Clone Sequence Records
BS01238.3prime Sequence
932 bp (854 high quality bases) assembled on 2005-11-29
> BS01238.3prime
ATGGTCTAGAAAGCTTCTACAGTCCACTGGTGTTGCTGGTCATCAGTATG
AACGGAATAAGAGCATCCATCTGCATCTGCCCCACCAAGTTGGCGAAGAA
CAGCTCCTCCATGGCCTCTGCGTCCAGGCTGCTGAGCGGAAGAAGGCGAG
CCACCAGAACATTAAAGCGCTCCTCGCCGCCGCCGATGCCACCCTGCCTT
CTCAAACTTGACAGAGCGTAGAGTTGGACTCTGCGGACGTAGCCTCGCAA
CGACCGCTCCTTGCGCTGCTGCAAGAGCGTTGGATTGAAGAGCAAGATCA
GACGCAGCAAGCCAAACTCCATATCAGTAACATCCAGTGACTGGAGCTCC
TGGACAAAGTCGTGCAGGGTCCTGGTGAGATTTGCCATCTTCGAGATCTT
CAACGGTTCGATCTTATCGATATCCGCTAGCTGGCGAGTGCTTTGAATAA
ACTGCCCGATAATGGTGGGCACCGAAAGCTGACCCTGACACTGCGCCAAA
GCTATAGCCATTAATGCTGGCCACACTCCTCTCAGGAGTTTCACCTGTGT
ATGGGCTTCCAATTGTTCGAAAACTGGAACCTTTCGAAGGGTATGGATGG
TGAGAAAAATGATTCGCGAGCCCGTCTCACACACATAATGAATATTTAAA
TACGAGTGGACCAAAGTCGGCGGTTGCACATGAAAGGCACACTGCACATC
GGTGAGAAGATCCTGTTCAAAGACCGCCTCATTGATAGCAAAATCGCTTC
CACCGCTTCGGTTCCCACCGCACTCAAAGTCTAGTTCCATGTGCTCCAGC
TCCGCGTCTACGGCATCCTCGGTGCCACTGTCCTCCGCCTCTGAATCGCA
CTCGGGGCTCACACTCAGATTACCATTTCGCTCCAGTTGGGTTTTGGATG
GGCTGCAGGATCTGCAGTCCCTTTGTGAATGA
BS01238.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7199-PC | 1806 | Hr78-RC | 933..1806 | 890..17 | 4320 | 99.7 | Minus |
| CG7199-PA | 1800 | Hr78-RA | 927..1800 | 890..17 | 4320 | 99.7 | Minus |
| CG7199-PD | 1806 | Hr78-RD | 933..1806 | 890..17 | 4320 | 99.7 | Minus |
| CG7199-PB | 1806 | Hr78-RB | 933..1806 | 890..17 | 4320 | 99.7 | Minus |
| CG7199-PC | 1806 | Hr78-RC | 901..934 | 923..890 | 170 | 100 | Minus |
| CG7199-PA | 1800 | Hr78-RA | 895..928 | 923..890 | 170 | 100 | Minus |
| CG7199-PD | 1806 | Hr78-RD | 901..934 | 923..890 | 170 | 100 | Minus |
| CG7199-PB | 1806 | Hr78-RB | 901..934 | 923..890 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr78-RF | 2175 | CG7199-RF | 975..1888 | 932..17 | 4485 | 99.5 | Minus |
| Hr78-RE | 2182 | CG7199-RE | 982..1895 | 932..17 | 4485 | 99.5 | Minus |
| Hr78-RB | 2266 | CG7199-RB | 1115..2028 | 932..17 | 4485 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21494306..21495211 | 17..923 | 4455 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:32:43 has no hits.
BS01238.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:26 Download gff for
BS01238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-PC | 894..1806 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:31 Download gff for
BS01238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7199-PD | 894..1806 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:15:17 Download gff for
BS01238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RB | 1116..2030 | 13..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:49:44 Download gff for
BS01238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RB | 1116..2030 | 13..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:49:44 Download gff for
BS01238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21494304..21495218 | 13..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:15:17 Download gff for
BS01238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21487404..21488318 | 13..931 | 99 | | Plus |
BS01238.5prime Sequence
865 bp (783 high quality bases) assembled on 2005-11-29
> BS01238.5prime
GAAGTTATCAGTCGACATGGACGGCGTTAAGGTTGAGACGTTCATCAAAA
GCGAAGAAAACCGAGCGATGCCCTTGATCGGAGGAGGCAGTGCCTCAGGC
GGCACTCCTCTGCCAGGAGGCGGCGTGGGAATGGGAGCCGGAGCATCCGC
AACGTTGAGCGTGGAGCTGTGTTTGGTGTGCGGGGACCGCGCCTCCGGGC
GGCACTACGGAGCCATAAGCTGCGAAGGCTGCAAGGGATTCTTCAAGCGC
TCGATCCGGAAGCAGCTGGGCTACCAGTGTCGCGGGGCTATGAACTGCGA
GGTCACCAAGCACCACAGGAATCGGTGCCAGTTCTGTCGACTACAGAAGT
GCCTGGCCAGCGGCATGCGAACTGTGCAGCACGAGAGGAAACCGATTGTG
GACAGGAAGGAGGGGATCATCGCTGCTGCCGGTAGCTCATCCACTTCTGG
CGGCGGTAATGGCTCGTCCACCTACCTATCCGGCAAGTCCGGCTATCAGC
AGGGGCGTGGCAAGGGGCACAGTGTAAAGGCCGAATCCGCGGCCACGCCT
CCAGTGCACAGCGCGCCAGCAACGGCCTTCAATTTGAATGAGAATATATT
CCCGATGGGTTTGAATTTCGCAGAACTAACGCAGACATTGATGTTCGCTA
CCCAACAGCAGCAGCAACAACAGCAACAGCATCAACAGAGTGGTAGCTAT
TCGCCAGATATTCCGAAGGCAGATCCCGAGGATGACGAGGACGACTCAAT
GGACAACAGCAGCACGCTGTGCTTGCAGTTGCTCGCCNACAGCGCCAGCA
ANNCACACTCGCAGCACCTGAAAACTTTATGCTGGGGAAGTACCCACCGC
TCTGCCTACCACCTC
BS01238.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7199-PA | 1800 | Hr78-RA | 1..785 | 17..801 | 3906 | 99.8 | Plus |
| CG7199-PC | 1806 | Hr78-RC | 362..791 | 372..801 | 2131 | 99.7 | Plus |
| CG7199-PD | 1806 | Hr78-RD | 362..791 | 372..801 | 2131 | 99.7 | Plus |
| CG7199-PB | 1806 | Hr78-RB | 362..791 | 372..801 | 2131 | 99.7 | Plus |
| CG7199-PC | 1806 | Hr78-RC | 1..355 | 17..371 | 1775 | 100 | Plus |
| CG7199-PD | 1806 | Hr78-RD | 1..355 | 17..371 | 1775 | 100 | Plus |
| CG7199-PB | 1806 | Hr78-RB | 1..355 | 17..371 | 1775 | 100 | Plus |
| CG7199-PA | 1800 | Hr78-RA | 812..848 | 829..865 | 185 | 100 | Plus |
| CG7199-PC | 1806 | Hr78-RC | 818..854 | 829..865 | 185 | 100 | Plus |
| CG7199-PD | 1806 | Hr78-RD | 818..854 | 829..865 | 185 | 100 | Plus |
| CG7199-PB | 1806 | Hr78-RB | 818..854 | 829..865 | 185 | 100 | Plus |
| CG1133-PA | 1830 | opa-RA | 127..155 | 650..678 | 145 | 100 | Plus |
| CG3929-PA | 2217 | dx-RA | 1468..1496 | 653..681 | 145 | 100 | Plus |
| CG1864-PB | 3237 | Hr38-RB | 1333..1361 | 653..681 | 145 | 100 | Plus |
| CG32782-PC | 3765 | tlk-RC | 3640..3668 | 653..681 | 145 | 100 | Plus |
| CG32782-PD | 3765 | tlk-RD | 3640..3668 | 653..681 | 145 | 100 | Plus |
| CG3638-PD | 4215 | CG3638-RD | 4156..4183 | 653..680 | 140 | 100 | Plus |
| CG4798-PB | 1881 | l(2)k01209-RB | 181..212 | 653..684 | 135 | 96.8 | Plus |
| CG4798-PC | 1881 | l(2)k01209-RC | 181..212 | 653..684 | 135 | 96.8 | Plus |
| CG4798-PD | 1881 | l(2)k01209-RD | 181..212 | 653..684 | 135 | 96.8 | Plus |
| CG11987-PA | 1929 | tgo-RA | 1361..1387 | 651..677 | 135 | 100 | Plus |
| CG14938-PC | 2271 | crol-RC | 2080..2111 | 653..684 | 135 | 96.8 | Plus |
| CG14938-PD | 2637 | crol-RD | 2446..2477 | 653..684 | 135 | 96.8 | Plus |
| CG14938-PB | 2676 | crol-RB | 2485..2516 | 653..684 | 135 | 96.8 | Plus |
| CG14938-PA | 2889 | crol-RA | 2698..2729 | 653..684 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr78-RA | 2339 | CG7199-RA | 253..1100 | 17..865 | 4107 | 99.1 | Plus |
| Hr78-RF | 2175 | CG7199-RF | 83..936 | 17..865 | 4037 | 98.4 | Plus |
| Hr78-RE | 2182 | CG7199-RE | 90..943 | 17..865 | 4037 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21496427..21496743 | 371..55 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 21495599..21495868 | 641..372 | 1350 | 100 | Minus |
| 3L | 28110227 | 3L | 21495258..21495480 | 865..642 | 947 | 95.5 | Minus |
| 3L | 28110227 | 3L | 21496820..21496859 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:18:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2398 | 653..687 | 148 | 91.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6861 | 653..687 | 148 | 91.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6841 | 653..699 | 147 | 81.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1598 | 653..697 | 144 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2378 | 653..688 | 144 | 88.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6592..6676 | 648..728 | 144 | 68.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8048..8132 | 648..728 | 144 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2341 | 645..687 | 143 | 81.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2665 | 654..687 | 143 | 91.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2425 | 653..687 | 139 | 88.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6765 | 653..687 | 139 | 88.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6786 | 653..687 | 139 | 88.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6807 | 653..687 | 139 | 88.6 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..568 | 653..687 | 139 | 88.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1146 | 653..687 | 139 | 88.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2357 | 653..688 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2441 | 653..688 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2825 | 653..688 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6799 | 653..688 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6814 | 653..688 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2366 | 652..699 | 134 | 77.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6868..6901 | 652..685 | 134 | 88.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6757 | 652..688 | 131 | 83.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2386 | 653..687 | 130 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6840 | 653..687 | 130 | 85.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1099 | 646..688 | 130 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2496..2608 | 653..764 | 129 | 62.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 974..1015 | 652..693 | 129 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2850 | 653..697 | 128 | 78.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2414 | 653..688 | 126 | 83.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2837 | 653..688 | 126 | 83.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1121..1154 | 653..686 | 125 | 85.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2419 | 653..687 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2488 | 653..687 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6819 | 653..687 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1113 | 653..687 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1144 | 654..688 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1158 | 653..687 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6750 | 655..687 | 120 | 84.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1133..1165 | 653..685 | 120 | 84.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3323 | 653..685 | 120 | 84.8 | Plus |
| BS | 5142 | BS BS 5142bp | 2090..2122 | 653..685 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1549 | 646..687 | 119 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6568 | 653..688 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6877 | 653..688 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6878..6913 | 653..688 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6883 | 653..688 | 116 | 82.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1567 | 653..687 | 112 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2404 | 653..687 | 112 | 80 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7422..7463 | 653..694 | 111 | 73.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7951..7988 | 646..683 | 109 | 76.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9395..9432 | 646..683 | 109 | 76.3 | Plus |
BS01238.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:27 Download gff for
BS01238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-PA | 1..848 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:32 Download gff for
BS01238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7199-PA | 1..848 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:24 Download gff for
BS01238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 248..1100 | 13..865 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:18 Download gff for
BS01238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 248..1100 | 13..865 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:18 Download gff for
BS01238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21495258..21495480 | 642..865 | 96 | <- | Minus |
| 3L | 21495599..21495868 | 372..641 | 100 | <- | Minus |
| 3L | 21496427..21496741 | 57..371 | 100 | <- | Minus |
| 3L | 21496820..21496864 | 13..56 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:24 Download gff for
BS01238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21488358..21488580 | 642..865 | 96 | <- | Minus |
| arm_3L | 21488699..21488968 | 372..641 | 100 | <- | Minus |
| arm_3L | 21489527..21489841 | 57..371 | 100 | <- | Minus |
| arm_3L | 21489920..21489964 | 13..56 | 97 | | Minus |
BS01238.complete Sequence
1832 bp assembled on 2008-08-15
GenBank Submission: FJ634570
> BS01238.complete
GAAGTTATCAGTCGACATGGACGGCGTTAAGGTTGAGACGTTCATCAAAA
GCGAAGAAAACCGAGCGATGCCCTTGATCGGAGGAGGCAGTGCCTCAGGC
GGCACTCCTCTGCCAGGAGGCGGCGTGGGAATGGGAGCCGGAGCATCCGC
AACGTTGAGCGTGGAGCTGTGTTTGGTGTGCGGGGACCGCGCCTCCGGGC
GGCACTACGGAGCCATAAGCTGCGAAGGCTGCAAGGGATTCTTCAAGCGC
TCGATCCGGAAGCAGCTGGGCTACCAGTGTCGCGGGGCTATGAACTGCGA
GGTCACCAAGCACCACAGGAATCGGTGCCAGTTCTGTCGACTACAGAAGT
GCCTGGCCAGCGGCATGCGAACTGTGCAGCACGAGAGGAAACCGATTGTG
GACAGGAAGGAGGGGATCATCGCTGCTGCCGGTAGCTCATCCACTTCTGG
CGGCGGTAATGGCTCGTCCACCTACCTATCCGGCAAGTCCGGCTATCAGC
AGGGGCGTGGCAAGGGGCACAGTGTAAAGGCCGAATCCGCGGCCACGCCT
CCAGTGCACAGCGCGCCAGCAACGGCCTTCAATTTGAATGAGAATATATT
CCCGATGGGTTTGAATTTCGCAGAACTAACGCAGACATTGATGTTCGCTA
CCCAACAGCAGCAGCAACAACAGCAACAGCATCAACAGAGTGGTAGCTAT
TCGCCAGATATTCCGAAGGCAGATCCCGAGGATGACGAGGACGACTCAAT
GGACAACAGCAGCACGCTGTGCTTGCAGTTGCTCGCCAACAGCGCCAGCA
ACAACAACTCGCAGCACCTGAACTTTAATGCTGGGGAAGTACCCACCGCT
CTGCCTACCACCTCGACAATGGGGCTTATTCAGAGTTCGCTGGACATGCG
GGTCATCCACAAGGGACTGCAGATCCTGCAGCCCATCCAAAACCAACTGG
AGCGAAATGGTAATCTGAGTGTGAAGCCCGAGTGCGATTCAGAGGCGGAG
GACAGTGGCACCGAGGATGCCGTAGACGCGGAGCTGGAGCACATGGAACT
AGACTTTGAGTGCGGTGGGAACCGAAGCGGTGGAAGCGATTTTGCTATCA
ATGAGGCGGTCTTTGAACAGGATCTTCTCACCGATGTGCAGTGTGCCTTT
CATGTGCAACCGCCGACTTTGGTCCACTCGTATTTAAATATTCATTATGT
GTGTGAGACGGGCTCGCGAATCATTTTTCTCACCATCCATACCCTTCGAA
AGGTTCCAGTTTTCGAACAATTGGAAGCCCATACACAGGTGAAACTCCTG
AGAGGAGTGTGGCCAGCATTAATGGCTATAGCTTTGGCGCAGTGTCAGGG
TCAGCTTTCGGTGCCCACCATTATCGGGCAGTTTATTCAAAGCACTCGCC
AGCTAGCGGATATCGATAAGATCGAACCGTTGAAGATCTCGAAGATGGCA
AATCTCACCAGGACCCTGCACGACTTTGTCCAGGAGCTCCAGTCACTGGA
TGTTACTGATATGGAGTTTGGCTTGCTGCGTCTGATCTTGCTCTTCAATC
CAACGCTCTTGCAGCAGCGCAAGGAGCGGTCGTTGCGAGGCTACGTCCGC
AGAGTCCAACTCTACGCTCTGTCAAGTTTGAGAAGGCAGGGTGGCATCGG
CGGCGGCGAGGAGCGCTTTAATGTTCTGGTGGCTCGCCTTCTTCCGCTCA
GCAGCCTGGACGCAGAGGCCATGGAGGAGCTGTTCTTCGCCAACTTGGTG
GGGCAGATGCAGATGGATGCTCTTATTCCGTTCATACTGATGACCAGCAA
CACCAGTGGACTGTAGAAGCTTTCTAGACCAT
BS01238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr78-RA | 1800 | CG7199-PA | 1..1800 | 17..1816 | 9000 | 100 | Plus |
| Hr78-RF | 1806 | CG7199-PF | 1..1806 | 17..1816 | 8905 | 99.7 | Plus |
| Hr78-RE | 1806 | CG7199-PE | 1..1806 | 17..1816 | 8905 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr78-RA | 2339 | CG7199-RA | 253..2052 | 17..1816 | 9000 | 100 | Plus |
| Hr78-RF | 2175 | CG7199-RF | 83..1888 | 17..1816 | 8905 | 99.7 | Plus |
| Hr78-RE | 2182 | CG7199-RE | 90..1895 | 17..1816 | 8905 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21494306..21495480 | 1816..642 | 5875 | 100 | Minus |
| 3L | 28110227 | 3L | 21496427..21496743 | 371..55 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 21495599..21495868 | 641..372 | 1350 | 100 | Minus |
| 3L | 28110227 | 3L | 21496820..21496859 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2509 | 653..822 | 174 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6900 | 653..816 | 164 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6932 | 653..817 | 163 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2577 | 653..841 | 155 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2496..2658 | 653..818 | 154 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6914 | 653..818 | 154 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2484 | 652..815 | 150 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2398 | 653..687 | 148 | 91.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6861 | 653..687 | 148 | 91.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6841 | 653..699 | 147 | 81.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1598 | 653..697 | 144 | 80 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6592..6676 | 648..728 | 144 | 68.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8048..8132 | 648..728 | 144 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2341 | 645..687 | 143 | 81.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2665 | 654..687 | 143 | 91.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6765 | 653..687 | 139 | 88.6 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..568 | 653..687 | 139 | 88.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1146 | 653..687 | 139 | 88.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2441 | 653..688 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2825 | 653..688 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6814 | 653..688 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6868..6901 | 652..685 | 134 | 88.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6757 | 652..688 | 131 | 83.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2386 | 653..687 | 130 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6840 | 653..687 | 130 | 85.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1099 | 646..688 | 130 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2533 | 653..822 | 129 | 60.2 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 974..1015 | 652..693 | 129 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2850 | 653..697 | 128 | 78.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2837 | 653..688 | 126 | 83.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1121..1154 | 653..686 | 125 | 85.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2488 | 653..687 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6819 | 653..687 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1113 | 653..687 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1144 | 654..688 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1158 | 653..687 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6750 | 655..687 | 120 | 84.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1133..1165 | 653..685 | 120 | 84.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3323 | 653..685 | 120 | 84.8 | Plus |
| BS | 5142 | BS BS 5142bp | 2090..2122 | 653..685 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1549 | 646..687 | 119 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6568 | 653..688 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6877 | 653..688 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6878..6913 | 653..688 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6883 | 653..688 | 116 | 82.1 | Plus |
BS01238.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:35 Download gff for
BS01238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 217..2023 | 13..1820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:15 Download gff for
BS01238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 253..2052 | 17..1816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:09 Download gff for
BS01238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 222..2021 | 17..1816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:14 Download gff for
BS01238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 253..2052 | 17..1816 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:14 Download gff for
BS01238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21494306..21495480 | 642..1816 | 100 | <- | Minus |
| 3L | 21495599..21495868 | 372..641 | 100 | <- | Minus |
| 3L | 21496427..21496741 | 57..371 | 100 | <- | Minus |
| 3L | 21496820..21496859 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:15 Download gff for
BS01238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21487406..21488580 | 642..1816 | 100 | <- | Minus |
| arm_3L | 21488699..21488968 | 372..641 | 100 | <- | Minus |
| arm_3L | 21489527..21489841 | 57..371 | 100 | <- | Minus |
| arm_3L | 21489920..21489959 | 17..56 | 100 | | Minus |
BS01238.pep Sequence
Translation from 16 to 1815
> BS01238.pep
MDGVKVETFIKSEENRAMPLIGGGSASGGTPLPGGGVGMGAGASATLSVE
LCLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMNCEVTKHH
RNRCQFCRLQKCLASGMRTVQHERKPIVDRKEGIIAAAGSSSTSGGGNGS
STYLSGKSGYQQGRGKGHSVKAESAATPPVHSAPATAFNLNENIFPMGLN
FAELTQTLMFATQQQQQQQQQHQQSGSYSPDIPKADPEDDEDDSMDNSST
LCLQLLANSASNNNSQHLNFNAGEVPTALPTTSTMGLIQSSLDMRVIHKG
LQILQPIQNQLERNGNLSVKPECDSEAEDSGTEDAVDAELEHMELDFECG
GNRSGGSDFAINEAVFEQDLLTDVQCAFHVQPPTLVHSYLNIHYVCETGS
RIIFLTIHTLRKVPVFEQLEAHTQVKLLRGVWPALMAIALAQCQGQLSVP
TIIGQFIQSTRQLADIDKIEPLKISKMANLTRTLHDFVQELQSLDVTDME
FGLLRLILLFNPTLLQQRKERSLRGYVRRVQLYALSSLRRQGGIGGGEER
FNVLVARLLPLSSLDAEAMEELFFANLVGQMQMDALIPFILMTSNTSGL*
BS01238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr78-PA | 599 | CG7199-PA | 1..599 | 1..599 | 3085 | 100 | Plus |
| Hr78-PF | 601 | CG7199-PF | 1..601 | 1..599 | 3068 | 99.5 | Plus |
| Hr78-PE | 601 | CG7199-PE | 1..601 | 1..599 | 3068 | 99.5 | Plus |
| Hr78-PB | 601 | CG7199-PB | 1..601 | 1..599 | 3068 | 99.5 | Plus |
| Hr78-PD | 601 | CG7199-PD | 1..601 | 1..599 | 3068 | 99.5 | Plus |
