Clone BS01246 Report

Search the DGRC for BS01246

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:12
Well:46
Vector:pDNR-Dual
Associated Gene/Transcriptey-RB
Protein status:BS01246.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01246.3prime Sequence

810 bp (774 high quality bases) assembled on 2005-11-29

> BS01246.3prime
ATGGTCTAGAAAGCTTCTAGACCCACGGTGAGTAGAAACAGGAGGCGAAG
AACTGTTGTTTTCCCGGGGCCACGTGTGCTGATGTGCCGCTGGCGGAGGA
AGGCGTCATGGTGTTAGCGGACGACGCGTAATTGTAGCTCATATGTGCAT
ACGAAGATACAGCCGGTGAAATCGGGTCGGACGAAAACCCAGAACTGTGA
GCAACTCCAAAGTGGCTCGCGCTTGAACACGGAGAGGGGCATGATTCTTG
GGCTATGGTGTGATGTGGGGTCACATTAGCGCTGGCACTGGACGCGGCTG
AGAAGCTTGAATCAGCAGCAGAGCTCGACGCCATAGGGGGCGGTGGCAAC
GCGTAGGCAGATAGCACTTCGTATCCCGATCCGCTGCAGCTTGCTCCCAA
ATTCGCAGATTGGCCACTGCCTAGGCCAACGCCCGCAGGTCTGCCACCGT
CACCCGGCACGATGTGATGGTGAGCGGGAGCCATCGGAGGGGGTCGTAGG
GTCATGTGGCACGGATATAACGAGGAAGGGGTAAGATCGCCCTGTTGCGG
TATTGGCGATGGCGGAGCCAGCGGACCGACAGCTGAGTGGTTAAAGCTCG
GAATCGGCGTAACCGCCCCATATGAATCGCTCATGGATAACGCCGTATGA
TGCATGTTGGAGTACATCGCGCCGAAACTACCACTATTAAAATTGAGTCG
TGGCGAAATGGCAGGAACAAGTGCATGACCTTGGGCGTGACCATTGCTCT
GGATATGATGAGTATTTTGATGCCCGCCAACGCCAAGTGGGCATGGAGAA
CAAACTCTTC

BS01246.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1464-PB 1875 ey-RB 1082..1875 810..17 3970 100 Minus
CG1464-PA 2517 ey-RA 1724..2517 810..17 3970 100 Minus
CG1464-PC 2574 ey-RC 1781..2574 810..17 3970 100 Minus
CG1464-PD 2697 ey-RD 1904..2697 810..17 3970 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
ey-RD 3462 CG1464-RD 2418..3211 810..17 3970 100 Minus
ey-RC 2902 CG1464-RC 1858..2651 810..17 3970 100 Minus
ey-RA 3282 CG1464-RA 2238..3031 810..17 3970 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 720321..720922 618..17 3010 100 Minus
4 1348131 4 719436..719629 810..617 970 100 Minus
Blast to na_te.dros performed 2015-02-12 00:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-element 4789 Doc2-element DOC2 4789bp 2369..2472 637..533 117 58.1 Minus

BS01246.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:39 Download gff for BS01246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1464-PB 1082..1875 17..810 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:47 Download gff for BS01246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1464-PD 1904..2697 17..810 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:06:00 Download gff for BS01246.3prime
Subject Subject Range Query Range Percent Splice Strand
ey-RA 2238..3031 17..810 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:49 Download gff for BS01246.3prime
Subject Subject Range Query Range Percent Splice Strand
ey-RA 2238..3031 17..810 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:49 Download gff for BS01246.3prime
Subject Subject Range Query Range Percent Splice Strand
4 719436..719628 618..810 100 -> Minus
4 720322..720922 17..617 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:06:00 Download gff for BS01246.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 740062..740254 618..810 100 -> Minus
arm_4 740948..741548 17..617 100   Minus

BS01246.5prime Sequence

802 bp (801 high quality bases) assembled on 2005-11-29

> BS01246.5prime
GAAGTTATCAGTCGACATGCAGACAGCCACTCCTCTTAACTCTTCGGAAA
GCGGTGGCGCAAGCAACTCCGGGGAGGGTAGTGAACAGGAGGCGATTTAC
GAGAAGCTTCGGCTGTTAAATACTCAGCACGCTGCAGGACCAGGACCACT
GGAGCCTGCCAGAGCAGCGCCCTTGGTAGGTCAATCACCCAACCACCTAG
GAACCCGATCCAGCCACCCCCAGCTGGTGCACGGTAACCATCAGGCACTA
CAGCAGCATCAACAGCAGAGCTGGCCGCCCCGTCACTATTCCGGATCTTG
GTACCCCACCTCTCTTAGCGAAATACCCATCTCATCGGCTCCCAATATCG
CATCCGTTACGGCGTATGCATCAGGACCTTCACTTGCTCACTCACTGAGT
CCACCCAACGACATCGAAAGCCTGGCCAGTATCGGTCACCAGAGAAACTG
CCCCGTTGCAACGGAGGACATACATTTAAAAAAAGAACTTGATGGTCATC
AGTCCGATGAAACGGGCTCCGGTGAAGGTGAAAACTCCAATGGTGGCGCT
TCAAATATAGGAAACACTGAGGATGATCAAGCTCGGCTCATACTAAAAAG
AAAGTTGCAACGCAATCGAACATCTTTCACGAACGACCAGATAGACAGTC
TTGAAAAAGAGTTTGAACGAACACACTATCCAGATGTTTTTGCCCGCGAA
CGTTTGGCTGGAAAGATTGGGTTGCCAGAGGCAAGAATTCAGGTTTGGTT
CTCAAACCGTCGAGCAAAATGGCGTCGCGAGGAGAAGCTGCGAAACCAGC
GA

BS01246.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1464-PB 1875 ey-RB 1..786 17..802 3930 100 Plus
CG1464-PA 2517 ey-RA 643..1428 17..802 3930 100 Plus
CG1464-PC 2574 ey-RC 700..1485 17..802 3930 100 Plus
CG1464-PD 2697 ey-RD 823..1608 17..802 3930 100 Plus
CG11186-PA 1632 toy-RA 832..881 644..693 150 92 Plus
CG11186-PA 1632 toy-RA 904..962 716..774 145 89.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
ey-RD 3462 CG1464-RD 1337..2122 17..802 3930 100 Plus
ey-RC 2902 CG1464-RC 777..1562 17..802 3930 100 Plus
ey-RA 3282 CG1464-RA 1157..1942 17..802 3930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 714044..714512 17..485 2345 100 Plus
4 1348131 4 717125..717300 484..659 880 100 Plus
4 1348131 4 717652..717796 658..802 725 100 Plus
4 1348131 4 998621..998710 658..747 210 82.2 Plus
Blast to na_te.dros performed on 2015-02-10 23:13:22 has no hits.

BS01246.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:40 Download gff for BS01246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1464-PB 1..785 17..801 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:48 Download gff for BS01246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1464-PD 819..1607 12..801 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:17:46 Download gff for BS01246.5prime
Subject Subject Range Query Range Percent Splice Strand
ey-RA 1153..1941 12..801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:27:21 Download gff for BS01246.5prime
Subject Subject Range Query Range Percent Splice Strand
ey-RA 1153..1941 12..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:27:21 Download gff for BS01246.5prime
Subject Subject Range Query Range Percent Splice Strand
4 714040..714512 12..485 99 -> Plus
4 717127..717300 486..659 100 -> Plus
4 717654..717795 660..801 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:17:46 Download gff for BS01246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 734666..735138 12..485 99 -> Plus
arm_4 737753..737926 486..659 100 -> Plus
arm_4 738280..738421 660..801 100   Plus

BS01246.complete Sequence

1907 bp (1907 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634573

> BS01246.complete
GAAGTTATCAGTCGACATGCAGACAGCCACTCCTCTTAACTCTTCGGAAA
GCGGTGGCGCAAGCAACTCCGGGGAGGGTAGTGAACAGGAGGCGATTTAC
GAGAAGCTTCGGCTGTTAAATACTCAGCACGCTGCAGGACCAGGACCACT
GGAGCCTGCCAGAGCAGCGCCCTTGGTAGGTCAATCACCCAACCACCTAG
GAACCCGATCCAGCCACCCCCAGCTGGTGCACGGTAACCATCAGGCACTA
CAGCAGCATCAACAGCAGAGCTGGCCGCCCCGTCACTATTCCGGATCTTG
GTACCCCACCTCTCTTAGCGAAATACCCATCTCATCGGCTCCCAATATCG
CATCCGTTACGGCGTATGCATCAGGACCTTCACTTGCTCACTCACTGAGT
CCACCCAACGACATCGAAAGCCTGGCCAGTATCGGTCACCAGAGAAACTG
CCCCGTTGCAACGGAGGACATACATTTAAAAAAAGAACTTGATGGTCATC
AGTCCGATGAAACGGGCTCCGGTGAAGGTGAAAACTCCAATGGTGGCGCT
TCAAATATAGGAAACACTGAGGATGATCAAGCTCGGCTCATACTAAAAAG
AAAGTTGCAACGCAATCGAACATCTTTCACGAACGACCAGATAGACAGTC
TTGAAAAAGAGTTTGAACGAACACACTATCCAGATGTTTTTGCCCGCGAA
CGTTTGGCTGGAAAGATTGGGTTGCCAGAGGCAAGAATTCAGGTTTGGTT
CTCAAACCGTCGAGCAAAATGGCGTCGCGAGGAGAAGCTGCGAAACCAGC
GAAGAACACCAAATTCCACAGGAGCTAGTGCAACTTCTTCCTCTACATCG
GCAACCGCCTCTTTGACTGACAGCCCTAACAGCCTAAGTGCTTGTTCCTC
GCTGCTGTCCGGATCAGCTGGGGGTCCCTCAGTCAGTACCATTAATGGCT
TATCGTCTCCAAGCACATTGTCTACTAATGTCAATGCTCCAACGCTTGGC
GCTGGGATCGATAGCTCTGAAAGCCCAACACCAATCCCGCACATTCGGCC
TAGCTGCACCTCTGACAATGACAATGGTCGTCAAAGTGAAGATTGCAGAA
GAGTTTGTTCTCCATGCCCACTTGGCGTTGGCGGGCATCAAAATACTCAT
CATATCCAGAGCAATGGTCACGCCCAAGGTCATGCACTTGTTCCTGCCAT
TTCGCCACGACTCAATTTTAATAGTGGTAGTTTCGGCGCGATGTACTCCA
ACATGCATCATACGGCGTTATCCATGAGCGATTCATATGGGGCGGTTACG
CCGATTCCGAGCTTTAACCACTCAGCTGTCGGTCCGCTGGCTCCGCCATC
GCCAATACCGCAACAGGGCGATCTTACCCCTTCCTCGTTATATCCGTGCC
ACATGACCCTACGACCCCCTCCGATGGCTCCCGCTCACCATCACATCGTG
CCGGGTGACGGTGGCAGACCTGCGGGCGTTGGCCTAGGCAGTGGCCAATC
TGCGAATTTGGGAGCAAGCTGCAGCGGATCGGGATACGAAGTGCTATCTG
CCTACGCGTTGCCACCGCCCCCTATGGCGTCGAGCTCTGCTGCTGATTCA
AGCTTCTCAGCCGCGTCCAGTGCCAGCGCTAATGTGACCCCACATCACAC
CATAGCCCAAGAATCATGCCCCTCTCCGTGTTCAAGCGCGAGCCACTTTG
GAGTTGCTCACAGTTCTGGGTTTTCGTCCGACCCGATTTCACCGGCTGTA
TCTTCGTATGCACATATGAGCTACAATTACGCGTCGTCCGCTAACACCAT
GACGCCTTCCTCCGCCAGCGGCACATCAGCACACGTGGCCCCGGGAAAAC
AACAGTTCTTCGCCTCCTGTTTCTACTCACCGTGGGTCTAGAAGCTTTCT
AGACCAT

BS01246.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
ey-RD 2697 CG1464-PD 823..2697 17..1891 9375 100 Plus
ey-RC 2574 CG1464-PC 700..2574 17..1891 9375 100 Plus
ey-RA 2517 CG1464-PA 643..2517 17..1891 9375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
ey-RD 3462 CG1464-RD 1337..3211 17..1891 9375 100 Plus
ey-RC 2902 CG1464-RC 777..2651 17..1891 9375 100 Plus
ey-RA 3282 CG1464-RA 1157..3031 17..1891 9375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 720321..720922 1290..1891 3010 100 Plus
4 1348131 4 714044..714512 17..485 2345 100 Plus
4 1348131 4 719274..719629 936..1291 1780 100 Plus
4 1348131 4 717652..717932 658..938 1405 100 Plus
4 1348131 4 717125..717300 484..659 880 100 Plus
4 1348131 4 998621..998710 658..747 210 82.2 Plus
Blast to na_te.dros performed 2014-11-28 00:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-element 4789 Doc2-element DOC2 4789bp 2369..2472 1271..1375 117 58.1 Plus

BS01246.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:30:14 Download gff for BS01246.complete
Subject Subject Range Query Range Percent Splice Strand
ey-RC 696..2574 12..1891 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:13:54 Download gff for BS01246.complete
Subject Subject Range Query Range Percent Splice Strand
ey-RC 773..2651 12..1891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:33 Download gff for BS01246.complete
Subject Subject Range Query Range Percent Splice Strand
ey-RA 1157..3031 17..1891 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:30:14 Download gff for BS01246.complete
Subject Subject Range Query Range Percent Splice Strand
ey-RC 773..2651 12..1891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:21 Download gff for BS01246.complete
Subject Subject Range Query Range Percent Splice Strand
ey-RA 1157..3031 17..1891 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:21 Download gff for BS01246.complete
Subject Subject Range Query Range Percent Splice Strand
4 719274..719628 936..1290 100 -> Plus
4 714044..714512 17..485 100 -> Plus
4 717127..717300 486..659 100 -> Plus
4 717654..717929 660..935 100 -> Plus
4 720322..720922 1291..1891 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:33 Download gff for BS01246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 734670..735138 17..485 100 -> Plus
arm_4 737753..737926 486..659 100 -> Plus
arm_4 738280..738555 660..935 100 -> Plus
arm_4 739900..740254 936..1290 100 -> Plus
arm_4 740948..741548 1291..1891 100   Plus

BS01246.pep Sequence

Translation from 16 to 1890

> BS01246.pep
MQTATPLNSSESGGASNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARA
APLVGQSPNHLGTRSSHPQLVHGNHQALQQHQQQSWPPRHYSGSWYPTSL
SEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRNCPVATE
DIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRN
RTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRA
KWRREEKLRNQRRTPNSTGASATSSSTSATASLTDSPNSLSACSSLLSGS
AGGPSVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIPHIRPSCTSD
NDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGHAQGHALVPAISPRLN
FNSGSFGAMYSNMHHTALSMSDSYGAVTPIPSFNHSAVGPLAPPSPIPQQ
GDLTPSSLYPCHMTLRPPPMAPAHHHIVPGDGGRPAGVGLGSGQSANLGA
SCSGSGYEVLSAYALPPPPMASSSAADSSFSAASSASANVTPHHTIAQES
CPSPCSSASHFGVAHSSGFSSDPISPAVSSYAHMSYNYASSANTMTPSSA
SGTSAHVAPGKQQFFASCFYSPWV*

BS01246.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
ey-PD 898 CG1464-PD 275..898 1..624 3295 100 Plus
ey-PC 857 CG1464-PC 234..857 1..624 3295 100 Plus
ey-PA 838 CG1464-PA 215..838 1..624 3295 100 Plus
ey-PB 624 CG1464-PB 1..624 1..624 3295 100 Plus
toy-PA 543 CG11186-PA 162..481 76..475 460 36.1 Plus