Clone Sequence Records
BS01255.3prime Sequence
872 bp (791 high quality bases) assembled on 2005-11-29
> BS01255.3prime
ATGGTCTAGAAAGCTTTCAGGCCGTGTTACTTGTCAGCGAGGCCATCAGA
AACTCCATTTTGTTGAGAAAGCTCTTGCCTTCGATTTTGTCGAACCTCAC
CTCCTTGAATGTGCCTCCCAGATTCTCCCATAGCTTTTCCGGCACCAGTG
GACTGGGAAAGAAATCCTGTCGTGGACTTCTCGCTATATAAACTTTAACA
TCTATCTGCGGATCGCAGCGAATCTGAACGGCAATCATGCGATCGCTATT
GGGAGATGCCAGAAGGCAGGAACTGGCATTTCCCAGCGGCTCCACCTTGC
CGATACCCAAGTGGTTGCTGTTCGACAGCACGGTCCAGGACATGCAGCGC
GCTAGACTGATCAGGCAGGAGATCTGGTGAGAGTTGATCTGGCAGAGGAT
CAGGTCGCGAAGTTCCTGCGGCTCGTAGGACAGTCGCATAACGCGTCCAT
CGCGACAAATGCATTTAAGAGAGCGCTCCTTGACGTGAATGACCAGCGAG
GTGCGTCCAATGGCATCGTAACCGTGCGTTACAATGTTAATCTTCACACA
CGACATGGTTGGACTGTTCATGGCATTCCAATGCGACACTATCTGCGGGT
CCTTCACATCCCTGGCCAGCGTATCGAGCACATATTGTGTTCGCTTTCGC
ATGAAAATGTGCTGCGCCTGGGCGATGATCTGTTCGAGTATGGTCTGTGA
CTTGGTCATGTCCAACAACGTTTCCCGATCGGCGGCCATCGGACCGGCTA
GCATGCGCTTCTTAGTTGGTCCCAGTGGTGCACTGGCCGGATGGGGAAAG
GGATGGTGTGAGTTTTTGTAGTGCACCTCGCGCAGAAGCTGATGCAGCGA
GTGTTCCAGAACATGGTCATGA
BS01255.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7957-PA | 1929 | MED17-RA | 1074..1929 | 872..17 | 4130 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED17-RA | 2060 | CG7957-RA | 1132..1989 | 872..15 | 4200 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18190274..18191050 | 872..96 | 3795 | 99.2 | Minus |
| 3R | 32079331 | 3R | 18191107..18191194 | 102..15 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:50:50 has no hits.
BS01255.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:57 Download gff for
BS01255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-PA | 1075..1929 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:12 Download gff for
BS01255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7957-PA | 1075..1929 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:30:06 Download gff for
BS01255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 1133..1989 | 15..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:55:10 Download gff for
BS01255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 1133..1989 | 15..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:55:10 Download gff for
BS01255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18190275..18191045 | 101..871 | 99 | -> | Minus |
| 3R | 18191109..18191198 | 13..100 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:30:06 Download gff for
BS01255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14016831..14016920 | 13..100 | 96 | -> | Minus |
| arm_3R | 14015997..14016767 | 101..871 | 99 | -> | Minus |
BS01255.5prime Sequence
865 bp (781 high quality bases) assembled on 2005-11-29
> BS01255.5prime
GAAGTTATCAGTCGACATGTCGAATTCCGTGAATATATCAGTGGAAACGA
CTTGCGAGAACCAGATACGTGAGATTGGCTACGATGGCACCGAATTGTAT
CAGCCGCCGCCGACTTTGTCGGAAAGTCTGGCGAAATGTGCGGCGCGCAT
AGACTTTAGCAAAACGTCGCTGGACGACCTCAAGAAGGAGGAGAAGTCGG
CGGCAGCGGCCGCCGACGAGGACAAAGACGCCACTCAGTTCCAAGAGAGC
CTGTGGCCCTGGGATGCGGTGCGCAACAAGCTGAAGGATGCGCTCACTGA
GATATGTGTGCTGTCCGATGTGATTTCCATTGCCAAGGACAAGCGCTATC
TAGTGCTCGATCCACTGCTCGAGGAGGCTGACGACACCAAGCCCATTGTG
CAGGTGTACAGTCGCAAGAAAGCCATCTCTCAGGCAGCCCAAGTGCTCCT
AAGTGGCGCTGAACGCCTGCGGAACGCGCACAGCGAGCAGCGCAATCGCA
ATGTCTCAGATTTCCACATCGAACTACTGCGCCTGCGACAGAACTGGCGC
CTGAAGAAGGTGTCCAATGCGATTATCGGAGATCTCAGCTACCGCACCGC
GGGCTCCAAGTTTGGCATGAGCGGCACCTTCGAGGTGACCAAAGCTGAAG
AGACCGGTGATGAAGACACAGCCAGCTCATCCAACAGTAGCAGTAGCGTA
TCCGGCAACAATGGCATGCAACTTANAGCCAGCTCCGCATTGCGTGTGAT
TGTTCCAGCGGAACTGCAGGGTGTCGCCTACATAAAGGTGATCACACAGA
AGGATCAGGAGGATTTGTGCACCGCTCAGCTGAATCTGATGGGTCACGGA
CCCAATATAACTGCC
BS01255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7957-PA | 1929 | MED17-RA | 1..849 | 17..865 | 3876 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED17-RA | 2060 | CG7957-RA | 59..907 | 17..865 | 4024 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18189290..18190049 | 106..865 | 3579 | 98 | Plus |
| 3R | 32079331 | 3R | 18189130..18189219 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:47:01 has no hits.
BS01255.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:04:58 Download gff for
BS01255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-PA | 1..849 | 17..865 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:14 Download gff for
BS01255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7957-PA | 1..849 | 17..865 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:20:17 Download gff for
BS01255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 59..907 | 17..865 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:04:40 Download gff for
BS01255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 59..907 | 17..865 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:04:40 Download gff for
BS01255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18189130..18189218 | 17..105 | 100 | -> | Plus |
| 3R | 18189290..18190049 | 106..865 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:20:17 Download gff for
BS01255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14014852..14014940 | 17..105 | 100 | -> | Plus |
| arm_3R | 14015012..14015771 | 106..865 | 98 | | Plus |
BS01255.complete Sequence
1961 bp assembled on 2009-02-12
> BS01255.complete
GAAGTTATCAGTCGACATGTCGAATTCCGTGAATATATCAGTGGAAACGA
CTTGCGAGAACCAGATACGTGAGATTGGCTACGATGGCACCGAATTGTAT
CAGCCGCCGCCGACTTTGTCGGAAAGTCTGGCGAAATGTGCGGCGCGCAT
AGACTTTAGCAAAACGTCGCTGGACGACCTCAAGAAGGAGGAGAAGTCGG
CGGCAGCGGCCGCCGACGAGGACAAAGACGCCACTCAGTTCCAAGAGAGC
CTGTGGCCCTGGGATGCGGTGCGCAACAAGCTGAAGGATGCGCTCACTGA
GATATGTGTGCTGTCCGATGTGATTTCCATTGCCAAGGACAAGCGCTATC
TAGTGCTCGATCCACTGCTCGAGGAGGCTGACGACACCAAGCCCATTGTG
CAGGTGTACAGTCGCAAGAAAGCCATCTCTCAGGCAGCCCAAGTGCTCCT
AAGTGGCGCTGAACGCCTGCGGAACGCGCACAGCGAGCAGCGCAATCGCA
ATGTCTCAGATTTCCACATCGAACTACTGCGCCTGCGACAGAACTGGCGC
CTGAAGAAGGTGTCCAATGCGATTATCGGAGATCTCAGCTACCGCACCGC
GGGCTCCAAGTTTGGCATGAGCGGCACCTTCGAGGTGACCAAAGCTGAAG
AGACCGGTGATGAAGACACAGCCAGCTCATCCAACAGTAGCAGTAGCGTA
TCCGGCAACAATGGCATGCAACTTAAAGCCAGCTCCGCATTGCGTGTGAT
TGTTCCAGCGGAACTGCAGGGTGTCGCCTACATAAAGGTGATCACACAGA
AGGATCAGGAGGATTTGTGCACCGCTCAGCTGAATCTGATGGGTCACGGA
CCCAATATAACTGCCCAGGTGGGTGTCTGGCAGAAGACACTGGAGTTCGC
CCAGAATGTGCTCTTCTGCAAGGAGCTATTCGCTCAGTTGGCACGTGAAG
CTATCCAATTGCAAGCACCAATTCCACATGTGGTCATCGGCAACCAAATT
CGCGCCACTCTGCTGCCTAACATTCAACTTATTATCTCGTTGTGCCACTC
AACCACCTTCGATTCCAGCCAGCCGGCGCCAATTAACGATCATGACCATG
TTCTGGAACACTCGCTGCATCAGCTTCTGCGCGAGGTGCACTACAAAAAC
TCACACCATCCCTTTCCCCATCCGGCCAGTGCACCACTGGGACCAACTAA
GAAGCGCATGCTAGCCGGTCCGATGGCCGCCGATCGGGAAACGTTGTTGG
ACATGACCAAGTCACAGACCATACTCGAACAGATCATCGCCCAGGCGCAG
CACATTTTCATGCGAAAGCGAACACAATATGTGCTCGATACGCTGGCCAG
GGATGTGAAGGACCCGCAGATAGTGTCGCATTGGAATGCCATGAACAGTC
CAACCATGTCGTGTGTGAAGATTAACATTGTAACGCACGGTTACGATGCC
ATTGGACGCACCTCGCTGGTCATTCACGTCAAGGAGCGCTCTCTTAAATG
CATTTGTCGCGATGGACGCGTTATGCGACTGTCCTACGAGCCGCAGGAAC
TTCGCGACCTGATCCTCTGCCAGATCAACTCTCACCAGATCTCCTGCCTG
ATCAGTCTAGCGCGCTGCATGTCCTGGACCGTGCTGTCGAACAGCAACCA
CTTGGGTATCGGCAAGGTGGAGCCGCTGGGAAATGCCAGTTCCTGCCTTC
TGGCATCTCCCAATAGCGATCGCATGATTGCCGTTCAGATTCGCTGCGAT
CCGCAGATAGATGTTAAAGTTTATATAGCGAGAAGTCCACGACAGGATTT
CTTTCCCAGTCCACTGGTGCCGGAAAAGCTATGGGAGAATCTGGGAGGCA
CATTCAAGGAGGTGAGGTTCGACAAAATCGAAGGCAAGAGCTTTCTCAAC
AAAATGGAGTTTCTGATGGCCTCGCTGACAAGTAACACGGCCTGAAAGCT
TTCTAGACCAT
BS01255.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED17-RA | 1929 | CG7957-PA | 1..1929 | 17..1945 | 9330 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED17-RA | 2060 | CG7957-RA | 59..1989 | 17..1947 | 9340 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18189290..18191050 | 106..1866 | 8490 | 98.8 | Plus |
| 3R | 32079331 | 3R | 18189130..18189219 | 17..106 | 450 | 100 | Plus |
| 3R | 32079331 | 3R | 18191107..18191194 | 1860..1947 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:07:22 has no hits.
BS01255.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:38 Download gff for
BS01255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 66..1993 | 17..1944 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:15 Download gff for
BS01255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 59..1986 | 17..1944 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:48 Download gff for
BS01255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 59..1986 | 17..1944 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:48 Download gff for
BS01255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18189130..18189218 | 17..105 | 100 | -> | Plus |
| 3R | 18189290..18191045 | 106..1861 | 98 | -> | Plus |
| 3R | 18191109..18191191 | 1862..1944 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:15 Download gff for
BS01255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14014852..14014940 | 17..105 | 100 | -> | Plus |
| arm_3R | 14015012..14016767 | 106..1861 | 98 | -> | Plus |
| arm_3R | 14016831..14016913 | 1862..1944 | 100 | | Plus |
BS01255.pep Sequence
Translation from 16 to 1944
> BS01255.pep
MSNSVNISVETTCENQIREIGYDGTELYQPPPTLSESLAKCAARIDFSKT
SLDDLKKEEKSAAAAADEDKDATQFQESLWPWDAVRNKLKDALTEICVLS
DVISIAKDKRYLVLDPLLEEADDTKPIVQVYSRKKAISQAAQVLLSGAER
LRNAHSEQRNRNVSDFHIELLRLRQNWRLKKVSNAIIGDLSYRTAGSKFG
MSGTFEVTKAEETGDEDTASSSNSSSSVSGNNGMQLKASSALRVIVPAEL
QGVAYIKVITQKDQEDLCTAQLNLMGHGPNITAQVGVWQKTLEFAQNVLF
CKELFAQLAREAIQLQAPIPHVVIGNQIRATLLPNIQLIISLCHSTTFDS
SQPAPINDHDHVLEHSLHQLLREVHYKNSHHPFPHPASAPLGPTKKRMLA
GPMAADRETLLDMTKSQTILEQIIAQAQHIFMRKRTQYVLDTLARDVKDP
QIVSHWNAMNSPTMSCVKINIVTHGYDAIGRTSLVIHVKERSLKCICRDG
RVMRLSYEPQELRDLILCQINSHQISCLISLARCMSWTVLSNSNHLGIGK
VEPLGNASSCLLASPNSDRMIAVQIRCDPQIDVKVYIARSPRQDFFPSPL
VPEKLWENLGGTFKEVRFDKIEGKSFLNKMEFLMASLTSNTA*
BS01255.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED17-PA | 642 | CG7957-PA | 1..642 | 1..642 | 3294 | 100 | Plus |
