Clone BS01250 Report

Search the DGRC for BS01250

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:12
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG9426-RA
Protein status:BS01250.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01250.3prime Sequence

836 bp (780 high quality bases) assembled on 2005-11-29

> BS01250.3prime
ATGGTCTAGAAAGCTTCTAAACAACCACTGCTCCTGCCTCCGAACGGCTA
ACTGGTAGATCGGGACAATTCTTCCAGGTGTCCGAAAGCGGATCATAACA
TTCGACAGCATTGATAGTCACTTGGGCTCGGTAGAAGTTTACCTCGCAGG
GCTGATCACCGCCAGCTACGTAGAGCAAGCCATCGGCGGCGACCACGGCA
GGAATGGCTCTGGGCACGTTTAATGCACACACTGTAGTCCACTTATCCTC
GTCGAAGCTGTAGCGTTCCACGGAGCTGAGAATGTCCTGACTGATGCTAC
TGCCTCCAACCACATACAAGTAGCGATCCAGAACGGCCACACCCATTTGA
CAGCGAGCTGTTTGCATGCGGGCCAGCTCGTTCCACTCTTTTGTCACTGG
ATTGAAGCTGATTAAATCCGGCAGATGACGGGTTGTTGTTGTGCAGCCAC
CGACAATGTAAATGAGACCCTCGAAACTGACCACACCCATGCTGAATCTA
GGCTGCGGCATGCTGCCCATTAATTTCCAGAGATCCTGCTCCGGATCATA
GCACTCCATGGAGCCGCCGATGTCGTCGCCTATCCAACCGCCTACGGCAA
ACAGATTTCCGCCCATGGTGCAAAGACCGAACTCGCAGCGCGGCACAATC
ATCGGGGCAATCGGTTGCCAAACATCGTTCTGTGGATCATAGACCTCGCC
ATTGGCCAGAATCTGTGAACCGCGCTCTCCTCCTACCACATAGATCTTGC
CATTCAATGCTGATACACCTGGCAGGATGCGTCCCACCTCCATAGGCGCC
GTTTCCGTCCACTCGCGCCGGAATATATCGAATTTT

BS01250.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9426-PA 1884 CG9426-RA 1066..1884 835..17 4095 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9426-RA 3184 CG9426-RA 1497..2315 835..17 4095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13217676..13218103 408..835 2140 100 Plus
2L 23513712 2L 13217361..13217619 152..410 1295 100 Plus
2L 23513712 2L 13217159..13217296 17..154 690 100 Plus
Blast to na_te.dros performed on 2015-02-06 15:52:38 has no hits.

BS01250.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:46 Download gff for BS01250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9426-PA 1065..1884 17..836 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:57 Download gff for BS01250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9426-PA 1065..1884 17..836 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:17:41 Download gff for BS01250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9426-RA 1496..2320 12..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:03:18 Download gff for BS01250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9426-RA 1496..2320 12..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:03:18 Download gff for BS01250.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13217154..13217293 12..151 98 <- Plus
2L 13217361..13217616 152..407 100 <- Plus
2L 13217676..13218103 408..836 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:17:41 Download gff for BS01250.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13217154..13217293 12..151 98 <- Plus
arm_2L 13217361..13217616 152..407 100 <- Plus
arm_2L 13217676..13218103 408..836 99   Plus

BS01250.5prime Sequence

852 bp (756 high quality bases) assembled on 2005-11-29

> BS01250.5prime
GAAGTTATCAGTCGACATGCCACCGTTGAAAACATACCAGATACACGAAT
ACAATGGCAATACCAGTCCGAATGCGAATGCCAATCAGAACGCCAATCAG
AATCCCACCGGCGGCGGCGGCGACGGTGACTTCTTTGGCCAAAATCTGGG
ATCTGGAGCCACAGCGGCCAGCCATCGCACAAACCTGCCCTCCTACTGCA
ACGCCCAATATCCGTTCAAGGTGCTTTCCAATCTCAACCAACTGCGCGAG
CAGTCCCGTTTCTGCGACGTGGAGATCATCGCCGGAATGGCAACATTGAG
TGCCCACCGGGCTGTCCTGAGTGCAGCCAGTGCCTACTTCGAGGCCATGT
TTCGACCCGAGCTCGGGTTAAATGAGGTCAAGCAAAAATCCGTTGTGCTG
CACACAATCGACGGCGATATCCTGCACATCCTGCTTGACTTCATCTATAC
GGGTCGCTGCGAAATCACCCAGTCCAATGTCCAGGAGCTCCTGGCCGCCG
CCGACATGCTGCAGCTAAACGAGGTGGTCGACGGGTGCTGCGAGTTCCTC
TGCCGCGAGCTGCACGCCTCCAATGCCCTGGGCATTTTACGCTTCGCCGA
GGCCCACAACTGCGAGTCGTTGGCCAAGAGTGCACTGAACTTTGTCCACG
CGAATTTCCCAGCGGTAACGCTTGAAGATGAGTTCCTAGAAACGCCACAA
ACTCTACTCTCGCAGCTACTGAACTCGGAGCTGCTGCGTGTAGACTCCGA
GTCGCAGGTGTTCCAGGCGGCGCTTCGTTGGATTAAGCACGACGTGACGC
AGCGCCGCTGCTACGTCTTCGATGTCCTGTCCCACGTGCGCATGGCGCTT
GT

BS01250.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9426-PA 1884 CG9426-RA 1..836 17..852 4180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9426-RA 3184 CG9426-RA 428..1267 13..852 4185 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13219037..13219496 472..13 2285 99.8 Minus
2L 23513712 2L 13218783..13218979 666..470 985 100 Minus
2L 23513712 2L 13218333..13218521 852..664 945 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:46:37 has no hits.

BS01250.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:47 Download gff for BS01250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9426-PA 1..836 17..852 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:58 Download gff for BS01250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9426-PA 1..836 17..852 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:21 Download gff for BS01250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9426-RA 428..1267 13..852 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:21:37 Download gff for BS01250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9426-RA 428..1267 13..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:21:37 Download gff for BS01250.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13218333..13218520 665..852 100 <- Minus
2L 13218785..13218976 473..664 100 <- Minus
2L 13219037..13219496 13..472 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:21 Download gff for BS01250.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13218333..13218520 665..852 100 <- Minus
arm_2L 13218785..13218976 473..664 100 <- Minus
arm_2L 13219037..13219496 13..472 99   Minus

BS01250.complete Sequence

1916 bp (1916 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ634575

> BS01250.complete
GAAGTTATCAGTCGACATGCCACCGTTGAAAACATACCAGATACACGAAT
ACAATGGCAATACCAGTCCGAATGCGAATGCCAATCAGAACGCCAATCAG
AATCCCACCGGCGGCGGCGGCGACGGTGACTTCTTTGGCCAAAATCTGGG
ATCTGGAGCCACAGCGGCCAGCCATCGCACAAACCTGCCCTCCTACTGCA
ACGCCCAATATCCGTTCAAGGTGCTTTCCAATCTCAACCAACTGCGCGAG
CAGTCCCGTTTCTGCGACGTGGAGATCATCGCCGGAATGGCAACATTGAG
TGCCCACCGGGCTGTCCTGAGTGCAGCCAGTGCCTACTTCGAGGCCATGT
TTCGACCCGAGCTCGGGTTAAATGAGGTCAAGCAAAAATCCGTTGTGCTG
CACACAATCGACGGCGATATCCTGCACATCCTGCTTGACTTCATCTATAC
GGGTCGCTGCGAAATCACCCAGTCCAATGTCCAGGAGCTCCTGGCCGCCG
CCGACATGCTGCAGCTAAACGAGGTGGTCGACGGGTGCTGCGAGTTCCTC
TGCCGCGAGCTGCACGCCTCCAATGCCCTGGGCATTTTACGCTTCGCCGA
GGCCCACAACTGCGAGTCGTTGGCCAAGAGTGCACTGAACTTTGTCCACG
CGAATTTCCCAGCGGTAACGCTTGAAGATGAGTTCCTAGAAACGCCACAA
ACTCTACTCTCGCAGCTACTGAACTCGGAGCTGCTGCGTGTAGACTCCGA
GTCGCAGGTGTTCCAGGCGGCGCTTCGTTGGATTAAGCACGACGTGACGC
AGCGCCGCTGCTACGTCTTCGATGTCCTGTCCCACGTGCGCATGGCGCTT
GTTCCGGTAAAGGTGATCGACAAGGCTCTGAAGGACGACTGTCGCGACAT
GTCCGTGAAGATAGCCCTGCGCTCCATTTGCCGGGACATTGCGTCCAAGC
GCGGACAATTGGTGCCGCTGCGGGTATGTCCGCGTCAGCTGGCCAAGAAG
AACATATATATCATTGGTGGATCTCATCGGGATACGCCGCGAACCTGGAA
CTCGGCCGACTGCATCTTCGAGACGGTGGCCAAATTCGATATATTCCGGC
GCGAGTGGACGGAAACGGCGCCTATGGAGGTGGGACGCATCCTGCCAGGT
GTATCAGCATTGAATGGCAAGATCTATGTGGTAGGAGGAGAGCGCGGTTC
ACAGATTCTGGCCAATGGCGAGGTCTATGATCCACAGAACGATGTTTGGC
AACCGATTGCCCCGATGATTGTGCCGCGCTGCGAGTTCGGTCTTTGCACC
ATGGGCGGAAATCTGTTTGCCGTAGGCGGTTGGATAGGCGACGACATCGG
CGGCTCCATGGAGTGCTATGATCCGGAGCAGGATCTCTGGAAATTAATGG
GCAGCATGCCGCAGCCTAGATTCAGCATGGGTGTGGTCAGTTTCGAGGGT
CTCATTTACATTGTCGGTGGCTGCACAACAACAACCCGTCATCTGCCGGA
TTTAATCAGCTTCAATCCAGTGACAAAAGAGTGGAACGAGCTGGCCCGCA
TGCAAACAGCTCGCTGTCAAATGGGTGTGGCCGTTCTGGATCGCTACTTG
TATGTGGTTGGAGGCAGTAGCATCAGTCAGGACATTCTCAGCTCCGTGGA
ACGCTACAGCTTCGACGAGGATAAGTGGACTACAGTGTGTGCATTAAACG
TGCCCAGAGCCATTCCTGCCGTGGTCGCCGCCGATGGCTTGCTCTACGTA
GCTGGCGGTGATCAGCCCTGCGAGGTAAACTTCTACCGAGCCCAAGTGAC
TATCAATGCTGTCGAATGTTATGATCCGCTTTCGGACACCTGGAAGAATT
GTCCCGATCTACCAGTTAGCCGTTCGGAGGCAGGAGCAGTGGTTGTTTAG
AAGCTTTCTAGACCAT

BS01250.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9426-RA 1884 CG9426-PA 1..1884 17..1900 9420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9426-RA 3184 CG9426-RA 428..2315 13..1900 9425 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13217676..13218521 1509..664 4230 100 Minus
2L 23513712 2L 13219037..13219496 472..13 2285 99.8 Minus
2L 23513712 2L 13217361..13217619 1765..1507 1295 100 Minus
2L 23513712 2L 13218783..13218979 666..470 985 100 Minus
2L 23513712 2L 13217159..13217296 1900..1763 690 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:19:23 has no hits.

BS01250.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:24 Download gff for BS01250.complete
Subject Subject Range Query Range Percent Splice Strand
CG9426-RA 1..1884 17..1900 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:34 Download gff for BS01250.complete
Subject Subject Range Query Range Percent Splice Strand
CG9426-RA 438..2330 13..1905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:16 Download gff for BS01250.complete
Subject Subject Range Query Range Percent Splice Strand
CG9426-RA 432..2315 17..1900 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:24 Download gff for BS01250.complete
Subject Subject Range Query Range Percent Splice Strand
CG9426-RA 438..2330 13..1905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:52 Download gff for BS01250.complete
Subject Subject Range Query Range Percent Splice Strand
CG9426-RA 432..2315 17..1900 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:52 Download gff for BS01250.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13217159..13217293 1766..1900 100 <- Minus
2L 13217361..13217616 1510..1765 100 <- Minus
2L 13217676..13218520 665..1509 100 <- Minus
2L 13218785..13218976 473..664 100 <- Minus
2L 13219037..13219492 17..472 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:16 Download gff for BS01250.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13217361..13217616 1510..1765 100 <- Minus
arm_2L 13217159..13217293 1766..1900 100 <- Minus
arm_2L 13217676..13218520 665..1509 100 <- Minus
arm_2L 13218785..13218976 473..664 100 <- Minus
arm_2L 13219037..13219492 17..472 100   Minus

BS01250.pep Sequence

Translation from 16 to 1899

> BS01250.pep
MPPLKTYQIHEYNGNTSPNANANQNANQNPTGGGGDGDFFGQNLGSGATA
ASHRTNLPSYCNAQYPFKVLSNLNQLREQSRFCDVEIIAGMATLSAHRAV
LSAASAYFEAMFRPELGLNEVKQKSVVLHTIDGDILHILLDFIYTGRCEI
TQSNVQELLAAADMLQLNEVVDGCCEFLCRELHASNALGILRFAEAHNCE
SLAKSALNFVHANFPAVTLEDEFLETPQTLLSQLLNSELLRVDSESQVFQ
AALRWIKHDVTQRRCYVFDVLSHVRMALVPVKVIDKALKDDCRDMSVKIA
LRSICRDIASKRGQLVPLRVCPRQLAKKNIYIIGGSHRDTPRTWNSADCI
FETVAKFDIFRREWTETAPMEVGRILPGVSALNGKIYVVGGERGSQILAN
GEVYDPQNDVWQPIAPMIVPRCEFGLCTMGGNLFAVGGWIGDDIGGSMEC
YDPEQDLWKLMGSMPQPRFSMGVVSFEGLIYIVGGCTTTTRHLPDLISFN
PVTKEWNELARMQTARCQMGVAVLDRYLYVVGGSSISQDILSSVERYSFD
EDKWTTVCALNVPRAIPAVVAADGLLYVAGGDQPCEVNFYRAQVTINAVE
CYDPLSDTWKNCPDLPVSRSEAGAVVV*

BS01250.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9426-PA 627 CG9426-PA 1..627 1..627 3305 100 Plus
kel-PA 689 CG7210-PA 128..685 54..627 795 33 Plus
kel-PB 1477 CG7210-PB 128..685 54..627 795 33 Plus
dbo-PB 620 CG6224-PB 7..603 13..627 782 32.8 Plus
dbo-PA 623 CG6224-PA 7..603 13..627 782 32.8 Plus