Clone Sequence Records
BS01246.3prime Sequence
810 bp (774 high quality bases) assembled on 2005-11-29
> BS01246.3prime
ATGGTCTAGAAAGCTTCTAGACCCACGGTGAGTAGAAACAGGAGGCGAAG
AACTGTTGTTTTCCCGGGGCCACGTGTGCTGATGTGCCGCTGGCGGAGGA
AGGCGTCATGGTGTTAGCGGACGACGCGTAATTGTAGCTCATATGTGCAT
ACGAAGATACAGCCGGTGAAATCGGGTCGGACGAAAACCCAGAACTGTGA
GCAACTCCAAAGTGGCTCGCGCTTGAACACGGAGAGGGGCATGATTCTTG
GGCTATGGTGTGATGTGGGGTCACATTAGCGCTGGCACTGGACGCGGCTG
AGAAGCTTGAATCAGCAGCAGAGCTCGACGCCATAGGGGGCGGTGGCAAC
GCGTAGGCAGATAGCACTTCGTATCCCGATCCGCTGCAGCTTGCTCCCAA
ATTCGCAGATTGGCCACTGCCTAGGCCAACGCCCGCAGGTCTGCCACCGT
CACCCGGCACGATGTGATGGTGAGCGGGAGCCATCGGAGGGGGTCGTAGG
GTCATGTGGCACGGATATAACGAGGAAGGGGTAAGATCGCCCTGTTGCGG
TATTGGCGATGGCGGAGCCAGCGGACCGACAGCTGAGTGGTTAAAGCTCG
GAATCGGCGTAACCGCCCCATATGAATCGCTCATGGATAACGCCGTATGA
TGCATGTTGGAGTACATCGCGCCGAAACTACCACTATTAAAATTGAGTCG
TGGCGAAATGGCAGGAACAAGTGCATGACCTTGGGCGTGACCATTGCTCT
GGATATGATGAGTATTTTGATGCCCGCCAACGCCAAGTGGGCATGGAGAA
CAAACTCTTC
BS01246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1464-PB | 1875 | ey-RB | 1082..1875 | 810..17 | 3970 | 100 | Minus |
CG1464-PA | 2517 | ey-RA | 1724..2517 | 810..17 | 3970 | 100 | Minus |
CG1464-PC | 2574 | ey-RC | 1781..2574 | 810..17 | 3970 | 100 | Minus |
CG1464-PD | 2697 | ey-RD | 1904..2697 | 810..17 | 3970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ey-RD | 3462 | CG1464-RD | 2418..3211 | 810..17 | 3970 | 100 | Minus |
ey-RC | 2902 | CG1464-RC | 1858..2651 | 810..17 | 3970 | 100 | Minus |
ey-RA | 3282 | CG1464-RA | 2238..3031 | 810..17 | 3970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 720321..720922 | 618..17 | 3010 | 100 | Minus |
4 | 1348131 | 4 | 719436..719629 | 810..617 | 970 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 00:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc2-element | 4789 | Doc2-element DOC2 4789bp | 2369..2472 | 637..533 | 117 | 58.1 | Minus |
BS01246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:39 Download gff for
BS01246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1464-PB | 1082..1875 | 17..810 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:47 Download gff for
BS01246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1464-PD | 1904..2697 | 17..810 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:06:00 Download gff for
BS01246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ey-RA | 2238..3031 | 17..810 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:49 Download gff for
BS01246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ey-RA | 2238..3031 | 17..810 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:49 Download gff for
BS01246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 719436..719628 | 618..810 | 100 | -> | Minus |
4 | 720322..720922 | 17..617 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:06:00 Download gff for
BS01246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 740062..740254 | 618..810 | 100 | -> | Minus |
arm_4 | 740948..741548 | 17..617 | 100 | | Minus |
BS01246.5prime Sequence
802 bp (801 high quality bases) assembled on 2005-11-29
> BS01246.5prime
GAAGTTATCAGTCGACATGCAGACAGCCACTCCTCTTAACTCTTCGGAAA
GCGGTGGCGCAAGCAACTCCGGGGAGGGTAGTGAACAGGAGGCGATTTAC
GAGAAGCTTCGGCTGTTAAATACTCAGCACGCTGCAGGACCAGGACCACT
GGAGCCTGCCAGAGCAGCGCCCTTGGTAGGTCAATCACCCAACCACCTAG
GAACCCGATCCAGCCACCCCCAGCTGGTGCACGGTAACCATCAGGCACTA
CAGCAGCATCAACAGCAGAGCTGGCCGCCCCGTCACTATTCCGGATCTTG
GTACCCCACCTCTCTTAGCGAAATACCCATCTCATCGGCTCCCAATATCG
CATCCGTTACGGCGTATGCATCAGGACCTTCACTTGCTCACTCACTGAGT
CCACCCAACGACATCGAAAGCCTGGCCAGTATCGGTCACCAGAGAAACTG
CCCCGTTGCAACGGAGGACATACATTTAAAAAAAGAACTTGATGGTCATC
AGTCCGATGAAACGGGCTCCGGTGAAGGTGAAAACTCCAATGGTGGCGCT
TCAAATATAGGAAACACTGAGGATGATCAAGCTCGGCTCATACTAAAAAG
AAAGTTGCAACGCAATCGAACATCTTTCACGAACGACCAGATAGACAGTC
TTGAAAAAGAGTTTGAACGAACACACTATCCAGATGTTTTTGCCCGCGAA
CGTTTGGCTGGAAAGATTGGGTTGCCAGAGGCAAGAATTCAGGTTTGGTT
CTCAAACCGTCGAGCAAAATGGCGTCGCGAGGAGAAGCTGCGAAACCAGC
GA
BS01246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1464-PB | 1875 | ey-RB | 1..786 | 17..802 | 3930 | 100 | Plus |
CG1464-PA | 2517 | ey-RA | 643..1428 | 17..802 | 3930 | 100 | Plus |
CG1464-PC | 2574 | ey-RC | 700..1485 | 17..802 | 3930 | 100 | Plus |
CG1464-PD | 2697 | ey-RD | 823..1608 | 17..802 | 3930 | 100 | Plus |
CG11186-PA | 1632 | toy-RA | 832..881 | 644..693 | 150 | 92 | Plus |
CG11186-PA | 1632 | toy-RA | 904..962 | 716..774 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ey-RD | 3462 | CG1464-RD | 1337..2122 | 17..802 | 3930 | 100 | Plus |
ey-RC | 2902 | CG1464-RC | 777..1562 | 17..802 | 3930 | 100 | Plus |
ey-RA | 3282 | CG1464-RA | 1157..1942 | 17..802 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 714044..714512 | 17..485 | 2345 | 100 | Plus |
4 | 1348131 | 4 | 717125..717300 | 484..659 | 880 | 100 | Plus |
4 | 1348131 | 4 | 717652..717796 | 658..802 | 725 | 100 | Plus |
4 | 1348131 | 4 | 998621..998710 | 658..747 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:13:22 has no hits.
BS01246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:40 Download gff for
BS01246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1464-PB | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:48 Download gff for
BS01246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1464-PD | 819..1607 | 12..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:17:46 Download gff for
BS01246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ey-RA | 1153..1941 | 12..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:27:21 Download gff for
BS01246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ey-RA | 1153..1941 | 12..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:27:21 Download gff for
BS01246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 714040..714512 | 12..485 | 99 | -> | Plus |
4 | 717127..717300 | 486..659 | 100 | -> | Plus |
4 | 717654..717795 | 660..801 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:17:46 Download gff for
BS01246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 734666..735138 | 12..485 | 99 | -> | Plus |
arm_4 | 737753..737926 | 486..659 | 100 | -> | Plus |
arm_4 | 738280..738421 | 660..801 | 100 | | Plus |
BS01246.complete Sequence
1907 bp (1907 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634573
> BS01246.complete
GAAGTTATCAGTCGACATGCAGACAGCCACTCCTCTTAACTCTTCGGAAA
GCGGTGGCGCAAGCAACTCCGGGGAGGGTAGTGAACAGGAGGCGATTTAC
GAGAAGCTTCGGCTGTTAAATACTCAGCACGCTGCAGGACCAGGACCACT
GGAGCCTGCCAGAGCAGCGCCCTTGGTAGGTCAATCACCCAACCACCTAG
GAACCCGATCCAGCCACCCCCAGCTGGTGCACGGTAACCATCAGGCACTA
CAGCAGCATCAACAGCAGAGCTGGCCGCCCCGTCACTATTCCGGATCTTG
GTACCCCACCTCTCTTAGCGAAATACCCATCTCATCGGCTCCCAATATCG
CATCCGTTACGGCGTATGCATCAGGACCTTCACTTGCTCACTCACTGAGT
CCACCCAACGACATCGAAAGCCTGGCCAGTATCGGTCACCAGAGAAACTG
CCCCGTTGCAACGGAGGACATACATTTAAAAAAAGAACTTGATGGTCATC
AGTCCGATGAAACGGGCTCCGGTGAAGGTGAAAACTCCAATGGTGGCGCT
TCAAATATAGGAAACACTGAGGATGATCAAGCTCGGCTCATACTAAAAAG
AAAGTTGCAACGCAATCGAACATCTTTCACGAACGACCAGATAGACAGTC
TTGAAAAAGAGTTTGAACGAACACACTATCCAGATGTTTTTGCCCGCGAA
CGTTTGGCTGGAAAGATTGGGTTGCCAGAGGCAAGAATTCAGGTTTGGTT
CTCAAACCGTCGAGCAAAATGGCGTCGCGAGGAGAAGCTGCGAAACCAGC
GAAGAACACCAAATTCCACAGGAGCTAGTGCAACTTCTTCCTCTACATCG
GCAACCGCCTCTTTGACTGACAGCCCTAACAGCCTAAGTGCTTGTTCCTC
GCTGCTGTCCGGATCAGCTGGGGGTCCCTCAGTCAGTACCATTAATGGCT
TATCGTCTCCAAGCACATTGTCTACTAATGTCAATGCTCCAACGCTTGGC
GCTGGGATCGATAGCTCTGAAAGCCCAACACCAATCCCGCACATTCGGCC
TAGCTGCACCTCTGACAATGACAATGGTCGTCAAAGTGAAGATTGCAGAA
GAGTTTGTTCTCCATGCCCACTTGGCGTTGGCGGGCATCAAAATACTCAT
CATATCCAGAGCAATGGTCACGCCCAAGGTCATGCACTTGTTCCTGCCAT
TTCGCCACGACTCAATTTTAATAGTGGTAGTTTCGGCGCGATGTACTCCA
ACATGCATCATACGGCGTTATCCATGAGCGATTCATATGGGGCGGTTACG
CCGATTCCGAGCTTTAACCACTCAGCTGTCGGTCCGCTGGCTCCGCCATC
GCCAATACCGCAACAGGGCGATCTTACCCCTTCCTCGTTATATCCGTGCC
ACATGACCCTACGACCCCCTCCGATGGCTCCCGCTCACCATCACATCGTG
CCGGGTGACGGTGGCAGACCTGCGGGCGTTGGCCTAGGCAGTGGCCAATC
TGCGAATTTGGGAGCAAGCTGCAGCGGATCGGGATACGAAGTGCTATCTG
CCTACGCGTTGCCACCGCCCCCTATGGCGTCGAGCTCTGCTGCTGATTCA
AGCTTCTCAGCCGCGTCCAGTGCCAGCGCTAATGTGACCCCACATCACAC
CATAGCCCAAGAATCATGCCCCTCTCCGTGTTCAAGCGCGAGCCACTTTG
GAGTTGCTCACAGTTCTGGGTTTTCGTCCGACCCGATTTCACCGGCTGTA
TCTTCGTATGCACATATGAGCTACAATTACGCGTCGTCCGCTAACACCAT
GACGCCTTCCTCCGCCAGCGGCACATCAGCACACGTGGCCCCGGGAAAAC
AACAGTTCTTCGCCTCCTGTTTCTACTCACCGTGGGTCTAGAAGCTTTCT
AGACCAT
BS01246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ey-RD | 2697 | CG1464-PD | 823..2697 | 17..1891 | 9375 | 100 | Plus |
ey-RC | 2574 | CG1464-PC | 700..2574 | 17..1891 | 9375 | 100 | Plus |
ey-RA | 2517 | CG1464-PA | 643..2517 | 17..1891 | 9375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ey-RD | 3462 | CG1464-RD | 1337..3211 | 17..1891 | 9375 | 100 | Plus |
ey-RC | 2902 | CG1464-RC | 777..2651 | 17..1891 | 9375 | 100 | Plus |
ey-RA | 3282 | CG1464-RA | 1157..3031 | 17..1891 | 9375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 720321..720922 | 1290..1891 | 3010 | 100 | Plus |
4 | 1348131 | 4 | 714044..714512 | 17..485 | 2345 | 100 | Plus |
4 | 1348131 | 4 | 719274..719629 | 936..1291 | 1780 | 100 | Plus |
4 | 1348131 | 4 | 717652..717932 | 658..938 | 1405 | 100 | Plus |
4 | 1348131 | 4 | 717125..717300 | 484..659 | 880 | 100 | Plus |
4 | 1348131 | 4 | 998621..998710 | 658..747 | 210 | 82.2 | Plus |
Blast to na_te.dros performed 2014-11-28 00:53:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc2-element | 4789 | Doc2-element DOC2 4789bp | 2369..2472 | 1271..1375 | 117 | 58.1 | Plus |
BS01246.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:30:14 Download gff for
BS01246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ey-RC | 696..2574 | 12..1891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:13:54 Download gff for
BS01246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ey-RC | 773..2651 | 12..1891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:33 Download gff for
BS01246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ey-RA | 1157..3031 | 17..1891 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:30:14 Download gff for
BS01246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ey-RC | 773..2651 | 12..1891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:21 Download gff for
BS01246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ey-RA | 1157..3031 | 17..1891 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:21 Download gff for
BS01246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 719274..719628 | 936..1290 | 100 | -> | Plus |
4 | 714044..714512 | 17..485 | 100 | -> | Plus |
4 | 717127..717300 | 486..659 | 100 | -> | Plus |
4 | 717654..717929 | 660..935 | 100 | -> | Plus |
4 | 720322..720922 | 1291..1891 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:33 Download gff for
BS01246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 734670..735138 | 17..485 | 100 | -> | Plus |
arm_4 | 737753..737926 | 486..659 | 100 | -> | Plus |
arm_4 | 738280..738555 | 660..935 | 100 | -> | Plus |
arm_4 | 739900..740254 | 936..1290 | 100 | -> | Plus |
arm_4 | 740948..741548 | 1291..1891 | 100 | | Plus |
BS01246.pep Sequence
Translation from 16 to 1890
> BS01246.pep
MQTATPLNSSESGGASNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARA
APLVGQSPNHLGTRSSHPQLVHGNHQALQQHQQQSWPPRHYSGSWYPTSL
SEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRNCPVATE
DIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRN
RTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRA
KWRREEKLRNQRRTPNSTGASATSSSTSATASLTDSPNSLSACSSLLSGS
AGGPSVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIPHIRPSCTSD
NDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGHAQGHALVPAISPRLN
FNSGSFGAMYSNMHHTALSMSDSYGAVTPIPSFNHSAVGPLAPPSPIPQQ
GDLTPSSLYPCHMTLRPPPMAPAHHHIVPGDGGRPAGVGLGSGQSANLGA
SCSGSGYEVLSAYALPPPPMASSSAADSSFSAASSASANVTPHHTIAQES
CPSPCSSASHFGVAHSSGFSSDPISPAVSSYAHMSYNYASSANTMTPSSA
SGTSAHVAPGKQQFFASCFYSPWV*
BS01246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ey-PD | 898 | CG1464-PD | 275..898 | 1..624 | 3295 | 100 | Plus |
ey-PC | 857 | CG1464-PC | 234..857 | 1..624 | 3295 | 100 | Plus |
ey-PA | 838 | CG1464-PA | 215..838 | 1..624 | 3295 | 100 | Plus |
ey-PB | 624 | CG1464-PB | 1..624 | 1..624 | 3295 | 100 | Plus |
toy-PA | 543 | CG11186-PA | 162..481 | 76..475 | 460 | 36.1 | Plus |