Clone Sequence Records
BS01260.3prime Sequence
844 bp (821 high quality bases) assembled on 2005-11-29
> BS01260.3prime
ATGGTCTAGAAAGCTTTTACTGCGCCGCAGCTGCTGGTGCTGGCGGTGCG
GAGGTCGTCAACGGACCCAGGGATCCGCTGGACGAGGACGTCGACGACGA
GGAGGAGGTGGATAGCGCATTGCTGGTGGCTGGCAGCGACTGATTTGAGT
TCTGACCACTCAGATCCGGCGGCGGAGGCGTCGAGGCTCCCGAAACTCCC
AGTGGCTGGCCTGCTAGATTCGCTGCCGCGACTGTGGCCAACGCCGTCGA
GGGATTTTCGATCTTGTGGATGATTTTCACGTGCGCCGTCATATTGTCCT
TGCGCGTAAACTCTTTGAAGCAGAAGGGACAGGGGTACACTTTCACATTT
CGCTTGTGGGAGGTAACATAGTGACGGCAGAAGTTACTAATGTGCGTGTA
GACGCGGGAGCAGACTTTGCATCGGTACGTATGCTCGCCCTCTTTGGTGC
AGTAGTCCCTCACTGAGCCCTCCGCCTCGCCCTCGCCAACGTTGCTGCTA
AGATTCAGCTTGGTTTTGACAGAGGGAGTTCCTAATCCAGCACTCAGGTT
CGGCGTGCTTCCGCTCAGACCAGCAGCCTTCAACTTGAATCCATCGTTGC
TGTTGTAAATGTCGAGGTATTCCTGGCTGCTAAACACAGCCGGTTTTACA
TCGCCGTTCTGTTTGCCCAGTTTGGGCCGCTTCTGGACGCGCGGCTTGAC
CGTGGCTGTGGAAAAGGAGCCGGCAGGCGAGACCAATGGCGTGGAGGCGG
CGTTGACCTTGCCAATGGGCGTTAGTTTGGGTATGCTGACCATGCTTTTC
ACCTGCGCTCCACCAGCCGCCATTCCCGATAATGTTAGTTTGGA
BS01260.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1856-PF | 1932 | ttk-RF | 1123..1932 | 826..17 | 4050 | 100 | Minus |
CG1856-PC | 1932 | ttk-RC | 1123..1932 | 826..17 | 4050 | 100 | Minus |
CG1856-PD | 1932 | ttk-RD | 1123..1932 | 826..17 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttk-RH | 4252 | CG1856-RH | 1357..2182 | 842..17 | 4085 | 99.8 | Minus |
ttk-RD | 4254 | CG1856-RD | 1359..2184 | 842..17 | 4085 | 99.8 | Minus |
ttk-RC | 4497 | CG1856-RC | 1602..2427 | 842..17 | 4085 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31729879..31730698 | 837..17 | 4055 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:39:27 has no hits.
BS01260.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:04 Download gff for
BS01260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttk-PD | 1106..1932 | 17..843 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:20 Download gff for
BS01260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1856-PD | 1106..1932 | 17..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:09:44 Download gff for
BS01260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttk-RC | 1601..2430 | 12..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:22 Download gff for
BS01260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttk-RC | 1601..2430 | 12..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:22 Download gff for
BS01260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31729872..31730701 | 12..843 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:09:44 Download gff for
BS01260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27555594..27556423 | 12..843 | 99 | | Minus |
BS01260.5prime Sequence
787 bp (786 high quality bases) assembled on 2005-11-29
> BS01260.5prime
GAAGTTATCAGTCGACATGAAGATGGCATCTCAACGCTTCTGCCTGCGGT
GGAACAACCACCAGAGCAACCTTCTGTCCGTCTTCGACCAGCTGTTGCAC
GCAGAAACCTTCACAGATGTGACGCTGGCCGTCGAGGGGCAACACCTGAA
GGCACACAAGATGGTGCTATCCGCCTGCAGTCCCTACTTTAATACCCTCT
TTGTAAGTCATCCGGAAAAGCATCCGATTGTCATACTTAAGGATGTGCCC
TACTCGGACATGAAGTCGTTGCTAGACTTTATGTACAGGGGCGAGGTCTC
AGTGGACCAGGAGCGACTCACTGCATTCCTGCGCGTGGCCGAGAGCCTGC
GCATCAAGGGCCTCACCGAGGTCAACGACGACAAGCCCTCGCCGGCAGCA
GCAGCTGCAGGAGCGGGTGCGACGGGCTCTGAGAGCACAGCCACTACACC
CCAGCTGCAGCGCATCCAACCGTATTTGGTGCCCCAGCGGAATCGCTCGC
AGGCCGGCGGTCTGCTGGCCAGTGCCGCCAATGCCGGAAATACACCCACC
CTGCCGGTGCAGCCATCGCTGCTCAGCTCGGCCCTGATGCCCAAGCGAAA
GAGGGGCAGACCCCGGAAGCTATCTGGCAGCTCGAATGGCACGGGGAACG
ACTACGACGACTTTGATCGCGAGAACATGATGAACGACTCCTCCGACCTG
NGCAACGGCAAAATGTGCAACGAGTCCTACTCCGGCAATGACGATGGCTC
CGACGACAATCAGCCGAACGCAGGACACACGGATGAT
BS01260.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1856-PE | 2442 | ttk-RE | 1..771 | 17..787 | 3836 | 99.8 | Plus |
CG1856-PF | 1932 | ttk-RF | 1..771 | 17..787 | 3836 | 99.8 | Plus |
CG1856-PB | 2442 | ttk-RB | 1..771 | 17..787 | 3836 | 99.8 | Plus |
CG1856-PC | 1932 | ttk-RC | 1..771 | 17..787 | 3836 | 99.8 | Plus |
CG1856-PA | 2442 | ttk-RA | 1..771 | 17..787 | 3836 | 99.8 | Plus |
CG1856-PD | 1932 | ttk-RD | 1..771 | 17..787 | 3836 | 99.8 | Plus |
CG9102-PA | 3204 | bab2-RA | 703..732 | 149..178 | 150 | 100 | Plus |
CG11494-PA | 2232 | BtbVII-RA | 16..42 | 38..64 | 135 | 100 | Plus |
CG11494-PB | 2232 | BtbVII-RB | 16..42 | 38..64 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttk-RH | 4252 | CG1856-RH | 251..1021 | 17..787 | 3844 | 99.9 | Plus |
ttk-RG | 3588 | CG1856-RG | 251..1021 | 17..787 | 3844 | 99.9 | Plus |
ttk-RD | 4254 | CG1856-RD | 253..1023 | 17..787 | 3844 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31727620..31728248 | 159..787 | 3134 | 99.8 | Plus |
3R | 32079331 | 3R | 31727291..31727434 | 17..160 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:52:29 has no hits.
BS01260.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:05 Download gff for
BS01260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttk-PB | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:21 Download gff for
BS01260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1856-PB | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:37:50 Download gff for
BS01260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttk-RD | 253..1023 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:15 Download gff for
BS01260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttk-RD | 253..1023 | 17..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:15 Download gff for
BS01260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31727291..31727434 | 17..160 | 100 | -> | Plus |
3R | 31727622..31728248 | 161..787 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:37:50 Download gff for
BS01260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27553013..27553156 | 17..160 | 100 | -> | Plus |
arm_3R | 27553344..27553970 | 161..787 | 99 | | Plus |
BS01260.complete Sequence
1964 bp assembled on 2008-08-15
GenBank Submission: FJ634577
> BS01260.complete
GAAGTTATCAGTCGACATGAAGATGGCATCTCAACGCTTCTGCCTGCGGT
GGAACAACCACCAGAGCAACCTTCTGTCCGTCTTCGACCAGCTGTTGCAC
GCAGAAACCTTCACAGATGTGACGCTGGCCGTCGAGGGGCAACACCTGAA
GGCACACAAGATGGTGCTATCCGCCTGCAGTCCCTACTTTAATACCCTCT
TTGTAAGTCATCCGGAAAAGCATCCGATTGTCATACTTAAGGATGTGCCC
TACTCGGACATGAAGTCGTTGCTAGACTTTATGTACAGGGGCGAGGTCTC
AGTGGACCAGGAGCGACTCACTGCATTCCTGCGCGTGGCCGAGAGCCTGC
GCATCAAGGGCCTCACCGAGGTCAACGACGACAAGCCCTCGCCGGCAGCA
GCAGCTGCAGGAGCGGGTGCGACGGGCTCTGAGAGCACAGCCACTACACC
CCAGCTGCAGCGCATCCAACCGTATTTGGTGCCCCAGCGGAATCGCTCGC
AGGCCGGCGGTCTGCTGGCCAGTGCCGCCAATGCCGGAAATACACCCACC
CTGCCGGTGCAGCCATCGCTGCTCAGCTCGGCCCTGATGCCCAAGCGAAA
GAGGGGCAGACCCCGGAAGCTATCTGGCAGCTCGAATGGCACGGGGAACG
ACTACGACGACTTTGATCGCGAGAACATGATGAACGACTCCTCCGACCTG
GGCAACGGCAAAATGTGCAACGAGTCCTACTCCGGCAATGACGATGGCTC
CGACGACAATCAGCCGAACGCAGGACACACGGATGATCTAAATGAAAGTC
GCGATTCTCTGCCCTCGAAACGATCAAAGAACTCCAAGGATCACCGCGTG
GTGAGCCATCATGAAGACAACAGCACTTCCGACGGAAACGACAGCGATGG
CGAAGGTCTGGACACATCATATATGGAACCTCAACTTATGCTGGACGAAT
ATGACGAGCCCGTAGAGTTCAAGTACAACCCGCTCACCGACAACAGCTCA
CCCACGCAGGACCACACGGATGGTAGTCACCTCAACGAGCAGGCGCGCCA
ACAAGCCTTCCTCATCGCTGCCCAGAGAAAACACCAGGTGGAAACAGCAG
CAGCGGCGGCGGCCAGCGGAATCAAACTTAACATTATCGGAATGGCGGCT
GGTGGAGCGCAGGTGAAAAGCATGGTCAGCATACCCAAACTAACGCCCAT
TGGCAAGGTCAACGCCGCCTCCACGCCATTGGTCTCGCCTGCCGGCTCCT
TTTCCACAGCCACGGTCAAGCCGCGCGTCCAGAAGCGGCCCAAACTGGGC
AAACAGAACGGCGATGTAAAACCGGCTGTGTTTAGCAGCCAGGAATACCT
CGACATTTACAACAGCAACGATGGATTCAAGTTGAAGGCTGCTGGTCTGA
GCGGAAGCACGCCGAACCTGAGTGCTGGATTAGGAACTCCCTCTGTCAAA
ACCAAGCTGAATCTTAGCAGCAACGTTGGCGAGGGCGAGGCGGAGGGCTC
AGTGAGGGACTACTGCACCAAAGAGGGCGAGCATACGTACCGATGCAAAG
TCTGCTCCCGCGTCTACACGCACATTAGTAACTTCTGCCGTCACTATGTT
ACCTCCCACAAGCGAAATGTGAAAGTGTACCCCTGTCCCTTCTGCTTCAA
AGAGTTTACGCGCAAGGACAATATGACGGCGCACGTGAAAATCATCCACA
AGATCGAAAATCCCTCGACGGCGTTGGCCACAGTCGCGGCAGCGAATCTA
GCAGGCCAGCCACTGGGAGTTTCGGGAGCCTCGACGCCTCCGCCGCCGGA
TCTGAGTGGTCAGAACTCAAATCAGTCGCTGCCAGCCACCAGCAATGCGC
TATCCACCTCCTCCTCGTCGTCGACGTCCTCGTCCAGCGGATCCCTGGGT
CCGTTGACGACCTCCGCACCGCCAGCACCAGCAGCTGCGGCGCAGTAAAA
GCTTTCTAGACCAT
BS01260.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:35:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttk-RH | 1932 | CG1856-PH | 1..1932 | 17..1948 | 9660 | 100 | Plus |
ttk-RD | 1932 | CG1856-PD | 1..1932 | 17..1948 | 9660 | 100 | Plus |
ttk-RC | 1932 | CG1856-PC | 1..1932 | 17..1948 | 9660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttk-RH | 4252 | CG1856-RH | 251..2182 | 17..1948 | 9660 | 100 | Plus |
ttk-RD | 4254 | CG1856-RD | 253..2184 | 17..1948 | 9660 | 100 | Plus |
ttk-RC | 4497 | CG1856-RC | 496..2427 | 17..1948 | 9660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31729631..31730698 | 881..1948 | 5340 | 100 | Plus |
3R | 32079331 | 3R | 31727620..31728261 | 159..800 | 3195 | 99.8 | Plus |
3R | 32079331 | 3R | 31727291..31727434 | 17..160 | 720 | 100 | Plus |
3R | 32079331 | 3R | 31728392..31728479 | 794..881 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:35:04 has no hits.
BS01260.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:32 Download gff for
BS01260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttk-RD | 568..2502 | 17..1953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:41 Download gff for
BS01260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttk-RC | 496..2425 | 17..1946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:07 Download gff for
BS01260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttk-RD | 568..2497 | 17..1946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:06 Download gff for
BS01260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttk-RC | 496..2425 | 17..1946 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:06 Download gff for
BS01260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31728392..31728479 | 794..881 | 100 | -> | Plus |
3R | 31727291..31727434 | 17..160 | 100 | -> | Plus |
3R | 31727622..31728254 | 161..793 | 100 | -> | Plus |
3R | 31729632..31730696 | 882..1946 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:41 Download gff for
BS01260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27553013..27553156 | 17..160 | 100 | -> | Plus |
arm_3R | 27553344..27553976 | 161..793 | 100 | -> | Plus |
arm_3R | 27554114..27554201 | 794..881 | 100 | -> | Plus |
arm_3R | 27555354..27556418 | 882..1946 | 100 | | Plus |
BS01260.pep Sequence
Translation from 16 to 1947
> BS01260.pep
MKMASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMV
LSACSPYFNTLFVSHPEKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQER
LTAFLRVAESLRIKGLTEVNDDKPSPAAAAAGAGATGSESTATTPQLQRI
QPYLVPQRNRSQAGGLLASAANAGNTPTLPVQPSLLSSALMPKRKRGRPR
KLSGSSNGTGNDYDDFDRENMMNDSSDLGNGKMCNESYSGNDDGSDDNQP
NAGHTDDLNESRDSLPSKRSKNSKDHRVVSHHEDNSTSDGNDSDGEGLDT
SYMEPQLMLDEYDEPVEFKYNPLTDNSSPTQDHTDGSHLNEQARQQAFLI
AAQRKHQVETAAAAAASGIKLNIIGMAAGGAQVKSMVSIPKLTPIGKVNA
ASTPLVSPAGSFSTATVKPRVQKRPKLGKQNGDVKPAVFSSQEYLDIYNS
NDGFKLKAAGLSGSTPNLSAGLGTPSVKTKLNLSSNVGEGEAEGSVRDYC
TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRK
DNMTAHVKIIHKIENPSTALATVAAANLAGQPLGVSGASTPPPPDLSGQN
SNQSLPATSNALSTSSSSSTSSSSGSLGPLTTSAPPAPAAAAQ*
BS01260.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttk-PH | 643 | CG1856-PH | 1..643 | 1..643 | 3328 | 100 | Plus |
ttk-PD | 643 | CG1856-PD | 1..643 | 1..643 | 3328 | 100 | Plus |
ttk-PC | 643 | CG1856-PC | 1..643 | 1..643 | 3328 | 100 | Plus |
ttk-PF | 643 | CG1856-PF | 1..643 | 1..643 | 3328 | 100 | Plus |
ttk-PG | 813 | CG1856-PG | 1..288 | 1..288 | 1498 | 100 | Plus |