Clone Sequence Records
BS01262.3prime Sequence
841 bp (688 high quality bases) assembled on 2005-11-29
> BS01262.3prime
ATGGTCTAGAAAGCTTTCATACCTTAGTGGTTAGATCCAAGGCATTCGAG
GTGGCCACTTTGACGGGGGCTTCCAACCTCAGACGTTTTCCATTCTCACT
GCTGGCCTCTATGAGTTCGTCCAGTTTCCTCTTGATCGTTTCACTGGCCT
CGCTATCGCTTAGGATACTATTATTATTATTATTATTATTGTTATTGTTG
TTGCTGATACTGTTGTTGTTATTGTGGGTATTTTCAATGCTGGTCTTTGC
TGTCTCTGTGGTGCTGGAGTGATCTTCCTCTATCTCCGGATCAGCCGTTT
CTCGAACTGATATCTCCTCTTCAGGCGTTACTTTCAGATCCTCATCGTCA
TCATCTGTATCGTTCTTTTCTACATCGCTAGAGATCTCGGTTTCTGGTTC
GATTTCTGGGCTACTACTTTTACTGCTCAGGGAACTGCCGGTGGTCTTCA
TGCTCAGATCAATGGGATTATCTTGACCGGGACTGGGTCTGGGATCCTCG
CCGGCTGGGGTTCGCTCTTCTTGTTGAGCGGGTGAGTGGGGTGGCGTCAT
GGACACCACCAGATCCTCCTCCTCATCGTCGTGCTCGGCGCCATCAATAA
TTCCATCCGCTCTCGCCTCGTCGTCCTCTTCGTTCTGGCGACTTTTCACT
CTCTCCCTGCCACTTTCCGAGTTTGGTGTGACCAGAGCTGAAATTGAGTA
ATCCTGCTTGGAGTGTGGCGGTAGTTTGGTGGTCGGCGGAGGACTTTGTT
GCTGGGACTTGAGCACAGCGTCTAAATAGAAGCGTTTGGTTAGCTCATCG
GCAGCACCACCATTTCGTAGCAGGTGGTTGTTGTTCGCATG
BS01262.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4761-PA | 1944 | knrl-RA | 1147..1940 | 814..21 | 3970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knrl-RB | 2925 | CG4761-RB | 2084..2910 | 841..15 | 4075 | 99.6 | Minus |
| knrl-RA | 3909 | CG4761-RA | 2084..2910 | 841..15 | 4075 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:52:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20598140..20598966 | 15..841 | 4075 | 99.5 | Plus |
Blast to na_te.dros performed 2015-02-06 15:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib4 | 2656 | transib4 TRANSIB4 2656bp | 322..379 | 185..238 | 109 | 72.9 | Plus |
BS01262.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:09 Download gff for
BS01262.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-PA | 1120..1944 | 17..841 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:25 Download gff for
BS01262.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4761-PA | 1120..1944 | 17..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:17:44 Download gff for
BS01262.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 2084..2917 | 7..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:03:20 Download gff for
BS01262.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 2084..2917 | 7..841 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:03:20 Download gff for
BS01262.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20598133..20598966 | 7..841 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:17:44 Download gff for
BS01262.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20591233..20592066 | 7..841 | 99 | | Plus |
BS01262.complete Sequence
1976 bp (1976 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ638763
> BS01262.complete
GAAGTTATCAGTCGACATGATGAATCAGGATAATCCATATGCGATGAATC
AGACGTGCAAGGTGTGTGGAGAGCCGGCGGCTGGATTCCATTTCGGAGCC
TTTACATGCGAGGGCTGCAAGTCCTTCTTCGGCCGATCGTACAACAATCT
GTCGTCGATATCCGACTGCAAGAACAACGGCGAGTGCATCATCAACAAGA
AGAACCGAACCGCCTGCAAGGCGTGCCGTCTGAAGAAGTGCCTCATGGTG
GGCATGTCGAAGAGTGGATCCCGATATGGTCGTCGCTCCAACTGGTTCAA
GATCCACTGTCTGCTGCAGGAGCAGCAGCAGCAGGCGGTGGCTGCGATGG
CGGCGCACCACAATAGCCAGCAGGCGGGTGGTGGAAGTTCCGGTGGATCG
GGCGGTGGTCAAGGAATGCCCAACGGGGTCAAGGGCATGTCGGGTGTACC
CCCACCGGCGGCTGCAGCAGCTGCTCTGGGAATGCTCGGGCATCCTGGTG
GTTATCCGGGTCTGTATGCCGTTGCCAATGCTGGCGGCTCGTCACGGAGT
AAAGAGGAGCTAATGATGTTGGGATTGGATGGCAGCGTGGAGTACGGCTC
CCATAAACATCCGGTGGTGGCATCACCCTCCGTAAGTTCCCCGGATTCCC
ACAACTCCGACAGCTCTGTGGAGGTGAGTTCGGTGCGAGGCAACCCACTC
CTACACTTGGGCGGAAAATCCAATTCGGGAGGATCTTCAAGTGGTGCCGA
TGGCAGTCATTCGGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGACGCCCG
GCAGACCGCCACAGATGCGCAAGGATTTGTCGCCATTCCTGCCGCTGCCC
TTCCCAGGCCTAGCATCAATGCCCGTGATGCCACCACCCGCGTTCCTGCC
TCCCTCGCACCTACTCTTCCCCGGCTACCACCCCGCCCTGTACTCGCACC
ACCAGGGCTTGCTGAAGCCAACGCCAGAGCAACAACAGGCAGCGGTGGCT
GCGGCGGCCGTGCAACATCTATTCAACTCCAGTGGTGCAGGCCAGCGTTT
CGCACCGGGCACTTCACCATTTGCCAACCACCAGCAGCACCACAAGGAAG
AGGATCAGCCAGCACCAGCCAGAAGTCCAAGTACCCATGCGAACAACAAC
CACCTGCTAACGAATGGTGGTGCTGCCGATGAGCTAACCAAACGCTTCTA
TTTAGACGCTGTGCTCAAGTCCCAGCAACAAAGTCCTCCGCCGACCACCA
AACTACCGCCACACTCCAAGCAGGATTACTCAATTTCAGCTCTGGTCACA
CCAAACTCGGAAAGTGGCAGGGAGAGAGTGAAAAGTCGCCAGAACGAAGA
GGACGACGAGGCGAGAGCGGATGGAATTATTGATGGCGCCGAGCACGACG
ATGAGGAGGAGGATCTGGTGGTGTCCATGACGCCACCCCACTCACCCGCT
CAACAAGAAGAGCGAACCCCAGCCGGCGAGGATCCCAGACCCAGTCCCGG
TCAAGATAATCCCATTGATCTGAGCATGAAGACCACCGGCAGTTCCCTGA
GCAGTAAAAGTAGTAGCCCAGAAATCGAACCAGAAACCGAGATCTCTAGC
GATGTAGAAAAGAACGATACAGATGATGACGATGAGGATCTGAAAGTAAC
GCCTGAAGAGGAGATATCAGTTCGAGAAACGGCTGATCCGGAGATAGAGG
AAGATCACTCCAGCACCACAGAGACAGCAAAGACCAGCATTGAAAATACC
CACAATAACAACAACAGTATCAGCAACAACAATAACAATAATAATAATAA
TAATAATAGTATCCTAAGCGATAGCGAGGCCAGTGAAACGATCAAGAGGA
AACTGGACGAACTCATAGAGGCCAGCAGTGAGAATGGAAAACGTCTGAGG
TTGGAAGCCCCCGTCAAAGTGGCCACCTCGAATGCCTTGGATCTAACCAC
TAAGGTCTGAAAGCTTTCTAGACCAT
BS01262.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knrl-RB | 1944 | CG4761-PB | 1..1944 | 17..1960 | 9720 | 100 | Plus |
| knrl-RA | 1944 | CG4761-PA | 1..1944 | 17..1960 | 9720 | 100 | Plus |
| kni-RB | 1305 | CG4717-PB | 15..296 | 43..324 | 735 | 84 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knrl-RB | 2925 | CG4761-RB | 965..2910 | 17..1962 | 9730 | 100 | Plus |
| knrl-RA | 3909 | CG4761-RA | 965..2910 | 17..1962 | 9730 | 100 | Plus |
| kni-RB | 1911 | CG4717-RB | 115..396 | 43..324 | 735 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20598140..20599982 | 1962..120 | 9215 | 100 | Minus |
| 3L | 28110227 | 3L | 20693845..20694049 | 324..120 | 515 | 83.4 | Minus |
| 3L | 28110227 | 3L | 21816276..21816484 | 120..328 | 475 | 81.8 | Plus |
| 3L | 28110227 | 3L | 20602193..20602271 | 121..43 | 395 | 100 | Minus |
| 3L | 28110227 | 3L | 20694263..20694341 | 121..43 | 230 | 86.1 | Minus |
| 3L | 28110227 | 3L | 21814778..21814856 | 43..121 | 200 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:34:58 has no hits.
BS01262.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:27 Download gff for
BS01262.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 1..1944 | 17..1960 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:04 Download gff for
BS01262.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 842..2784 | 17..1959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:09 Download gff for
BS01262.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 965..2907 | 17..1959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:27 Download gff for
BS01262.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 838..2794 | 9..1970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:10 Download gff for
BS01262.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 965..2907 | 17..1959 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:10 Download gff for
BS01262.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20598143..20599980 | 122..1959 | 100 | <- | Minus |
| 3L | 20602193..20602270 | 44..121 | 100 | <- | Minus |
| 3L | 20617388..20617414 | 17..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:09 Download gff for
BS01262.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20591243..20593080 | 122..1959 | 100 | <- | Minus |
| arm_3L | 20595293..20595370 | 44..121 | 100 | <- | Minus |
| arm_3L | 20610488..20610514 | 17..43 | 100 | | Minus |
BS01262.pep Sequence
Translation from 16 to 1959
> BS01262.pep
MMNQDNPYAMNQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLSSISD
CKNNGECIINKKNRTACKACRLKKCLMVGMSKSGSRYGRRSNWFKIHCLL
QEQQQQAVAAMAAHHNSQQAGGGSSGGSGGGQGMPNGVKGMSGVPPPAAA
AAALGMLGHPGGYPGLYAVANAGGSSRSKEELMMLGLDGSVEYGSHKHPV
VASPSVSSPDSHNSDSSVEVSSVRGNPLLHLGGKSNSGGSSSGADGSHSG
GGGGGGGGVTPGRPPQMRKDLSPFLPLPFPGLASMPVMPPPAFLPPSHLL
FPGYHPALYSHHQGLLKPTPEQQQAAVAAAAVQHLFNSSGAGQRFAPGTS
PFANHQQHHKEEDQPAPARSPSTHANNNHLLTNGGAADELTKRFYLDAVL
KSQQQSPPPTTKLPPHSKQDYSISALVTPNSESGRERVKSRQNEEDDEAR
ADGIIDGAEHDDEEEDLVVSMTPPHSPAQQEERTPAGEDPRPSPGQDNPI
DLSMKTTGSSLSSKSSSPEIEPETEISSDVEKNDTDDDDEDLKVTPEEEI
SVRETADPEIEEDHSSTTETAKTSIENTHNNNNSISNNNNNNNNNNNSIL
SDSEASETIKRKLDELIEASSENGKRLRLEAPVKVATSNALDLTTKV*
BS01262.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knrl-PB | 647 | CG4761-PB | 1..647 | 1..647 | 3415 | 100 | Plus |
| knrl-PA | 647 | CG4761-PA | 1..647 | 1..647 | 3415 | 100 | Plus |
| eg-PA | 373 | CG7383-PA | 1..114 | 10..134 | 516 | 74.4 | Plus |
| eg-PB | 373 | CG7383-PB | 1..114 | 10..134 | 516 | 74.4 | Plus |
| kni-PA | 429 | CG4717-PA | 1..116 | 10..128 | 503 | 78.2 | Plus |
