Clone Sequence Records
BS01243.3prime Sequence
898 bp (785 high quality bases) assembled on 2005-11-29
> BS01243.3prime
ATGGTCTAGAAAGCTTTTAGGAAATCACAATGTTGATCAGATCGTCCAGA
GGCTGGTCCGCCGAGTGCGGCTGAGAGGCGGCGTGTGCCTTTTGCATGTG
AGTCTTGAGCTTAATGTGCGTGACAAATCTTTCCTGACAGAGATCGCATT
TGTAGTAGGTTTTGCCCGTGTGAGTTCGCTGATGCAGCCGCAATGACTTC
TCAAACAGATAGGCTCGACCGCAAACGTTGCACTTGAAGTTCTTCTCCAA
GACCTCGTGACTCAAGCGATGCTGGGTGAGCACATACTTGAGGGCGAATG
CCTTGCCGCAAACATCGCACACATTGGGCTTCTCCTTCTCGTGGGTCTTG
ATGTGCCACTTCATGTCCTGGGCGCGCTTGAACCGCTTGGAACAGTGCGG
GCAGGCGTGCGGTCGATCCTTCTCGGAATGCACGGCAGCGTGCCGCTCCA
GAGCGGACTTCATGTTGAACCTCTGGCTGCAGCTGCCGCACTGAAAGAGT
CCGGAGTACTGGCGTTCCCGCTTCTGTTGCAGCACCCGTTTGTTGTTCGC
TATGATGGGAGCGCCAGGACGCTGCAAGTGCTCCGCGGACATGTGGTGGA
TCAAATCCGGTTCGCTGGAGAAGGGCTGGCGGCACAGCATGCACTCACTC
CGCTCGATGGCAGTCAGGTTCTCCCTGTGCCGCTCCAGCATGTGAATCCT
TTTCTCCGCATAGGATGCAAAGACCTCCGTGCAATTGGCACACTTGTAGG
GCTTCTCCCCGCCATGCTGCCGGTAAATGTGCCAGCGAAGGGTCTTCAGA
TGGATGAATGTCTTGCCGCAGAAGCCGCAGTGTTCGCTCTTCCTGGAACT
GGTGCCCGAGTGGGTGGGCTCGTGGCACATGAGATGCCGCTGGCTGAT
BS01243.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8301-PA | 1824 | CG8301-RA | 943..1824 | 898..17 | 4385 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8301-RA | 3094 | CG8301-RA | 1606..2487 | 898..17 | 4395 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9585215..9585686 | 724..253 | 2360 | 100 | Minus |
| 3R | 32079331 | 3R | 9585748..9585898 | 253..103 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 9584484..9584570 | 810..724 | 435 | 100 | Minus |
| 3R | 32079331 | 3R | 9585956..9586041 | 102..17 | 430 | 100 | Minus |
| 3R | 32079331 | 3R | 9584243..9584330 | 898..811 | 425 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:21:12 has no hits.
BS01243.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:32 Download gff for
BS01243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-PA | 943..1824 | 17..898 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:38 Download gff for
BS01243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-PA | 943..1824 | 17..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:42:34 Download gff for
BS01243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-RA | 1606..2487 | 17..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:33:06 Download gff for
BS01243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-RA | 1606..2487 | 17..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:33:06 Download gff for
BS01243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9584243..9584330 | 811..898 | 98 | -> | Minus |
| 3R | 9584484..9584570 | 724..810 | 100 | -> | Minus |
| 3R | 9585216..9585686 | 253..723 | 100 | -> | Minus |
| 3R | 9585749..9585898 | 103..252 | 100 | -> | Minus |
| 3R | 9585956..9586041 | 17..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:42:34 Download gff for
BS01243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5409965..5410052 | 811..898 | 98 | -> | Minus |
| arm_3R | 5410206..5410292 | 724..810 | 100 | -> | Minus |
| arm_3R | 5410938..5411408 | 253..723 | 100 | -> | Minus |
| arm_3R | 5411471..5411620 | 103..252 | 100 | -> | Minus |
| arm_3R | 5411678..5411763 | 17..102 | 100 | | Minus |
BS01243.5prime Sequence
812 bp (728 high quality bases) assembled on 2005-11-29
> BS01243.5prime
GAAGTTATCAGTCGACATGGAAACGTGCCGCACCTGTGCGATTTCCATGT
TCGTGTGCGATTTCGAAAATGGCAGCAATAACAGCCACTTCCTGGACCTC
CATCATCCCAACTGCTGGCCCAGCGAAATGGCCCAGATTCGCCTCCAGTT
CGCCAACTGGAATCTAAAGATATCTCCCAACGATGGACTGCCCCAGAAGA
TCTGCAGCGACTGCTTCACCAAGTTCTGCTCGATCAACGCATTCCGCTTG
GCCTGCCAGGAGGCACAGCTGAAGCTGTCCCACATCTACGACAAGATCGA
TGCCAGCAGCCTGGAAGATGATGAGATTGGACAGGAGGACTTGGAGCCAG
CGGAAGAGCATCAGGAAACGGAAACTACCAAACCAACAACGACGGTTTCA
GCCGAAACACAACCAAACAACACTGCCAGTGATCCCATAGAGATTTTCGT
GGATGCCGTAGACATCGACGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGC
AGCAGCAGCAGTATGATGAGGAGGTGGAGGAACCAATCACGGATGAGTCT
GCTCCCCCACAACTGACCATTAGCTATGCCTGCAAGTTCTGTCTGCGCCC
GCAGGAGAACTACCAGCTGCAGCAACTCTTGTTGGAGCACATCAACGCTA
GCCACGATCCGGAGCAACCGTACAATTGTCCGGAGTGCGAGGCACGCTTT
CAGGACGCCGCATCGCGCACAGTTCACCTGAAAAGCAGCCACGTGGAGAA
GCAACATGCCTGCGGCGTGTGCGGCAAGAAGTACGGCGACAGGCACAATC
TGCGCCACCACG
BS01243.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8301-PA | 1824 | CG8301-RA | 1..796 | 17..812 | 3980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8301-RA | 3094 | CG8301-RA | 663..1459 | 16..812 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9583452..9584096 | 168..812 | 3225 | 100 | Plus |
| 3R | 32079331 | 3R | 9581968..9582121 | 16..169 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:44:49 has no hits.
BS01243.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:33 Download gff for
BS01243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:39 Download gff for
BS01243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:52:47 Download gff for
BS01243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-RA | 657..1459 | 9..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:15 Download gff for
BS01243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-RA | 657..1459 | 9..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:15 Download gff for
BS01243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9581962..9582121 | 9..169 | 98 | -> | Plus |
| 3R | 9583454..9584096 | 170..812 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:52:47 Download gff for
BS01243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5407684..5407843 | 9..169 | 98 | -> | Plus |
| arm_3R | 5409176..5409818 | 170..812 | 100 | | Plus |
BS01243.complete Sequence
1856 bp (1856 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634572
> BS01243.complete
GAAGTTATCAGTCGACATGGAAACGTGCCGCACCTGTGCGATTTCCATGT
TCGTGTGCGATTTCGAAAATGGCAGCAATAACAGCCACTTCCTGGACCTC
CATCATCCCAACTGCTGGCCCAGCGAAATGGCCCAGATTCGCCTCCAGTT
CGCCAACTGGAATCTAAAGATATCTCCCAACGATGGACTGCCCCAGAAGA
TCTGCAGCGACTGCTTCACCAAGTTCTGCTCGATCAACGCATTCCGCTTG
GCCTGCCAGGAGGCACAGCTGAAGCTGTCCCACATCTACGACAAGATCGA
TGCCAGCAGCCTGGAAGATGATGAGATTGGACAGGAGGACTTGGAGCCAG
CGGAAGAGCATCAGGAAACGGAAACTACCAAACCAACAACGACGGTTTCA
GCCGAAACACAACCAAACAACACTGCCAGTGATCCCATAGAGATTTTCGT
GGATGCCGTAGACATCGACGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGC
AGCAGCAGCAGTATGATGAGGAGGTGGAGGAACCAATCACGGATGAGTCT
GCTCCCCCACAACTGACCATTAGCTATGCCTGCAAGTTCTGTCTGCGCCC
GCAGGAGAACTACCAGCTGCAGCAACTCTTGTTGGAGCACATCAACGCTA
GCCACGATCCGGAGCAACCGTACAATTGTCCGGAGTGCGAGGCACGCTTT
CAGGACGCCGCATCGCGCACAGTTCACCTGAAAAGCAGCCACGTGGAGAA
GCAACATGCCTGCGGCGTGTGCGGCAAGAAGTACGGCGACAGGCACAATC
TGCGCCACCACGTTGAGAAGTACCATTCGGAGACGGACTTTGAGTGCGCG
CTATGCGAGAAGCGCTTCTACACCCGCAAGAGCCTCAACTATCACATGAA
GTGGCACAATCCGGATCGCCAGTTCAAGTGTCGCCACAGCGGATGCGAGC
GACTCTTCATCAGCCAGCGGCATCTCATGTGCCACGAGGCCACCCACTCG
GGCACCAGTTCCAGGAAGAGCGAACACTGCGGCTTCTGCGGCAAGACATT
CATCCATCTGAAGACCCTTCGCTGGCACATTTACCGGCAGCATGGCGGGG
AGAAGCCCTACAAGTGTGCCAATTGCACGGAGGTCTTTGCATCCTATGCG
GAGAAAAGGATTCACATGCTGGAGCGGCACAGGGAGAACCTGACTGCCAT
CGAGCGGAGTGAGTGCATGCTGTGCCGCCAGCCCTTCTCCAGCGAACCGG
ATTTGATCCACCACATGTCCGCGGAGCACTTGCAGCGTCCTGGCGCTCCC
ATCATAGCGAACAACAAACGGGTGCTGCAACAGAAGCGGGAACGCCAGTA
CTCCGGACTCTTTCAGTGCGGCAGCTGCAGCCAGAGGTTCAACATGAAGT
CCGCTCTGGAGCGGCACGCTGCCGTGCATTCCGAGAAGGATCGACCGCAC
GCCTGCCCGCACTGTTCCAAGCGGTTCAAGCGCGCCCAGGACATGAAGTG
GCACATCAAGACCCACGAGAAGGAGAAGCCCAATGTGTGCGATGTTTGCG
GCAAGGCATTCGCCCTCAAGTATGTGCTCACCCAGCATCGCTTGAGTCAC
GAGGTCTTGGAGAAGAACTTCAAGTGCAACGTTTGCGGTCGAGCCTATCT
GTTTGAGAAGTCATTGCGGCTGCATCAGCGAACTCACACGGGCAAAACCT
ACTACAAATGCGATCTCTGTCAGGAAAGATTTGTCACGCACATTAAGCTC
AAGACTCACATGCAAAAGGCACACGCCGCCTCTCAGCCGCACTCGGCGGA
CCAGCCTCTGGACGATCTGATCAACATTGTGATTTCCTAAAAGCTTTCTA
GACCAT
BS01243.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8301-RA | 1824 | CG8301-PA | 1..1824 | 17..1840 | 9120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8301-RA | 3094 | CG8301-RA | 663..2487 | 16..1840 | 9125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9583452..9584330 | 168..1046 | 4395 | 100 | Plus |
| 3R | 32079331 | 3R | 9585215..9585686 | 1133..1604 | 2360 | 100 | Plus |
| 3R | 32079331 | 3R | 9581968..9582121 | 16..169 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 9585748..9585898 | 1604..1754 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 9584484..9584570 | 1047..1133 | 435 | 100 | Plus |
| 3R | 32079331 | 3R | 9585956..9586041 | 1755..1840 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:49:11 has no hits.
BS01243.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:38 Download gff for
BS01243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-RA | 1..1824 | 17..1840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:49 Download gff for
BS01243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-RA | 651..2481 | 9..1840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:36 Download gff for
BS01243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-RA | 664..2485 | 17..1838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:38 Download gff for
BS01243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-RA | 651..2481 | 9..1840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:25 Download gff for
BS01243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8301-RA | 664..2485 | 17..1838 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:25 Download gff for
BS01243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9584484..9584570 | 1047..1133 | 100 | -> | Plus |
| 3R | 9585749..9585898 | 1605..1754 | 100 | -> | Plus |
| 3R | 9585956..9586039 | 1755..1838 | 100 | | Plus |
| 3R | 9581969..9582121 | 17..169 | 100 | -> | Plus |
| 3R | 9583454..9584330 | 170..1046 | 100 | -> | Plus |
| 3R | 9585216..9585686 | 1134..1604 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:36 Download gff for
BS01243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5407691..5407843 | 17..169 | 100 | -> | Plus |
| arm_3R | 5409176..5410052 | 170..1046 | 100 | -> | Plus |
| arm_3R | 5410206..5410292 | 1047..1133 | 100 | -> | Plus |
| arm_3R | 5410938..5411408 | 1134..1604 | 100 | -> | Plus |
| arm_3R | 5411471..5411620 | 1605..1754 | 100 | -> | Plus |
| arm_3R | 5411678..5411761 | 1755..1838 | 100 | | Plus |
BS01243.pep Sequence
Translation from 16 to 1839
> BS01243.pep
METCRTCAISMFVCDFENGSNNSHFLDLHHPNCWPSEMAQIRLQFANWNL
KISPNDGLPQKICSDCFTKFCSINAFRLACQEAQLKLSHIYDKIDASSLE
DDEIGQEDLEPAEEHQETETTKPTTTVSAETQPNNTASDPIEIFVDAVDI
DEAEEEEEEEEQQQQYDEEVEEPITDESAPPQLTISYACKFCLRPQENYQ
LQQLLLEHINASHDPEQPYNCPECEARFQDAASRTVHLKSSHVEKQHACG
VCGKKYGDRHNLRHHVEKYHSETDFECALCEKRFYTRKSLNYHMKWHNPD
RQFKCRHSGCERLFISQRHLMCHEATHSGTSSRKSEHCGFCGKTFIHLKT
LRWHIYRQHGGEKPYKCANCTEVFASYAEKRIHMLERHRENLTAIERSEC
MLCRQPFSSEPDLIHHMSAEHLQRPGAPIIANNKRVLQQKRERQYSGLFQ
CGSCSQRFNMKSALERHAAVHSEKDRPHACPHCSKRFKRAQDMKWHIKTH
EKEKPNVCDVCGKAFALKYVLTQHRLSHEVLEKNFKCNVCGRAYLFEKSL
RLHQRTHTGKTYYKCDLCQERFVTHIKLKTHMQKAHAASQPHSADQPLDD
LINIVIS*
BS01243.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8301-PA | 607 | CG8301-PA | 1..607 | 1..607 | 3345 | 100 | Plus |
| crol-PI | 962 | CG14938-PI | 333..703 | 187..593 | 522 | 27.8 | Plus |
| crol-PE | 962 | CG14938-PE | 333..703 | 187..593 | 522 | 27.8 | Plus |
| crol-PA | 962 | CG14938-PA | 333..703 | 187..593 | 522 | 27.8 | Plus |
| crol-PF | 907 | CG14938-PF | 305..670 | 187..586 | 512 | 30 | Plus |
| crol-PI | 962 | CG14938-PI | 215..613 | 181..592 | 434 | 25.2 | Plus |
| crol-PE | 962 | CG14938-PE | 215..613 | 181..592 | 434 | 25.2 | Plus |
| crol-PA | 962 | CG14938-PA | 215..613 | 181..592 | 434 | 25.2 | Plus |
| crol-PI | 962 | CG14938-PI | 389..725 | 187..528 | 397 | 28.7 | Plus |
| crol-PE | 962 | CG14938-PE | 389..725 | 187..528 | 397 | 28.7 | Plus |
| crol-PA | 962 | CG14938-PA | 389..725 | 187..528 | 397 | 28.7 | Plus |
| crol-PI | 962 | CG14938-PI | 417..727 | 187..503 | 355 | 27.5 | Plus |
| crol-PE | 962 | CG14938-PE | 417..727 | 187..503 | 355 | 27.5 | Plus |
| crol-PA | 962 | CG14938-PA | 417..727 | 187..503 | 355 | 27.5 | Plus |
