Clone Sequence Records
BS01239.3prime Sequence
861 bp (805 high quality bases) assembled on 2005-11-29
> BS01239.3prime
ATGGTCTAGAAAGCTTCTATTCGCGCAGATTCTTTGTCAGCAGCAGGTTA
TTGTGGTGGCCGGACAGGTGACGGACGAGCTCCTGTACCGACTCGAAGCA
CATGGAGCAGAAGCAGCAGCTGTACCGGTTCTCCGTATCCGCCCCGTTGG
TGGTGGTGATGACGTTCCGGTGAACCGAGCACAGATGCTTCAGCAGGTGG
GCCTTCTGCTTGAACATGGCCACGCAAAGGCGGCAGGCGAACGGCTTTTC
GCCGGTGTGAACGCGCAGATGGGTCTTGAGGTTCCAGGACATGCCGAACT
GTTTGCCACAGTACTCGCATCGATACTCCCGGACCGAGGAGGCGTGCGTG
TTGCTGCCGGCCAAGTTCGCACCCGAACCGGAGGCCGACCCACTGCGTCC
CTCCGGATGATCCAGGTTTAGGCTGATGTGCGACAGACTAGAGAGTCGCG
ACTGGAGATTGGGCATTGCGGACATGGCTGCGTTCTGGTTGGACTGCCAC
TGGTACACGAACTGGGGGCCCAAGTGCATCGGTATCTCGGGACTCTGGGC
TCGATTGCGCTGCGCCTCCAGCAGATGCTTCCTGTCCGGCGTCAGTGTGT
CCCCATTGAGTGCTCCGTCCTCCAGGTGCGCCAGCATGTTCTTCTCCGAT
CCAAAGCCCGAAATGGGCGACGTCGTCGACTTGGCCAAGCGCAGTTCCTC
CAGTAGGCTGTGTGGGTACGAAGTGAACGGCTGGTTGTCGCTCTGCGTGT
TGTGGAATCCGGGTCGCCGCTTCCGATGCGGCGTTACCACGTAGTTCTCC
GGCGAGCTNGTGATGTCCGACCCATCGGACAGCGGCTTCATCACATCCTT
GTGCGAGTCGA
BS01239.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5575-PA | 1806 | ken-RA | 962..1806 | 861..17 | 4181 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:45:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ken-RA | 3070 | CG5575-RA | 1561..2405 | 861..17 | 4199 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:45:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23875933..23876777 | 861..17 | 4199 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:45:20 has no hits.
BS01239.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:28 Download gff for
BS01239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ken-PA | 963..1806 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:33 Download gff for
BS01239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5575-PA | 963..1806 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:35:33 Download gff for
BS01239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ken-RA | 1562..2405 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:48 Download gff for
BS01239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ken-RA | 1562..2405 | 17..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:48 Download gff for
BS01239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23875934..23876777 | 17..860 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:35:33 Download gff for
BS01239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19763457..19764300 | 17..860 | 99 | | Minus |
BS01239.5prime Sequence
834 bp (673 high quality bases) assembled on 2005-11-29
> BS01239.5prime
GAAGTTATCAGTCGACATGAAAGAGTTTCAAAGAATGTTGATGTTGCAAT
ACAGCAAGCATGGCGAGTGCATACTCAAAGAAATCGGAGCAGCCTTCAGA
GGGGAGCACCCGGCGGACCTGACCATCGTCTGCGAGAACAAAGTAAAGCT
GCACGCCCACAAGTTGGTCCTGGCGGCCGCCAGTCCGTTGATAAGGAACC
TGCTGGAGGACACCCACTTGAGCGACTGCTCCACCACCGTATACTTTCCG
GACGTGAATGCCACCTACTTTAAGTTCCTGCTGGACTTCCTGTACTCGGG
GCAGACGTGCATTACCTCACGGGATGTGAACTATCTGCACGACCTGCTGC
TGCTGCTGCAGATCAAGTCGGACAGCTGGAAGACCACCGACTCCGCCTAT
CTGAGCAGCAAGTGCGGCGGCCTGCGGGATCGGGCCGACAGGCGGAAGCA
GCAGTACACCAGCCCACAGAATTTGGAGCCGGATCAGACGCTCAAGTACG
AGGTGGACAGCGTGGATGAGTCGCGCAACGCCGCGGATTTCTCGTCCGCC
TTCAACTCCAACGACAATTGCGAGAGTGCGGCCGAGTGCGAGCGGAGTGG
TGGCCACAACAACAAGGAGGAGGACGAGGACGACTGCACCCACAAGGACA
ACAAGAGCGACAAGGACACGGACGATATTGTAAATCTCTCGAATGCACCG
CCCAGCGGCACCAGCGGCAGTAACAGCAACATCAGCACCAGCAGCAACCA
CCAGCAGCAACAGCACCACCACCATCACCACCACAACCACAACAACAACA
ATAATAAATAAACACACAACAGCAGCAGCTCAAC
BS01239.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5575-PA | 1806 | ken-RA | 1..791 | 17..807 | 3930 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ken-RA | 3070 | CG5575-RA | 600..1417 | 17..834 | 4000 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23875149..23875789 | 194..834 | 3100 | 98.9 | Plus |
| 2R | 25286936 | 2R | 23874923..23875095 | 24..196 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:10:15 has no hits.
BS01239.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:29 Download gff for
BS01239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ken-PA | 1..818 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:34 Download gff for
BS01239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5575-PA | 1..818 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:54 Download gff for
BS01239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ken-RA | 600..1417 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:34 Download gff for
BS01239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ken-RA | 600..1417 | 17..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:34 Download gff for
BS01239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23874920..23875094 | 18..195 | 97 | -> | Plus |
| 2R | 23875151..23875789 | 196..834 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:54 Download gff for
BS01239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19762443..19762617 | 18..195 | 97 | -> | Plus |
| arm_2R | 19762674..19763312 | 196..834 | 99 | | Plus |
BS01239.complete Sequence
1838 bp assembled on 2008-08-15
GenBank Submission: FJ634571
> BS01239.complete
GAAGTTATCAGTCGACATGAAAGAGTTTCAAAGAATGTTGATGTTGCAAT
ACAGCAAGCATGGCGAGTGCATACTCAAAGAAATCGGAGCAGCCTTCAGA
GGGGAGCACCCGGCGGACCTGACCATCGTCTGCGAGAACAAAGTAAAGCT
GCACGCCCACAAGTTGGTCCTGGCGGCCGCCAGTCCGTTGATAAGGAACC
TGCTGGAGGACACCCACTTGAGCGACTGCTCCACCACCGTATACTTTCCG
GACGTGAATGCCACCTACTTTAAGTTCCTGCTGGACTTCCTGTACTCGGG
GCAGACGTGCATTACCTCACGGGATGTGAACTATCTGCACGACCTGCTGC
TGCTGCTGCAGATCAAGTCGGACAGCTGGAAGACCACCGACTCCGCCTAT
CTGAGCAGCAAGTGCGGCGGCCTGCGGGATCGGGCCGACAGGCGGAAGCA
GCAGTACACCAGCCCACAGAATTTGGAGCCGGATCAGACGCTCAAGTACG
AGGTGGACAGCGTGGATGAGTCGCGCAACGCCGCGGATTTCTCGTCCGCC
TTCAACTCCAACGACAATTGCGAGAGTGCGGCCGAGTGCGAGCGGAGTGG
TGGCCACAACAACAAGGAGGAGGACGAGGACGACTGCACCCACAAGGACA
ACAAGAGCGACAAGGACACGGACGAAATTGTAAATCTCTCGAATGCACCG
CCCAGCGGCACCAGCGGCAGTAACAGCAACATCAGCACCAGCAGCAACCA
CCAGCAGCAACAGCACCACCACCATCACCACCACAACCACAACAACAACA
ATAATAATAACAACAACAACAGCAGCAGCTCAACCATAAATCCCGTCAAC
CTTTCACTCGACCTTCGGACGAAAAGCGAGAACTCGGCGAGCAGAACCCT
GGGATCCGGATCAGACCACAGCGGCATCGACCTGGCAGTGACAGCGAGCG
AAAGCACGAAACGGAAGGGCCTGTTCTTCGACTCGCACAAGGATGTGATG
AAGCCGCTGTCCGATGGGTCGGACATCAACAGCTCGCCGGAGAACTACGT
GGTAACGCCGCATCGGAAGCGGCGACCCGGATTCCACAACACGCAGAGCG
ACAACCAGCCGTTCACTTCGTACCCACACAGCCTACTGGAGGAACTGCGC
TTGGCCAAGTCGACGACGTCGCCCATTTCGGGCTTTGGATCGGAGAAGAA
CATGCTGGCGCACCTGGAGGACGGAGCACTCAATGGGGACACACTGACGC
CGGACAGGAAGCATCTGCTGGAGGCGCAGCGCAATCGAGCCCAGAGTCCC
GAGATACCGATGCACTTGGGCCCCCAGTTCGTGTACCAGTGGCAGTCCAA
CCAGAACGCAGCCATGTCCGCAATGCCCAATCTCCAGTCGCGACTCTCTA
GTCTGTCGCACATCAGCCTAAACCTGGATCATCCGGAGGGACGCAGTGGG
TCGGCCTCCGGTTCGGGTGCGAACTTGGCCGGCAGCAACACGCACGCCTC
CTCGGTCCGGGAGTATCGATGCGAGTACTGTGGCAAACAGTTCGGCATGT
CCTGGAACCTCAAGACCCATCTGCGCGTTCACACCGGCGAAAAGCCGTTC
GCCTGCCGCCTTTGCGTGGCCATGTTCAAGCAGAAGGCCCACCTGCTGAA
GCATCTGTGCTCGGTTCACCGGAACGTCATCACCACCACCAACGGGGCGG
ATACGGAGAACCGGTACAGCTGCTGCTTCTGCTCCATGTGCTTCGAGTCG
GTACAGGAGCTCGTCCGTCACCTGTCCGGCCACCACAATAACCTGCTGCT
GACAAAGAATCTGCGCGAATAGAAGCTTTCTAGACCAT
BS01239.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ken-RA | 1806 | CG5575-PA | 1..1806 | 17..1822 | 9030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ken-RA | 3070 | CG5575-RA | 600..2405 | 17..1822 | 9030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23875149..23876777 | 194..1822 | 8145 | 100 | Plus |
| 2R | 25286936 | 2R | 23874923..23875095 | 24..196 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:27:26 has no hits.
BS01239.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:37 Download gff for
BS01239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ken-RA | 598..2403 | 17..1822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:15 Download gff for
BS01239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ken-RA | 600..2405 | 17..1822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:47 Download gff for
BS01239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ken-RA | 598..2403 | 17..1822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:56 Download gff for
BS01239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ken-RA | 600..2405 | 17..1822 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:56 Download gff for
BS01239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23874920..23875094 | 18..195 | 97 | -> | Plus |
| 2R | 23875151..23876777 | 196..1822 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:15 Download gff for
BS01239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19762443..19762617 | 18..195 | 97 | -> | Plus |
| arm_2R | 19762674..19764300 | 196..1822 | 100 | | Plus |
BS01239.pep Sequence
Translation from 16 to 1821
> BS01239.pep
MKEFQRMLMLQYSKHGECILKEIGAAFRGEHPADLTIVCENKVKLHAHKL
VLAAASPLIRNLLEDTHLSDCSTTVYFPDVNATYFKFLLDFLYSGQTCIT
SRDVNYLHDLLLLLQIKSDSWKTTDSAYLSSKCGGLRDRADRRKQQYTSP
QNLEPDQTLKYEVDSVDESRNAADFSSAFNSNDNCESAAECERSGGHNNK
EEDEDDCTHKDNKSDKDTDEIVNLSNAPPSGTSGSNSNISTSSNHQQQQH
HHHHHHNHNNNNNNNNNNSSSSTINPVNLSLDLRTKSENSASRTLGSGSD
HSGIDLAVTASESTKRKGLFFDSHKDVMKPLSDGSDINSSPENYVVTPHR
KRRPGFHNTQSDNQPFTSYPHSLLEELRLAKSTTSPISGFGSEKNMLAHL
EDGALNGDTLTPDRKHLLEAQRNRAQSPEIPMHLGPQFVYQWQSNQNAAM
SAMPNLQSRLSSLSHISLNLDHPEGRSGSASGSGANLAGSNTHASSVREY
RCEYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSV
HRNVITTTNGADTENRYSCCFCSMCFESVQELVRHLSGHHNNLLLTKNLR
E*
BS01239.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ken-PA | 601 | CG5575-PA | 1..601 | 1..601 | 3201 | 100 | Plus |
| CG10348-PB | 540 | CG10348-PB | 49..393 | 232..592 | 192 | 23.4 | Plus |
| CG10348-PC | 540 | CG10348-PC | 49..393 | 232..592 | 192 | 23.4 | Plus |
| CG7372-PA | 971 | CG7372-PA | 369..710 | 201..592 | 179 | 22.9 | Plus |
| Lin29-PB | 1140 | CG2052-PB | 349..528 | 406..598 | 178 | 27.2 | Plus |
