Clone Sequence Records
BS01250.3prime Sequence
836 bp (780 high quality bases) assembled on 2005-11-29
> BS01250.3prime
ATGGTCTAGAAAGCTTCTAAACAACCACTGCTCCTGCCTCCGAACGGCTA
ACTGGTAGATCGGGACAATTCTTCCAGGTGTCCGAAAGCGGATCATAACA
TTCGACAGCATTGATAGTCACTTGGGCTCGGTAGAAGTTTACCTCGCAGG
GCTGATCACCGCCAGCTACGTAGAGCAAGCCATCGGCGGCGACCACGGCA
GGAATGGCTCTGGGCACGTTTAATGCACACACTGTAGTCCACTTATCCTC
GTCGAAGCTGTAGCGTTCCACGGAGCTGAGAATGTCCTGACTGATGCTAC
TGCCTCCAACCACATACAAGTAGCGATCCAGAACGGCCACACCCATTTGA
CAGCGAGCTGTTTGCATGCGGGCCAGCTCGTTCCACTCTTTTGTCACTGG
ATTGAAGCTGATTAAATCCGGCAGATGACGGGTTGTTGTTGTGCAGCCAC
CGACAATGTAAATGAGACCCTCGAAACTGACCACACCCATGCTGAATCTA
GGCTGCGGCATGCTGCCCATTAATTTCCAGAGATCCTGCTCCGGATCATA
GCACTCCATGGAGCCGCCGATGTCGTCGCCTATCCAACCGCCTACGGCAA
ACAGATTTCCGCCCATGGTGCAAAGACCGAACTCGCAGCGCGGCACAATC
ATCGGGGCAATCGGTTGCCAAACATCGTTCTGTGGATCATAGACCTCGCC
ATTGGCCAGAATCTGTGAACCGCGCTCTCCTCCTACCACATAGATCTTGC
CATTCAATGCTGATACACCTGGCAGGATGCGTCCCACCTCCATAGGCGCC
GTTTCCGTCCACTCGCGCCGGAATATATCGAATTTT
BS01250.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9426-PA | 1884 | CG9426-RA | 1066..1884 | 835..17 | 4095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:52:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9426-RA | 3184 | CG9426-RA | 1497..2315 | 835..17 | 4095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13217676..13218103 | 408..835 | 2140 | 100 | Plus |
2L | 23513712 | 2L | 13217361..13217619 | 152..410 | 1295 | 100 | Plus |
2L | 23513712 | 2L | 13217159..13217296 | 17..154 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 15:52:38 has no hits.
BS01250.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:46 Download gff for
BS01250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-PA | 1065..1884 | 17..836 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:57 Download gff for
BS01250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-PA | 1065..1884 | 17..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:17:41 Download gff for
BS01250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-RA | 1496..2320 | 12..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:03:18 Download gff for
BS01250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-RA | 1496..2320 | 12..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:03:18 Download gff for
BS01250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13217154..13217293 | 12..151 | 98 | <- | Plus |
2L | 13217361..13217616 | 152..407 | 100 | <- | Plus |
2L | 13217676..13218103 | 408..836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:17:41 Download gff for
BS01250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13217154..13217293 | 12..151 | 98 | <- | Plus |
arm_2L | 13217361..13217616 | 152..407 | 100 | <- | Plus |
arm_2L | 13217676..13218103 | 408..836 | 99 | | Plus |
BS01250.5prime Sequence
852 bp (756 high quality bases) assembled on 2005-11-29
> BS01250.5prime
GAAGTTATCAGTCGACATGCCACCGTTGAAAACATACCAGATACACGAAT
ACAATGGCAATACCAGTCCGAATGCGAATGCCAATCAGAACGCCAATCAG
AATCCCACCGGCGGCGGCGGCGACGGTGACTTCTTTGGCCAAAATCTGGG
ATCTGGAGCCACAGCGGCCAGCCATCGCACAAACCTGCCCTCCTACTGCA
ACGCCCAATATCCGTTCAAGGTGCTTTCCAATCTCAACCAACTGCGCGAG
CAGTCCCGTTTCTGCGACGTGGAGATCATCGCCGGAATGGCAACATTGAG
TGCCCACCGGGCTGTCCTGAGTGCAGCCAGTGCCTACTTCGAGGCCATGT
TTCGACCCGAGCTCGGGTTAAATGAGGTCAAGCAAAAATCCGTTGTGCTG
CACACAATCGACGGCGATATCCTGCACATCCTGCTTGACTTCATCTATAC
GGGTCGCTGCGAAATCACCCAGTCCAATGTCCAGGAGCTCCTGGCCGCCG
CCGACATGCTGCAGCTAAACGAGGTGGTCGACGGGTGCTGCGAGTTCCTC
TGCCGCGAGCTGCACGCCTCCAATGCCCTGGGCATTTTACGCTTCGCCGA
GGCCCACAACTGCGAGTCGTTGGCCAAGAGTGCACTGAACTTTGTCCACG
CGAATTTCCCAGCGGTAACGCTTGAAGATGAGTTCCTAGAAACGCCACAA
ACTCTACTCTCGCAGCTACTGAACTCGGAGCTGCTGCGTGTAGACTCCGA
GTCGCAGGTGTTCCAGGCGGCGCTTCGTTGGATTAAGCACGACGTGACGC
AGCGCCGCTGCTACGTCTTCGATGTCCTGTCCCACGTGCGCATGGCGCTT
GT
BS01250.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9426-PA | 1884 | CG9426-RA | 1..836 | 17..852 | 4180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9426-RA | 3184 | CG9426-RA | 428..1267 | 13..852 | 4185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13219037..13219496 | 472..13 | 2285 | 99.8 | Minus |
2L | 23513712 | 2L | 13218783..13218979 | 666..470 | 985 | 100 | Minus |
2L | 23513712 | 2L | 13218333..13218521 | 852..664 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:46:37 has no hits.
BS01250.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:47 Download gff for
BS01250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-PA | 1..836 | 17..852 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:12:58 Download gff for
BS01250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-PA | 1..836 | 17..852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:21 Download gff for
BS01250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-RA | 428..1267 | 13..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:21:37 Download gff for
BS01250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-RA | 428..1267 | 13..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:21:37 Download gff for
BS01250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13218333..13218520 | 665..852 | 100 | <- | Minus |
2L | 13218785..13218976 | 473..664 | 100 | <- | Minus |
2L | 13219037..13219496 | 13..472 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:21 Download gff for
BS01250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13218333..13218520 | 665..852 | 100 | <- | Minus |
arm_2L | 13218785..13218976 | 473..664 | 100 | <- | Minus |
arm_2L | 13219037..13219496 | 13..472 | 99 | | Minus |
BS01250.complete Sequence
1916 bp (1916 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634575
> BS01250.complete
GAAGTTATCAGTCGACATGCCACCGTTGAAAACATACCAGATACACGAAT
ACAATGGCAATACCAGTCCGAATGCGAATGCCAATCAGAACGCCAATCAG
AATCCCACCGGCGGCGGCGGCGACGGTGACTTCTTTGGCCAAAATCTGGG
ATCTGGAGCCACAGCGGCCAGCCATCGCACAAACCTGCCCTCCTACTGCA
ACGCCCAATATCCGTTCAAGGTGCTTTCCAATCTCAACCAACTGCGCGAG
CAGTCCCGTTTCTGCGACGTGGAGATCATCGCCGGAATGGCAACATTGAG
TGCCCACCGGGCTGTCCTGAGTGCAGCCAGTGCCTACTTCGAGGCCATGT
TTCGACCCGAGCTCGGGTTAAATGAGGTCAAGCAAAAATCCGTTGTGCTG
CACACAATCGACGGCGATATCCTGCACATCCTGCTTGACTTCATCTATAC
GGGTCGCTGCGAAATCACCCAGTCCAATGTCCAGGAGCTCCTGGCCGCCG
CCGACATGCTGCAGCTAAACGAGGTGGTCGACGGGTGCTGCGAGTTCCTC
TGCCGCGAGCTGCACGCCTCCAATGCCCTGGGCATTTTACGCTTCGCCGA
GGCCCACAACTGCGAGTCGTTGGCCAAGAGTGCACTGAACTTTGTCCACG
CGAATTTCCCAGCGGTAACGCTTGAAGATGAGTTCCTAGAAACGCCACAA
ACTCTACTCTCGCAGCTACTGAACTCGGAGCTGCTGCGTGTAGACTCCGA
GTCGCAGGTGTTCCAGGCGGCGCTTCGTTGGATTAAGCACGACGTGACGC
AGCGCCGCTGCTACGTCTTCGATGTCCTGTCCCACGTGCGCATGGCGCTT
GTTCCGGTAAAGGTGATCGACAAGGCTCTGAAGGACGACTGTCGCGACAT
GTCCGTGAAGATAGCCCTGCGCTCCATTTGCCGGGACATTGCGTCCAAGC
GCGGACAATTGGTGCCGCTGCGGGTATGTCCGCGTCAGCTGGCCAAGAAG
AACATATATATCATTGGTGGATCTCATCGGGATACGCCGCGAACCTGGAA
CTCGGCCGACTGCATCTTCGAGACGGTGGCCAAATTCGATATATTCCGGC
GCGAGTGGACGGAAACGGCGCCTATGGAGGTGGGACGCATCCTGCCAGGT
GTATCAGCATTGAATGGCAAGATCTATGTGGTAGGAGGAGAGCGCGGTTC
ACAGATTCTGGCCAATGGCGAGGTCTATGATCCACAGAACGATGTTTGGC
AACCGATTGCCCCGATGATTGTGCCGCGCTGCGAGTTCGGTCTTTGCACC
ATGGGCGGAAATCTGTTTGCCGTAGGCGGTTGGATAGGCGACGACATCGG
CGGCTCCATGGAGTGCTATGATCCGGAGCAGGATCTCTGGAAATTAATGG
GCAGCATGCCGCAGCCTAGATTCAGCATGGGTGTGGTCAGTTTCGAGGGT
CTCATTTACATTGTCGGTGGCTGCACAACAACAACCCGTCATCTGCCGGA
TTTAATCAGCTTCAATCCAGTGACAAAAGAGTGGAACGAGCTGGCCCGCA
TGCAAACAGCTCGCTGTCAAATGGGTGTGGCCGTTCTGGATCGCTACTTG
TATGTGGTTGGAGGCAGTAGCATCAGTCAGGACATTCTCAGCTCCGTGGA
ACGCTACAGCTTCGACGAGGATAAGTGGACTACAGTGTGTGCATTAAACG
TGCCCAGAGCCATTCCTGCCGTGGTCGCCGCCGATGGCTTGCTCTACGTA
GCTGGCGGTGATCAGCCCTGCGAGGTAAACTTCTACCGAGCCCAAGTGAC
TATCAATGCTGTCGAATGTTATGATCCGCTTTCGGACACCTGGAAGAATT
GTCCCGATCTACCAGTTAGCCGTTCGGAGGCAGGAGCAGTGGTTGTTTAG
AAGCTTTCTAGACCAT
BS01250.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9426-RA | 1884 | CG9426-PA | 1..1884 | 17..1900 | 9420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9426-RA | 3184 | CG9426-RA | 428..2315 | 13..1900 | 9425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13217676..13218521 | 1509..664 | 4230 | 100 | Minus |
2L | 23513712 | 2L | 13219037..13219496 | 472..13 | 2285 | 99.8 | Minus |
2L | 23513712 | 2L | 13217361..13217619 | 1765..1507 | 1295 | 100 | Minus |
2L | 23513712 | 2L | 13218783..13218979 | 666..470 | 985 | 100 | Minus |
2L | 23513712 | 2L | 13217159..13217296 | 1900..1763 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:19:23 has no hits.
BS01250.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:24 Download gff for
BS01250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-RA | 1..1884 | 17..1900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:34 Download gff for
BS01250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-RA | 438..2330 | 13..1905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:16 Download gff for
BS01250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-RA | 432..2315 | 17..1900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:24 Download gff for
BS01250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-RA | 438..2330 | 13..1905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:52 Download gff for
BS01250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-RA | 432..2315 | 17..1900 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:52 Download gff for
BS01250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13217159..13217293 | 1766..1900 | 100 | <- | Minus |
2L | 13217361..13217616 | 1510..1765 | 100 | <- | Minus |
2L | 13217676..13218520 | 665..1509 | 100 | <- | Minus |
2L | 13218785..13218976 | 473..664 | 100 | <- | Minus |
2L | 13219037..13219492 | 17..472 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:16 Download gff for
BS01250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13217361..13217616 | 1510..1765 | 100 | <- | Minus |
arm_2L | 13217159..13217293 | 1766..1900 | 100 | <- | Minus |
arm_2L | 13217676..13218520 | 665..1509 | 100 | <- | Minus |
arm_2L | 13218785..13218976 | 473..664 | 100 | <- | Minus |
arm_2L | 13219037..13219492 | 17..472 | 100 | | Minus |
BS01250.pep Sequence
Translation from 16 to 1899
> BS01250.pep
MPPLKTYQIHEYNGNTSPNANANQNANQNPTGGGGDGDFFGQNLGSGATA
ASHRTNLPSYCNAQYPFKVLSNLNQLREQSRFCDVEIIAGMATLSAHRAV
LSAASAYFEAMFRPELGLNEVKQKSVVLHTIDGDILHILLDFIYTGRCEI
TQSNVQELLAAADMLQLNEVVDGCCEFLCRELHASNALGILRFAEAHNCE
SLAKSALNFVHANFPAVTLEDEFLETPQTLLSQLLNSELLRVDSESQVFQ
AALRWIKHDVTQRRCYVFDVLSHVRMALVPVKVIDKALKDDCRDMSVKIA
LRSICRDIASKRGQLVPLRVCPRQLAKKNIYIIGGSHRDTPRTWNSADCI
FETVAKFDIFRREWTETAPMEVGRILPGVSALNGKIYVVGGERGSQILAN
GEVYDPQNDVWQPIAPMIVPRCEFGLCTMGGNLFAVGGWIGDDIGGSMEC
YDPEQDLWKLMGSMPQPRFSMGVVSFEGLIYIVGGCTTTTRHLPDLISFN
PVTKEWNELARMQTARCQMGVAVLDRYLYVVGGSSISQDILSSVERYSFD
EDKWTTVCALNVPRAIPAVVAADGLLYVAGGDQPCEVNFYRAQVTINAVE
CYDPLSDTWKNCPDLPVSRSEAGAVVV*
BS01250.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9426-PA | 627 | CG9426-PA | 1..627 | 1..627 | 3305 | 100 | Plus |
kel-PA | 689 | CG7210-PA | 128..685 | 54..627 | 795 | 33 | Plus |
kel-PB | 1477 | CG7210-PB | 128..685 | 54..627 | 795 | 33 | Plus |
dbo-PB | 620 | CG6224-PB | 7..603 | 13..627 | 782 | 32.8 | Plus |
dbo-PA | 623 | CG6224-PA | 7..603 | 13..627 | 782 | 32.8 | Plus |