Clone BS01248 Report

Search the DGRC for BS01248

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:12
Well:48
Vector:pDNR-Dual
Associated Gene/Transcriptsip3-RA
Protein status:BS01248.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01248.3prime Sequence

879 bp (821 high quality bases) assembled on 2005-11-29

> BS01248.3prime
ATGGTCTAGAAAGCTTCTATTCCGCTGTCGTGCGTTCATTAGTGGCTGCA
GACTTGTTCCGCTCTTCAAGGAACTTCAAACGGCGCTTCCTTAGTTCGCC
CAGCTCCGAGGAGTTCTCCTCAAAGTCGGCATCGGAGTTGGGAATGCTAA
CTGCCTCCGTGGCCGTCGATGGTATATCATCCTCGTCTGCGTCCGCTCCC
AAATCCTCAATGGTTACCTTCTCTGCAGGCATCGTCGGAGACGCTGAGCT
GGCTGCTGCTGTGGGGGTAACCTGGTGAGTCTCCAACTGAGCCATGGCCG
TGGCCGAGGTACTGGGCATGTCGTAGACGCTAGAATCAGCAGATCCGTTG
ACCGCGGTGGCTGGCGTCACTGCAGTAAGCTGCAGGCGCGCAGACAAACT
TTGGTACTGGGACATCATTATCCCCGCGGAATCCAGCATTAGGTTTATGT
TTTGCAGCAACTTTAGACGCTGCACAATATGATCACGTTGAAGGCCCTCC
ATGGCCCGCAGTTCTTCGTCGGTAAAATTGGTCAGGTCCTGTGGAATCGG
CGGAGGCGGCAGAGGCGTGAGGTAGCCGAAGTGGGGTGGTATCATAAAAG
GCGAAATCATGGGCATTACTGGCGGAGGAGGGATCTGCAAACCAGCCAGG
TTAGGCAATCCATTGGGCAAGCCGCTGGCATCACCGAAGAGATCCGCAAA
GTTTGGCGGCAAGGCTTGACCTCCGGCTACATTGACGTCGGCTCTTGCCT
GATTGCCGTCAACTACGGCAGTTGGAGCTGGAGGAGGCACACCACCAGCC
GGTTGAACACCTGCTGCAGCCGGAATGGGATTTTCAGCAGCTGCGGCCAC
AGCCTCATCGCCTTGGCGTGGCATCGCTG

BS01248.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1937-PA 1881 sip3-RA 1019..1881 879..17 4265 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
sip3-RB 2660 CG1937-RB 1354..2217 879..16 4290 99.8 Minus
sip3-RA 2280 CG1937-RA 1354..2217 879..16 4290 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31774274..31774720 462..16 2235 100 Minus
3R 32079331 3R 31774005..31774219 675..461 1075 100 Minus
3R 32079331 3R 31773743..31773947 879..675 995 99 Minus
Blast to na_te.dros performed on 2015-01-30 16:49:18 has no hits.

BS01248.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:44 Download gff for BS01248.3prime
Subject Subject Range Query Range Percent Splice Strand
sip3-PA 1019..1881 17..879 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:54 Download gff for BS01248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1937-PA 1019..1881 17..879 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:29:49 Download gff for BS01248.3prime
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 1354..2224 7..879 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:56 Download gff for BS01248.3prime
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 1354..2224 7..879 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:56 Download gff for BS01248.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31773743..31773946 676..879 99 -> Minus
3R 31774005..31774219 461..675 100 -> Minus
3R 31774276..31774727 7..460 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:29:49 Download gff for BS01248.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27599465..27599668 676..879 99 -> Minus
arm_3R 27599727..27599941 461..675 100 -> Minus
arm_3R 27599998..27600449 7..460 99   Minus

BS01248.5prime Sequence

817 bp (778 high quality bases) assembled on 2005-11-29

> BS01248.5prime
GAAGTTATCAGTCGACATGCAGCTGCTCTTATCGTCCGTTTGCATGGCGC
TGACCAGCGCGGTGATTGGATTTGCCTACTACCAAAAGCAGCAGTTCTAT
CCTGCGGTGGTCTACATCACCAAATCGAACGCCTCCATGGGGGTCATATA
CATACAATTCTTTGTAATTGTCTTCATGTTCGGCAAGCTGCTAAGCAAGA
TCTTCCTGGGCACTCTGCGTGCCGCAGAGTTTGAGCATCTGCTGGAGCGC
TTTTGGTATGCCCTTACGGAGACCTGCTTGGCCTTTACCGTATTCCGGGA
TGACTTCAATCCGCGCTTTGTGGCCTTGTTCACGGTGCTTCTATTTCTCA
AATCATTCCATTGGCTAGCAGAGGAGCGGGTGGACTTTATGGAGCGTTCC
CCCGTGCTCGGCTGGCTTTTCCACATTCGCGTGGGCAGTCTGCTCACAGT
GCTAGGCATCCTAGACTACGTTCTGTTGATCCATGCCTATAACTCCACTT
TGGTGCGTGGTCCCACCGTGCAGTTGGTCTTTGGCTTTGAATACGCCATC
CTTCTGACCGTAATAGCCAGCACGGCCATCAAGTATGTGCTTCACGCCGC
GGAAATGCGCACGGACACGCCCTGGGAGAACAAGGCCGTGTTCCTGCTAT
ATACAGAGCTGGTCATTGGACTTATTAAGGTGGTCCTGTACATACTGTTT
GTGGTGATCATGGCTAAAATATACGCGCTGCCCATGTTCGTATTCAGGCC
TATGTTCTTTACCATACGCAACTTCCGTAAGGCCCTAAATGACGTGATTA
TGTCCCGGCGTGCCATT

BS01248.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1937-PA 1881 sip3-RA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
sip3-RB 2660 CG1937-RB 335..1136 16..817 4010 100 Plus
sip3-RA 2280 CG1937-RA 335..1136 16..817 4010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31773097..31773525 389..817 2145 100 Plus
3R 32079331 3R 31772852..31773042 198..388 955 100 Plus
3R 32079331 3R 31772553..31772681 16..144 645 100 Plus
3R 32079331 3R 31772741..31772798 142..199 290 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:12:34 has no hits.

BS01248.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:45 Download gff for BS01248.5prime
Subject Subject Range Query Range Percent Splice Strand
sip3-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:56 Download gff for BS01248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1937-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:42:51 Download gff for BS01248.5prime
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 335..1136 16..817 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:21 Download gff for BS01248.5prime
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 335..1136 16..817 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:21 Download gff for BS01248.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31772553..31772679 16..142 100 -> Plus
3R 31772742..31772798 143..199 100 -> Plus
3R 31772854..31773042 200..388 100 -> Plus
3R 31773097..31773525 389..817 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:42:51 Download gff for BS01248.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27598275..27598401 16..142 100 -> Plus
arm_3R 27598464..27598520 143..199 100 -> Plus
arm_3R 27598576..27598764 200..388 100 -> Plus
arm_3R 27598819..27599247 389..817 100   Plus

BS01248.complete Sequence

1913 bp (1913 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ634574

> BS01248.complete
GAAGTTATCAGTCGACATGCAGCTGCTCTTATCGTCCGTTTGCATGGCGC
TGACCAGCGCGGTGATTGGATTTGCCTACTACCAAAAGCAGCAGTTCTAT
CCTGCGGTGGTCTACATCACCAAATCGAACGCCTCCATGGGGGTCATATA
CATACAATTCTTTGTAATTGTCTTCATGTTCGGCAAGCTGCTAAGCAAGA
TCTTCCTGGGCACTCTGCGTGCCGCAGAGTTTGAGCATCTGCTGGAGCGC
TTTTGGTATGCCCTTACGGAGACCTGCTTGGCCTTTACCGTATTCCGGGA
TGACTTCAATCCGCGCTTTGTGGCCTTGTTCACGGTGCTTCTATTTCTCA
AATCATTCCATTGGCTAGCAGAGGAGCGGGTGGACTTTATGGAGCGTTCC
CCCGTGCTCGGCTGGCTTTTCCACATTCGCGTGGGCAGTCTGCTCACAGT
GCTAGGCATCCTAGACTACGTTCTGTTGATCCATGCCTATAACTCCACTT
TGGTGCGTGGTCCCACCGTGCAGTTGGTCTTTGGCTTTGAATACGCCATC
CTTCTGACCGTAATAGCCAGCACGGCCATCAAGTATGTGCTTCACGCCGC
GGAAATGCGCACGGACACGCCCTGGGAGAACAAGGCCGTGTTCCTGCTAT
ATACAGAGCTGGTCATTGGACTTATTAAGGTGGTCCTGTACATACTGTTT
GTGGTGATCATGGCTAAAATATACGCGCTGCCCATGTTCGTATTCAGGCC
TATGTTCTTTACCATACGCAACTTCCGTAAGGCCCTAAATGACGTGATTA
TGTCCCGGCGTGCCATTCGCAACATGAATACCCTGTATCCCGACGCCACG
CCTGAGGAGCTGCGCCAGTCAGACAACATCTGCATCATTTGTCGCGAGGA
CATGGTCAATCACTCAAAGAAACTGCCCTGCGGCCACATCTTCCATACCA
CATGCCTGCGCTCGTGGTTTCAGCGCCAGCAGACCTGTCCAACCTGCCGT
TTGAACATCCTTCGAACTCCAACCGTGAACTCCACAGCGATGCCACGGCA
AGGCGATGAGGCTGTGGCCGCAGCTGCTGGAAATCCCATTCCGGCTGCAG
CAGGTGTTCAACCGGCTGGTGGTGTGCCTCCTCCAGCTCCAACTGCCGTA
GTTGACGGCAATCAGGCAAGAGCCGACGTCAATGTAGCCGGAGGTCAAGC
CTTGCCGCCAAACTTTGCGGATCTCTTCGGTGATGCCAGCGGCTTGCCCA
ATGGATTGCCTAACCTGGCTGGTTTGCAGATCCCTCCTCCGCCAGTAATG
CCCATGATTTCGCCTTTTATGATACCACCCCACTTCGGCTACCTCACGCC
TCTGCCGCCTCCGCCGATTCCACAGGACCTGACCAATTTTACCGACGAAG
AACTGCGGGCCATGGAGGGCCTTCAACGTGATCATATTGTGCAGCGTCTA
AAGTTGCTGCAAAACATAAACCTAATGCTGGATTCCGCGGGGATAATGAT
GTCCCAGTACCAAAGTTTGTCTGCGCGCCTGCAGCTTACTGCAGTGACGC
CAGCCACCGCGGTCAACGGATCTGCTGATTCTAGCGTCTACGACATGCCC
AGTACCTCGGCCACGGCCATGGCTCAGTTGGAGACTCACCAGGTTACCCC
CACAGCAGCAGCCAGCTCAGCGTCTCCGACGATGCCTGCAGAGAAGGTAA
CCATTGAGGATTTGGGAGCGGACGCAGACGAGGATGATATACCATCGACG
GCCACGGAGGCAGTTAGCATTCCCAACTCCGATGCCGACTTTGAGGAGAA
CTCCTCGGAGCTGGGCGAACTAAGGAAGCGCCGTTTGAAGTTCCTTGAAG
AGCGGAACAAGTCTGCAGCCACTAATGAACGCACGACAGCGGAATAGAAG
CTTTCTAGACCAT

BS01248.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
sip3-RB 1881 CG1937-PB 1..1881 17..1897 9405 100 Plus
sip3-RA 1881 CG1937-PA 1..1881 17..1897 9405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
sip3-RB 2660 CG1937-RB 335..2217 16..1898 9415 100 Plus
sip3-RA 2280 CG1937-RA 335..2217 16..1898 9415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31773097..31773947 389..1239 4255 100 Plus
3R 32079331 3R 31774274..31774720 1452..1898 2235 100 Plus
3R 32079331 3R 31774005..31774219 1239..1453 1075 100 Plus
3R 32079331 3R 31772852..31773042 198..388 955 100 Plus
3R 32079331 3R 31772553..31772681 16..144 645 100 Plus
3R 32079331 3R 31772741..31772798 142..199 290 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:26:15 has no hits.

BS01248.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:23 Download gff for BS01248.complete
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 1..1881 17..1897 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:33 Download gff for BS01248.complete
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 338..2227 16..1907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:26 Download gff for BS01248.complete
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 336..2216 17..1897 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:23 Download gff for BS01248.complete
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 338..2227 16..1907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:49 Download gff for BS01248.complete
Subject Subject Range Query Range Percent Splice Strand
sip3-RA 336..2216 17..1897 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:49 Download gff for BS01248.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31774005..31774219 1239..1453 100 -> Plus
3R 31772742..31772798 143..199 100 -> Plus
3R 31772854..31773042 200..388 100 -> Plus
3R 31773097..31773946 389..1238 100 -> Plus
3R 31772554..31772679 17..142 100 -> Plus
3R 31774276..31774719 1454..1897 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:26 Download gff for BS01248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27598276..27598401 17..142 100 -> Plus
arm_3R 27598464..27598520 143..199 100 -> Plus
arm_3R 27598576..27598764 200..388 100 -> Plus
arm_3R 27598819..27599668 389..1238 100 -> Plus
arm_3R 27599727..27599941 1239..1453 100 -> Plus
arm_3R 27599998..27600441 1454..1897 100   Plus

BS01248.pep Sequence

Translation from 16 to 1896

> BS01248.pep
MQLLLSSVCMALTSAVIGFAYYQKQQFYPAVVYITKSNASMGVIYIQFFV
IVFMFGKLLSKIFLGTLRAAEFEHLLERFWYALTETCLAFTVFRDDFNPR
FVALFTVLLFLKSFHWLAEERVDFMERSPVLGWLFHIRVGSLLTVLGILD
YVLLIHAYNSTLVRGPTVQLVFGFEYAILLTVIASTAIKYVLHAAEMRTD
TPWENKAVFLLYTELVIGLIKVVLYILFVVIMAKIYALPMFVFRPMFFTI
RNFRKALNDVIMSRRAIRNMNTLYPDATPEELRQSDNICIICREDMVNHS
KKLPCGHIFHTTCLRSWFQRQQTCPTCRLNILRTPTVNSTAMPRQGDEAV
AAAAGNPIPAAAGVQPAGGVPPPAPTAVVDGNQARADVNVAGGQALPPNF
ADLFGDASGLPNGLPNLAGLQIPPPPVMPMISPFMIPPHFGYLTPLPPPP
IPQDLTNFTDEELRAMEGLQRDHIVQRLKLLQNINLMLDSAGIMMSQYQS
LSARLQLTAVTPATAVNGSADSSVYDMPSTSATAMAQLETHQVTPTAAAS
SASPTMPAEKVTIEDLGADADEDDIPSTATEAVSIPNSDADFEENSSELG
ELRKRRLKFLEERNKSAATNERTTAE*

BS01248.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
sip3-PB 626 CG1937-PB 1..626 1..626 3216 100 Plus
sip3-PA 626 CG1937-PA 1..626 1..626 3216 100 Plus
Trc8-PE 804 CG2304-PE 458..777 136..425 210 24.8 Plus
Trc8-PA 804 CG2304-PA 458..777 136..425 210 24.8 Plus
Trc8-PB 804 CG2304-PB 458..777 136..425 210 24.8 Plus