCTCCTCGATGAC
AGTTGACTGCGAATTGGGCACCAGAAACTCCACACACTTTGCTCCTTTAA
CCAAATTCAATCCTACGTTTTACCGACGCAGTCCTCGGATCACACAGTTC
ATTGAACTGTATAAGCAGCAGACATGCCTCTGGGATCCAGCGGATGAGTC
GTACAGGGACAAGGAGAAACGCGCAAATGCCTATGAGGAGTTGCTGGAGC
AATTAAAGGCGACCGTCAATCTTCACCTAACGGCCTATAAGCTGAAGAAG
TGCATCACCAGCCTACACGCGCAGTATGCGTCGATCTCGCGGCAGAAGAA
AACTCAGAAACTAACCAAGGTTCCACTGTACTACCATGGAAAGTACAGCT
TTCTGGCAGAGCGCGGTAGTCTGGAGGATGCGGACAGCGATGATGTCGAC
GGCGATGGCAAAATAAAGCTGGTGTTCACAGAGGAGAATCAACTGACCAC
ACAGTTCATTGATTTGTACTCCAAGTTTCCCCAACTGTACGATCCCGCGC
ACAAGCACTTCTGCAATCTAAACGTACGAAAGTCATCGCTCATAGAGATC
ACTGACCTGCTGACTTCGGAGTTTTCGTTGGGCCTGGTCACCCACTACGA
TGTCTACGACAGTATTCAGAGCATGCGCCAATGGTATTCGCGACGGATCA
AAACCCTCACAGACGTCCAATGTGTGGGTCTCTCGCTGGCCGAGAAGCAG
TACATCGAGCGCTGCAATAGCTTTATGCCCACTAAATCATTCCGACAGAA
GCTTAAATGTGAAGTCTGCGAGCACTCCTTTAGCACAGATCACGCCCTGC
AAGCACATCAGTTCCGGGATCATAAGATGGGCGATGGAGGCTGGTTTCGC
TGCACGCTTTGCGAGCTGAACTTCGACCGAAAGTGTCACCTGCAGCAGCA
CAGCCAGCGTGTGCACATGGACAAGAGCTTTGTCTGCGAGATCTGCAGCA
GGAGCTTTGCCTTTGGAAATCAACTGGCTATCCACAAACGCACCCATGAC
GAGAAGCACGTCGCCAAGCCATTTGTCTGCGAGTTCTGCGGCAAGTGTTT
TAAGCAAAAAATCCAAATGACAACGCACGTAACTGCGGTTCACACCAAGA
TCCGAGCCTTCAAGTGCGACATGTGCCCCAAGGACTTCCTGACCAAGCGC
GACCTCAAGGACCACGTAAAGGCGCACCTGAACATCCGCGACAAGGTCTG
CGAGGTCTGTCAGAAGGCCTTCACCAATGCCAACGCCTTAGTCAAGCATC
GCCACATCCACAAGGAGAAGACCCTGCAATGTTCGCTCTGCACGACGCGC
TTCTCGGAGCGAGTTAGTCTGGGCGTCCACATGCGACGCACCCACAAGAT
CCTCAAGAGCTCTCTGTCGTCAAGCGACGCACTCTTTACAAAGACATTCC
CTCAGCCTTAAAAGCTTTCTAGACCAT
BS01233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| az2-RA | 1782 | CG1605-PA | 88..1780 | 17..1709 | 8450 | 99.9 | Plus |
| CG1602-RA | 1734 | CG1602-PA | 1392..1530 | 1363..1501 | 185 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| az2-RA | 2006 | CG1605-RA | 142..1834 | 17..1709 | 8450 | 99.9 | Plus |
| CG1602-RA | 1901 | CG1602-RA | 1468..1606 | 1363..1501 | 185 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7510794..7511786 | 1709..717 | 4950 | 99.9 | Minus |
| 2R | 25286936 | 2R | 7511841..7512203 | 718..356 | 1815 | 100 | Minus |
| 2R | 25286936 | 2R | 7512270..7512608 | 355..17 | 1695 | 100 | Minus |
| 2R | 25286936 | 2R | 7517218..7517356 | 1501..1363 | 185 | 75.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:14:36 has no hits.
BS01233.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:34 Download gff for
BS01233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 108..1819 | 6..1719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:35 Download gff for
BS01233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 142..1834 | 17..1709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:25 Download gff for
BS01233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 117..1809 | 17..1709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:39 Download gff for
BS01233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 142..1834 | 17..1709 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:39 Download gff for
BS01233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7510794..7511784 | 719..1709 | 99 | <- | Minus |
| 2R | 7511841..7512203 | 356..718 | 100 | <- | Minus |
| 2R | 7512270..7512608 | 17..355 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:35 Download gff for
BS01233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3398299..3399289 | 719..1709 | 99 | <- | Minus |
| arm_2R | 3399346..3399708 | 356..718 | 100 | <- | Minus |
| arm_2R | 3399775..3400113 | 17..355 | 100 | | Minus |
BS01233.pep Sequence
Translation from 16 to 1710
> BS01233.pep
MEFKRWREFIVHVKEHLEANPSMQQELTTSEVISSAKCEEEVSPAKVFIV
EEPPENCLAEDMFVDVPPSSENDESTSPVEEEEEEDDEVDSSSMTVDCEL
GTRNSTHFAPLTKFNPTFYRRSPRITQFIELYKQQTCLWDPADESYRDKE
KRANAYEELLEQLKATVNLHLTAYKLKKCITSLHAQYASISRQKKTQKLT
KVPLYYHGKYSFLAERGSLEDADSDDVDGDGKIKLVFTEENQLTTQFIDL
YSKFPQLYDPAHKHFCNLNVRKSSLIEITDLLTSEFSLGLVTHYDVYDSI
QSMRQWYSRRIKTLTDVQCVGLSLAEKQYIERCNSFMPTKSFRQKLKCEV
CEHSFSTDHALQAHQFRDHKMGDGGWFRCTLCELNFDRKCHLQQHSQRVH
MDKSFVCEICSRSFAFGNQLAIHKRTHDEKHVAKPFVCEFCGKCFKQKIQ
MTTHVTAVHTKIRAFKCDMCPKDFLTKRDLKDHVKAHLNIRDKVCEVCQK
AFTNANALVKHRHIHKEKTLQCSLCTTRFSERVSLGVHMRRTHKILKSSL
SSSDALFTKTFPQP*
BS01233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| az2-PA | 593 | CG1605-PA | 30..593 | 1..564 | 3012 | 100 | Plus |
| CG1602-PA | 577 | CG1602-PA | 27..565 | 1..549 | 999 | 39.1 | Plus |
| CG1603-PB | 586 | CG1603-PB | 136..586 | 70..518 | 683 | 33 | Plus |
| CG1603-PA | 586 | CG1603-PA | 136..586 | 70..518 | 683 | 33 | Plus |
| rgr-PA | 856 | CG8643-PA | 434..847 | 129..543 | 360 | 25.3 | Plus |
