Clone BS01260 Report

Search the DGRC for BS01260

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:12
Well:60
Vector:pDNR-Dual
Associated Gene/Transcriptttk-RC
Protein status:BS01260.pep: full length peptide match
Sequenced Size:1964

Clone Sequence Records

BS01260.3prime Sequence

844 bp (821 high quality bases) assembled on 2005-11-29

> BS01260.3prime
ATGGTCTAGAAAGCTTTTACTGCGCCGCAGCTGCTGGTGCTGGCGGTGCG
GAGGTCGTCAACGGACCCAGGGATCCGCTGGACGAGGACGTCGACGACGA
GGAGGAGGTGGATAGCGCATTGCTGGTGGCTGGCAGCGACTGATTTGAGT
TCTGACCACTCAGATCCGGCGGCGGAGGCGTCGAGGCTCCCGAAACTCCC
AGTGGCTGGCCTGCTAGATTCGCTGCCGCGACTGTGGCCAACGCCGTCGA
GGGATTTTCGATCTTGTGGATGATTTTCACGTGCGCCGTCATATTGTCCT
TGCGCGTAAACTCTTTGAAGCAGAAGGGACAGGGGTACACTTTCACATTT
CGCTTGTGGGAGGTAACATAGTGACGGCAGAAGTTACTAATGTGCGTGTA
GACGCGGGAGCAGACTTTGCATCGGTACGTATGCTCGCCCTCTTTGGTGC
AGTAGTCCCTCACTGAGCCCTCCGCCTCGCCCTCGCCAACGTTGCTGCTA
AGATTCAGCTTGGTTTTGACAGAGGGAGTTCCTAATCCAGCACTCAGGTT
CGGCGTGCTTCCGCTCAGACCAGCAGCCTTCAACTTGAATCCATCGTTGC
TGTTGTAAATGTCGAGGTATTCCTGGCTGCTAAACACAGCCGGTTTTACA
TCGCCGTTCTGTTTGCCCAGTTTGGGCCGCTTCTGGACGCGCGGCTTGAC
CGTGGCTGTGGAAAAGGAGCCGGCAGGCGAGACCAATGGCGTGGAGGCGG
CGTTGACCTTGCCAATGGGCGTTAGTTTGGGTATGCTGACCATGCTTTTC
ACCTGCGCTCCACCAGCCGCCATTCCCGATAATGTTAGTTTGGA

BS01260.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1856-PF 1932 ttk-RF 1123..1932 826..17 4050 100 Minus
CG1856-PC 1932 ttk-RC 1123..1932 826..17 4050 100 Minus
CG1856-PD 1932 ttk-RD 1123..1932 826..17 4050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
ttk-RH 4252 CG1856-RH 1357..2182 842..17 4085 99.8 Minus
ttk-RD 4254 CG1856-RD 1359..2184 842..17 4085 99.8 Minus
ttk-RC 4497 CG1856-RC 1602..2427 842..17 4085 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31729879..31730698 837..17 4055 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 17:39:27 has no hits.

BS01260.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:04 Download gff for BS01260.3prime
Subject Subject Range Query Range Percent Splice Strand
ttk-PD 1106..1932 17..843 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:20 Download gff for BS01260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1856-PD 1106..1932 17..843 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:09:44 Download gff for BS01260.3prime
Subject Subject Range Query Range Percent Splice Strand
ttk-RC 1601..2430 12..843 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:22 Download gff for BS01260.3prime
Subject Subject Range Query Range Percent Splice Strand
ttk-RC 1601..2430 12..843 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:22 Download gff for BS01260.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31729872..31730701 12..843 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:09:44 Download gff for BS01260.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27555594..27556423 12..843 99   Minus

BS01260.5prime Sequence

787 bp (786 high quality bases) assembled on 2005-11-29

> BS01260.5prime
GAAGTTATCAGTCGACATGAAGATGGCATCTCAACGCTTCTGCCTGCGGT
GGAACAACCACCAGAGCAACCTTCTGTCCGTCTTCGACCAGCTGTTGCAC
GCAGAAACCTTCACAGATGTGACGCTGGCCGTCGAGGGGCAACACCTGAA
GGCACACAAGATGGTGCTATCCGCCTGCAGTCCCTACTTTAATACCCTCT
TTGTAAGTCATCCGGAAAAGCATCCGATTGTCATACTTAAGGATGTGCCC
TACTCGGACATGAAGTCGTTGCTAGACTTTATGTACAGGGGCGAGGTCTC
AGTGGACCAGGAGCGACTCACTGCATTCCTGCGCGTGGCCGAGAGCCTGC
GCATCAAGGGCCTCACCGAGGTCAACGACGACAAGCCCTCGCCGGCAGCA
GCAGCTGCAGGAGCGGGTGCGACGGGCTCTGAGAGCACAGCCACTACACC
CCAGCTGCAGCGCATCCAACCGTATTTGGTGCCCCAGCGGAATCGCTCGC
AGGCCGGCGGTCTGCTGGCCAGTGCCGCCAATGCCGGAAATACACCCACC
CTGCCGGTGCAGCCATCGCTGCTCAGCTCGGCCCTGATGCCCAAGCGAAA
GAGGGGCAGACCCCGGAAGCTATCTGGCAGCTCGAATGGCACGGGGAACG
ACTACGACGACTTTGATCGCGAGAACATGATGAACGACTCCTCCGACCTG
NGCAACGGCAAAATGTGCAACGAGTCCTACTCCGGCAATGACGATGGCTC
CGACGACAATCAGCCGAACGCAGGACACACGGATGAT

BS01260.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1856-PE 2442 ttk-RE 1..771 17..787 3836 99.8 Plus
CG1856-PF 1932 ttk-RF 1..771 17..787 3836 99.8 Plus
CG1856-PB 2442 ttk-RB 1..771 17..787 3836 99.8 Plus
CG1856-PC 1932 ttk-RC 1..771 17..787 3836 99.8 Plus
CG1856-PA 2442 ttk-RA 1..771 17..787 3836 99.8 Plus
CG1856-PD 1932 ttk-RD 1..771 17..787 3836 99.8 Plus
CG9102-PA 3204 bab2-RA 703..732 149..178 150 100 Plus
CG11494-PA 2232 BtbVII-RA 16..42 38..64 135 100 Plus
CG11494-PB 2232 BtbVII-RB 16..42 38..64 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
ttk-RH 4252 CG1856-RH 251..1021 17..787 3844 99.9 Plus
ttk-RG 3588 CG1856-RG 251..1021 17..787 3844 99.9 Plus
ttk-RD 4254 CG1856-RD 253..1023 17..787 3844 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31727620..31728248 159..787 3134 99.8 Plus
3R 32079331 3R 31727291..31727434 17..160 720 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:52:29 has no hits.

BS01260.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:05 Download gff for BS01260.5prime
Subject Subject Range Query Range Percent Splice Strand
ttk-PB 1..771 17..787 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:21 Download gff for BS01260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1856-PB 1..771 17..787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:37:50 Download gff for BS01260.5prime
Subject Subject Range Query Range Percent Splice Strand
ttk-RD 253..1023 17..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:15 Download gff for BS01260.5prime
Subject Subject Range Query Range Percent Splice Strand
ttk-RD 253..1023 17..787 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:15 Download gff for BS01260.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31727291..31727434 17..160 100 -> Plus
3R 31727622..31728248 161..787 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:37:50 Download gff for BS01260.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27553013..27553156 17..160 100 -> Plus
arm_3R 27553344..27553970 161..787 99   Plus

BS01260.complete Sequence

1964 bp assembled on 2008-08-15

GenBank Submission: FJ634577

> BS01260.complete
GAAGTTATCAGTCGACATGAAGATGGCATCTCAACGCTTCTGCCTGCGGT
GGAACAACCACCAGAGCAACCTTCTGTCCGTCTTCGACCAGCTGTTGCAC
GCAGAAACCTTCACAGATGTGACGCTGGCCGTCGAGGGGCAACACCTGAA
GGCACACAAGATGGTGCTATCCGCCTGCAGTCCCTACTTTAATACCCTCT
TTGTAAGTCATCCGGAAAAGCATCCGATTGTCATACTTAAGGATGTGCCC
TACTCGGACATGAAGTCGTTGCTAGACTTTATGTACAGGGGCGAGGTCTC
AGTGGACCAGGAGCGACTCACTGCATTCCTGCGCGTGGCCGAGAGCCTGC
GCATCAAGGGCCTCACCGAGGTCAACGACGACAAGCCCTCGCCGGCAGCA
GCAGCTGCAGGAGCGGGTGCGACGGGCTCTGAGAGCACAGCCACTACACC
CCAGCTGCAGCGCATCCAACCGTATTTGGTGCCCCAGCGGAATCGCTCGC
AGGCCGGCGGTCTGCTGGCCAGTGCCGCCAATGCCGGAAATACACCCACC
CTGCCGGTGCAGCCATCGCTGCTCAGCTCGGCCCTGATGCCCAAGCGAAA
GAGGGGCAGACCCCGGAAGCTATCTGGCAGCTCGAATGGCACGGGGAACG
ACTACGACGACTTTGATCGCGAGAACATGATGAACGACTCCTCCGACCTG
GGCAACGGCAAAATGTGCAACGAGTCCTACTCCGGCAATGACGATGGCTC
CGACGACAATCAGCCGAACGCAGGACACACGGATGATCTAAATGAAAGTC
GCGATTCTCTGCCCTCGAAACGATCAAAGAACTCCAAGGATCACCGCGTG
GTGAGCCATCATGAAGACAACAGCACTTCCGACGGAAACGACAGCGATGG
CGAAGGTCTGGACACATCATATATGGAACCTCAACTTATGCTGGACGAAT
ATGACGAGCCCGTAGAGTTCAAGTACAACCCGCTCACCGACAACAGCTCA
CCCACGCAGGACCACACGGATGGTAGTCACCTCAACGAGCAGGCGCGCCA
ACAAGCCTTCCTCATCGCTGCCCAGAGAAAACACCAGGTGGAAACAGCAG
CAGCGGCGGCGGCCAGCGGAATCAAACTTAACATTATCGGAATGGCGGCT
GGTGGAGCGCAGGTGAAAAGCATGGTCAGCATACCCAAACTAACGCCCAT
TGGCAAGGTCAACGCCGCCTCCACGCCATTGGTCTCGCCTGCCGGCTCCT
TTTCCACAGCCACGGTCAAGCCGCGCGTCCAGAAGCGGCCCAAACTGGGC
AAACAGAACGGCGATGTAAAACCGGCTGTGTTTAGCAGCCAGGAATACCT
CGACATTTACAACAGCAACGATGGATTCAAGTTGAAGGCTGCTGGTCTGA
GCGGAAGCACGCCGAACCTGAGTGCTGGATTAGGAACTCCCTCTGTCAAA
ACCAAGCTGAATCTTAGCAGCAACGTTGGCGAGGGCGAGGCGGAGGGCTC
AGTGAGGGACTACTGCACCAAAGAGGGCGAGCATACGTACCGATGCAAAG
TCTGCTCCCGCGTCTACACGCACATTAGTAACTTCTGCCGTCACTATGTT
ACCTCCCACAAGCGAAATGTGAAAGTGTACCCCTGTCCCTTCTGCTTCAA
AGAGTTTACGCGCAAGGACAATATGACGGCGCACGTGAAAATCATCCACA
AGATCGAAAATCCCTCGACGGCGTTGGCCACAGTCGCGGCAGCGAATCTA
GCAGGCCAGCCACTGGGAGTTTCGGGAGCCTCGACGCCTCCGCCGCCGGA
TCTGAGTGGTCAGAACTCAAATCAGTCGCTGCCAGCCACCAGCAATGCGC
TATCCACCTCCTCCTCGTCGTCGACGTCCTCGTCCAGCGGATCCCTGGGT
CCGTTGACGACCTCCGCACCGCCAGCACCAGCAGCTGCGGCGCAGTAAAA
GCTTTCTAGACCAT

BS01260.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
ttk-RH 1932 CG1856-PH 1..1932 17..1948 9660 100 Plus
ttk-RD 1932 CG1856-PD 1..1932 17..1948 9660 100 Plus
ttk-RC 1932 CG1856-PC 1..1932 17..1948 9660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
ttk-RH 4252 CG1856-RH 251..2182 17..1948 9660 100 Plus
ttk-RD 4254 CG1856-RD 253..2184 17..1948 9660 100 Plus
ttk-RC 4497 CG1856-RC 496..2427 17..1948 9660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31729631..31730698 881..1948 5340 100 Plus
3R 32079331 3R 31727620..31728261 159..800 3195 99.8 Plus
3R 32079331 3R 31727291..31727434 17..160 720 100 Plus
3R 32079331 3R 31728392..31728479 794..881 440 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:35:04 has no hits.

BS01260.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:32 Download gff for BS01260.complete
Subject Subject Range Query Range Percent Splice Strand
ttk-RD 568..2502 17..1953 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:41 Download gff for BS01260.complete
Subject Subject Range Query Range Percent Splice Strand
ttk-RC 496..2425 17..1946 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:07 Download gff for BS01260.complete
Subject Subject Range Query Range Percent Splice Strand
ttk-RD 568..2497 17..1946 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:06 Download gff for BS01260.complete
Subject Subject Range Query Range Percent Splice Strand
ttk-RC 496..2425 17..1946 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:06 Download gff for BS01260.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31728392..31728479 794..881 100 -> Plus
3R 31727291..31727434 17..160 100 -> Plus
3R 31727622..31728254 161..793 100 -> Plus
3R 31729632..31730696 882..1946 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:41 Download gff for BS01260.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27553013..27553156 17..160 100 -> Plus
arm_3R 27553344..27553976 161..793 100 -> Plus
arm_3R 27554114..27554201 794..881 100 -> Plus
arm_3R 27555354..27556418 882..1946 100   Plus

BS01260.pep Sequence

Translation from 16 to 1947

> BS01260.pep
MKMASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMV
LSACSPYFNTLFVSHPEKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQER
LTAFLRVAESLRIKGLTEVNDDKPSPAAAAAGAGATGSESTATTPQLQRI
QPYLVPQRNRSQAGGLLASAANAGNTPTLPVQPSLLSSALMPKRKRGRPR
KLSGSSNGTGNDYDDFDRENMMNDSSDLGNGKMCNESYSGNDDGSDDNQP
NAGHTDDLNESRDSLPSKRSKNSKDHRVVSHHEDNSTSDGNDSDGEGLDT
SYMEPQLMLDEYDEPVEFKYNPLTDNSSPTQDHTDGSHLNEQARQQAFLI
AAQRKHQVETAAAAAASGIKLNIIGMAAGGAQVKSMVSIPKLTPIGKVNA
ASTPLVSPAGSFSTATVKPRVQKRPKLGKQNGDVKPAVFSSQEYLDIYNS
NDGFKLKAAGLSGSTPNLSAGLGTPSVKTKLNLSSNVGEGEAEGSVRDYC
TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRK
DNMTAHVKIIHKIENPSTALATVAAANLAGQPLGVSGASTPPPPDLSGQN
SNQSLPATSNALSTSSSSSTSSSSGSLGPLTTSAPPAPAAAAQ*

BS01260.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
ttk-PH 643 CG1856-PH 1..643 1..643 3328 100 Plus
ttk-PD 643 CG1856-PD 1..643 1..643 3328 100 Plus
ttk-PC 643 CG1856-PC 1..643 1..643 3328 100 Plus
ttk-PF 643 CG1856-PF 1..643 1..643 3328 100 Plus
ttk-PG 813 CG1856-PG 1..288 1..288 1498 100 Plus