Clone Sequence Records
BS01251.3prime Sequence
811 bp (807 high quality bases) assembled on 2005-11-29
> BS01251.3prime
ATGGTCTAGAAAGCTTTTATAGCATAAGCGCAGACTCGGTCATCTCGTTA
AGTTCCTCTTCAAGGGCCCCGCTTCCGTTTTCCTTGTTGCTTAGAAATGT
GAAGTGCACCAGGCGTTTGTCGTGCTGCTCGTGGCCGGCCAGATGTGATC
GCATCTCGGGCATCGACTTGAACTCCTCATTGCACACCGGACAAATGTAG
ATCCGCTCGCCCTGATGTGTACGCTGGTGCATCTGGCAGTCACCCCGCTG
CGTAAAGGTCTTCGAGCAGAAGGGACAGACGTACGGCCGCTCACCTGTGT
GCGTCCTTCGGTGGTTCTTTAGCACATTGAGGGCAGTGAATCTCATGGGG
CAGAGATCGCAGGCGTATGGCCGTTCGCCAGTGTGCTTTCGTTTGTGCTT
GGCCAGGGAGCAACTAGTGGTGAATCTGGCCAAGCACACCTCACACTCGA
AGGGCTTGTCGCCGGTGTGGGTGCGTGCATGAGAGGTGAGTTCCGCCTTG
GTAACAAACGAGTGCGGGCACAGCTCGCACTTGAAACTCTTTGTCTCCGA
GTGACGCAGCTTGTGCTGGCGCAGATTGGCATTCTGTGTAAAGCTCTTGC
CACAGATATTGCACACAAAGGGTTTCTCGCCGGTGTGGATGCGCATGTGG
TCACGCAGCGTGGACAGCATGGTGAATACTTTCTGACAGATATTGCACTG
ATTCCGCAGATTCCGCTTGTGGCCCTGCACCATGTGCTTGCTAAGTGCCT
CCTTGGAATCACAGCGTATTCCACACTCCGGGCAATTGTGGGGCACATGA
CTGGCCTGGTG
BS01251.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-PA | 1920 | CG6654-RA | 1145..1920 | 792..17 | 3880 | 100 | Minus |
| CG12071-PA | 654 | CG12071-RA | 606..632 | 650..624 | 135 | 100 | Minus |
| CG12071-PB | 1737 | CG12071-RB | 606..632 | 650..624 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-RA | 2262 | CG6654-RA | 1199..1994 | 811..16 | 3935 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15211545..15212209 | 16..680 | 3325 | 100 | Plus |
| 3R | 32079331 | 3R | 15212263..15212395 | 679..811 | 620 | 97.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:41:51 has no hits.
BS01251.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:48 Download gff for
BS01251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-PA | 1126..1920 | 17..811 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:00 Download gff for
BS01251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-PA | 1126..1920 | 17..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:26 Download gff for
BS01251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 1199..1994 | 16..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:09:45 Download gff for
BS01251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 1199..1994 | 16..811 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:09:45 Download gff for
BS01251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15212263..15212395 | 679..811 | 98 | | Plus |
| 3R | 15211545..15212207 | 16..678 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:26 Download gff for
BS01251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11037267..11037929 | 16..678 | 100 | <- | Plus |
| arm_3R | 11037985..11038117 | 679..811 | 98 | | Plus |
BS01251.5prime Sequence
795 bp (702 high quality bases) assembled on 2005-11-29
> BS01251.5prime
GAAGTTATCAGTCGACATGGATGTGGACAAGATCTGTCTTACCTGCCTGA
GTTCCACGGGACCACTCCTGTCCATCTACGACGGCGGATCCGGCAGCTGC
CTGGCGGACATGATCCGGGAGTTCACAAAAACCAAGCCCCGCCGCAACGA
TAATCTGCCCGAGAAGGTGTGCCTAAGCTGTTTGAGTGAAATCTCCAATT
GCTATACCTTCAAGATCAAGTGCGAGAACTCCAGTCGCACCCTGCGCCAA
TTGCTGCCGAATGCGTTGCCGGAGGAGCCCGATAGCAAGGTGTCTATCAG
TTGTCCAGTGGCCACGACGGACCAGGCTGTGCAGACCACTAGCTGGGAGC
CGGACAGATGCACAGCCTCCGTGCAAACGGACGCAGTGACTACCACAGAC
GCCGAACAGAATACCAGCCTGATTAAGTCAACGATTTCAGTGGACCTGGA
CTACGAAGGCGAGGGCGAGGTATTCGATTACGAGCTGCCGGATGAGCCCG
TCGAAAAGACCACCAGCCTCATCCTGCAGGTCCAGGGGAACTTGAAGGAC
GAAAAGGAAGTTGTGTTTACCCAAACCAATGTTATTTACGAAGGCGACGA
CCACGAGCTGGAACAGCAGATCAGGGAATGTAACCTGGCCATCTTCGAAG
GTGTCGATAACGAGGCGGAGATCATCACAGTAACCGCTCCGCAGGTAACC
ACCAGAAAGAGCGCTGCCAAGCTTCTAACGCAGCAGGAAAACGATAAGCA
TCAGACTCCTGTGGGTTCTAAGGAGGAAGCACGCGAATTAGAGAA
BS01251.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-PA | 1920 | CG6654-RA | 1..779 | 17..795 | 3895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-RA | 2262 | CG6654-RA | 70..852 | 13..795 | 3900 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15212742..15213404 | 795..133 | 3315 | 100 | Minus |
| 3R | 32079331 | 3R | 15213466..15213589 | 136..13 | 605 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:44:36 has no hits.
BS01251.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:50 Download gff for
BS01251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:01 Download gff for
BS01251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:52:06 Download gff for
BS01251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 67..852 | 8..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:00 Download gff for
BS01251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 67..852 | 8..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:00 Download gff for
BS01251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15212742..15213400 | 137..795 | 100 | <- | Minus |
| 3R | 15213466..15213592 | 8..136 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:52:06 Download gff for
BS01251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11038464..11039122 | 137..795 | 100 | <- | Minus |
| arm_3R | 11039188..11039314 | 8..136 | 97 | | Minus |
BS01251.complete Sequence
1952 bp (1952 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634576
> BS01251.complete
GAAGTTATCAGTCGACATGGATGTGGACAAGATCTGTCTTACCTGCCTGA
GTTCCACGGGACCACTCCTGTCCATCTACGACGGCGGATCCGGCAGCTGC
CTGGCGGACATGATCCGGGAGTTCACAAAAACCAAGCCCCGCCGCAACGA
TAATCTGCCCGAGAAGGTGTGCCTAAGCTGTTTGAGTGAAATCTCCAATT
GCTATACCTTCAAGATCAAGTGCGAGAACTCCAGTCGCACCCTGCGCCAA
TTGCTGCCGAATGCGTTGCCGGAGGAGCCCGATAGCAAGGTGTCTATCAG
TTGTCCAGTGGCCACGACGGACCAGGCTGTGCAGACCACTAGCTGGGAGC
CGGACAGATGCACAGCCTCCGTGCAAACGGACGCAGTGACTACCACAGAC
GCCGAACAGAATACCAGCCTGATTAAGTCAACGATTTCAGTGGACCTGGA
CTACGAAGGCGAGGGCGAGGTATTCGATTACGAGCTGCCGGATGAGCCCG
TCGAAAAGACCACCAGCCTCATCCTGCAGGTCCAGGGGAACTTGAAGGAC
GAAAAGGAAGTTGTGTTTACCCAAACCAATGTTATTTACGAAGGCGACGA
CCACGAGCTGGAACAGCAGATCAGGGAATGTAACCTGGCCATCTTCGAAG
GTGTCGATAACGAGGCGGAGATCATCACAGTAACCGCTCCGCAGGTAACC
ACCAGAAAGAGCGCTGCCAAGCTTCTAACGCAGCAGGAAAACGATAAGCA
TCAGACTCCTGTGGGTTCTAAGGAGGAAGCACGCGAATTAGAGAAGGAAC
AAGTACCTCAGTCGGCTAAGCGCACCTCACGGCGTCGCGGAGTTGTCAAG
CAGGATGTACCGGCTACACCGCCGTCAGATGCAGAGCCTTCCCCCAAACA
GCATCGGTTAGGAACACAGCGAAAACTCAGCGCGCCAAGAGCGGGAACAG
TAAACGGGCCAAGCACAACGTCAGGAGCAGCTACTACCCCTGAGCTCAAA
TATCACTGTGATCGTTGCAATGCGGGATTCGCGGTGGAGAAATCGTTGAT
GATCCACAGACGCCAAAAGGGCTGCATTAATCGCAACTACAAGTGCAATG
AGTGCGAAAAGGTCTTCGTGTCGCCGGATCACTTGGCGGAACACCAGGCC
AGTCATGGTGCCCACAATTGCCCGGAGTGTGGAATACGCTGTGATTCCAA
GGAGGCACTTAGCAAGCACATGGTGCAGGGCCACAAGCGGAATCTGCGGA
ATCAGTGCAATATCTGTCAGAAAGTATTCACCATGCTGTCCACGCTGCGT
GACCACATGCGCATCCACACCGGCGAGAAACCCTTTGTGTGCAATATCTG
TGGCAAGAGCTTTACACAGAATGCCAATCTGCGCCAGCACAAGCTGCGTC
ACTCGGAGACAAAGAGTTTCAAGTGCGAGCTGTGCCCGCACTCGTTTGTT
ACCAAGGCGGAACTCACCTCTCATGCACGCACCCACACCGGCGACAAGCC
CTTCGAGTGTGAGGTGTGCTTGGCCAGATTCACCACTAGTTGCTCCCTGG
CCAAGCACAAACGAAAGCACACTGGCGAACGGCCATACGCCTGCGATCTC
TGCCCCATGAGATTCACTGCCCTCAATGTGCTAAAGAACCACCGAAGGAC
GCACACAGGTGAGCGGCCGTACGTCTGTCCCTTCTGCTCGAAGACCTTTA
CGCAGCGGGGTGACTGCCAGATGCACCAGCGTACACATCAGGGCGAGCGG
ATCTACATTTGTCCGGTGTGCAATGAGGAGTTCAAGTCGATGCCCGAGAT
GCGATCACATCTGGCCGGCCACGAGCAGCACGACAAACGCCTGGTGCACT
TCACATTTCTAAGCAACAAGGAAAACGGAAGCGGGGCCCTTGAAGAGGAA
CTTAACGAGATGACCGAGTCTGCGCTTATGCTATAAAAGCTTTCTAGACC
AT
BS01251.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-RA | 1920 | CG6654-PA | 1..1920 | 17..1936 | 9600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-RA | 2262 | CG6654-RA | 70..1994 | 13..1937 | 9610 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15212263..15213404 | 1274..133 | 5710 | 100 | Minus |
| 3R | 32079331 | 3R | 15211545..15212209 | 1937..1273 | 3325 | 100 | Minus |
| 3R | 32079331 | 3R | 15213466..15213589 | 136..13 | 605 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:04:57 has no hits.
BS01251.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:25 Download gff for
BS01251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 1..1920 | 17..1936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:36 Download gff for
BS01251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 9..1936 | 8..1937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:08 Download gff for
BS01251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 74..1991 | 17..1934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:26 Download gff for
BS01251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 9..1936 | 8..1937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:08 Download gff for
BS01251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 74..1991 | 17..1934 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:08 Download gff for
BS01251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15211548..15212207 | 1275..1934 | 100 | <- | Minus |
| 3R | 15212263..15213400 | 137..1274 | 100 | <- | Minus |
| 3R | 15213466..15213585 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:08 Download gff for
BS01251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11037270..11037929 | 1275..1934 | 100 | <- | Minus |
| arm_3R | 11037985..11039122 | 137..1274 | 100 | <- | Minus |
| arm_3R | 11039188..11039307 | 17..136 | 100 | | Minus |
BS01251.pep Sequence
Translation from 16 to 1935
> BS01251.pep
MDVDKICLTCLSSTGPLLSIYDGGSGSCLADMIREFTKTKPRRNDNLPEK
VCLSCLSEISNCYTFKIKCENSSRTLRQLLPNALPEEPDSKVSISCPVAT
TDQAVQTTSWEPDRCTASVQTDAVTTTDAEQNTSLIKSTISVDLDYEGEG
EVFDYELPDEPVEKTTSLILQVQGNLKDEKEVVFTQTNVIYEGDDHELEQ
QIRECNLAIFEGVDNEAEIITVTAPQVTTRKSAAKLLTQQENDKHQTPVG
SKEEARELEKEQVPQSAKRTSRRRGVVKQDVPATPPSDAEPSPKQHRLGT
QRKLSAPRAGTVNGPSTTSGAATTPELKYHCDRCNAGFAVEKSLMIHRRQ
KGCINRNYKCNECEKVFVSPDHLAEHQASHGAHNCPECGIRCDSKEALSK
HMVQGHKRNLRNQCNICQKVFTMLSTLRDHMRIHTGEKPFVCNICGKSFT
QNANLRQHKLRHSETKSFKCELCPHSFVTKAELTSHARTHTGDKPFECEV
CLARFTTSCSLAKHKRKHTGERPYACDLCPMRFTALNVLKNHRRTHTGER
PYVCPFCSKTFTQRGDCQMHQRTHQGERIYICPVCNEEFKSMPEMRSHLA
GHEQHDKRLVHFTFLSNKENGSGALEEELNEMTESALML*
BS01251.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-PA | 639 | CG6654-PA | 1..639 | 1..639 | 3425 | 100 | Plus |
| crol-PH | 686 | CG14938-PH | 151..464 | 299..603 | 496 | 34.2 | Plus |
| crol-PC | 756 | CG14938-PC | 151..463 | 299..603 | 493 | 34 | Plus |
| crol-PB | 891 | CG14938-PB | 328..607 | 324..602 | 489 | 33.3 | Plus |
| crol-PI | 962 | CG14938-PI | 328..607 | 324..602 | 489 | 33.3 | Plus |
| crol-PB | 891 | CG14938-PB | 356..633 | 324..600 | 488 | 33.6 | Plus |
| crol-PB | 891 | CG14938-PB | 305..579 | 329..602 | 486 | 34.3 | Plus |
| crol-PC | 756 | CG14938-PC | 262..516 | 324..572 | 464 | 36.2 | Plus |
| crol-PB | 891 | CG14938-PB | 384..669 | 324..603 | 461 | 33.7 | Plus |
| crol-PB | 891 | CG14938-PB | 412..683 | 324..589 | 449 | 33.9 | Plus |
| crol-PC | 756 | CG14938-PC | 234..515 | 324..599 | 446 | 33.1 | Plus |
| crol-PB | 891 | CG14938-PB | 151..439 | 299..602 | 427 | 31.2 | Plus |
| crol-PH | 686 | CG14938-PH | 234..478 | 323..561 | 381 | 34 | Plus |
| crol-PH | 686 | CG14938-PH | 291..490 | 324..519 | 294 | 33.8 | Plus |
| crol-PB | 891 | CG14938-PB | 496..695 | 324..519 | 294 | 33.8 | Plus |
| crol-PC | 756 | CG14938-PC | 346..521 | 324..493 | 216 | 30.9 | Plus |
