Clone Sequence Records
BS01264.3prime Sequence
835 bp (806 high quality bases) assembled on 2005-11-29
> BS01264.3prime
ATGGTCTAGAAAGCTTCTAGATTTCCTGTTTCGGCTTGTTTTGCGTCGAG
GCGTTGCGCGAAATCTTCAGGATGTTGGGTGGCTTGGGTTGGTTTTTGTC
CGCCTCGTATTGGGCGCGATGCAATCGCTGGCGATGCTTGTACATGTTGG
CGGAGCAGAAGAATGTCATCGGGCAGTTGGGACAGGTGTAGAGTACTTCA
CCCGTATGAGTGGATGTGTGTTCCTTGAGTTCCTGCGGCCGCTTGAAAGC
CTTTTCGCACATGGTGCACTTAAACTTGCGCTCGCACTCGTGATTGTGGT
AGATGTGACGCCGGAGAGCCCTTGCATTTGGGGACACCTTAGCGCATATA
TGGCAGCGATGCTCGCCGGCACTCTCTACGTGTATGCTCTTCATGTGCTG
CTTCAGGCCGGTCATGCCCTTTAGCCAAGCGCCGCATATCTGGCACTGCT
GTAGCTCCGGTTCCGGACGTGGCTTATCCGAGTGCATCAGCTCCTGGTGC
TTCTTCAGGATGATCTTGGTGCGCATCTGCTTGCCGCACTTGTCGCAGAT
TATGGTACTCTCTGGGTCATGCATAGAGCTCATGTGGTTTTTCAGCTTGC
GCTCGGTGAGAAATTTTTTGTTGCACTCGGAACAGGTGAACTTGAACTCG
GACTTGGGCACATGCTTGTTAAGCTTGTGGTAGTCTATGGCCGTCTTGCT
AAGGAAGGTCTTCGAGCAGAGGTCGCAGCTAAACGTAAGCTTAACGGCGG
GATCCATGTGAACCTGCTGGTGCGACTCCAGGTGACGGGAATTTTGGAAT
GACTTCTCACAGACGCTGCACTTAAAGTGATCAGG
BS01264.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4282-PA | 1959 | CG4282-RA | 1141..1959 | 835..17 | 4095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4282-RA | 2393 | CG4282-RA | 1287..2105 | 835..17 | 4095 | 100 | Minus |
| CG4707-RA | 2248 | CG4707-RA | 1460..2070 | 668..58 | 480 | 73.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16323854..16324245 | 614..223 | 1960 | 100 | Minus |
| 2R | 25286936 | 2R | 16323571..16323791 | 835..615 | 1105 | 100 | Minus |
| 2R | 25286936 | 2R | 16324305..16324513 | 225..17 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 24604773..24604940 | 58..225 | 240 | 76.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:14:53 has no hits.
BS01264.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:12 Download gff for
BS01264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-PA | 1141..1959 | 17..835 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:29 Download gff for
BS01264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-PA | 1141..1959 | 17..835 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:08:52 Download gff for
BS01264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 1287..2105 | 17..835 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:36 Download gff for
BS01264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 1287..2105 | 17..835 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:36 Download gff for
BS01264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16324307..16324513 | 17..223 | 100 | | Minus |
| 2R | 16323854..16324244 | 224..614 | 100 | -> | Minus |
| 2R | 16323571..16323791 | 615..835 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:08:52 Download gff for
BS01264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12211076..12211296 | 615..835 | 100 | -> | Minus |
| arm_2R | 12211359..12211749 | 224..614 | 100 | -> | Minus |
| arm_2R | 12211812..12212018 | 17..223 | 100 | | Minus |
BS01264.5prime Sequence
885 bp (714 high quality bases) assembled on 2005-11-29
> BS01264.5prime
GAAGTTATCAGTCGACATGGATTCCTCTCCTAGCTGTTTACTCTGCATGT
GCGAGTATCCGGCCATGATGGGGGACTATATAGATGTACACTCCGCGCGC
GGCGACCAATTGGAGGTGACTACGATCGTCAACCAGCACTTCCCCGTCCA
GATCTCCAAGGAAAGCGACGAAAGGATATGCGGCCGCTGCTGGAAAATCG
TCTCAGACTTCCACACTTTACACGAGTTCGTCAGTGCAGCGCAGAGCTCT
TTACAGGAAACAAAAGTGGCGCTCATGGAGGATGATCCCCTAACACAGGA
AACTACGTCCTTTCCGGAGATTATAAAACTGGCTACTCAGGAGGAGGAAG
GGGTGACGGAACCACAGGAACTTGGCGGTCGGAACTTCTTTTACCCAGAG
ATTAAGATTGAGGAACATGAATTGGATACTCTTCCCCGCATCGAGATCCT
AGAGAGATCGGCCAACACCCAGGAAAACCAGGACCAACTTGAGGGTGCAG
CCAGACGCCTTAGGAAGCGTTTGAAGGCAGAGGATGGATCAAGTGTTGAC
AAGGATAAGGACGAGGATGGAGTAGAAGAGACTGCAGAACCTGCGCCGCC
TAAAAAGCGACGTGGTCGCCCAAGGAAATCAGACGCTGCCGTTGCCCCGC
CCCAAAAACCTAAAGAAGACATTCAACTTGACCTTAAGGCAGAAGAGCTT
GACGAGTTCGTAGATGAGGAGACGGACCCTGACTTCTCATGCCTGGTGCC
TAGCGATAACTCCTCCGAGGACGATGGAGGCAGCGATGGCTTCGACTCAG
ACTCAGACTTTGAACTGGACAATGGAAAGCAAGAGTTTGCCGTGCTGCCA
AAAAGAACAGTAGTACGCCCCAAGAAATACAGGAA
BS01264.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4282-PA | 1959 | CG4282-RA | 1..865 | 17..881 | 4325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4282-RA | 2393 | CG4282-RA | 147..1015 | 17..885 | 4330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16322434..16323299 | 20..885 | 4315 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:40:13 has no hits.
BS01264.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:13 Download gff for
BS01264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:30 Download gff for
BS01264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:09:36 Download gff for
BS01264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 141..1015 | 7..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:47 Download gff for
BS01264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 141..1015 | 7..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:47 Download gff for
BS01264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16322431..16323299 | 17..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:09:36 Download gff for
BS01264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12209936..12210804 | 17..885 | 99 | | Plus |
BS01264.complete Sequence
1991 bp (1991 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634578
> BS01264.complete
GAAGTTATCAGTCGACATGGATTCCTCTCCTAGCTGTTTACTCTGCATGT
GCGAGTATCCGGCCATGATGGGGGACTATATAGATGTACACTCCGCGCGC
GGCGACCAATTGGAGGTGACTACGATCGTCAACCAGCACTTCCCCGTCCA
GATCTCCAAGGAAAGCGACGAAAGGATATGCGGCCGCTGCTGGAAAATCG
TCTCAGACTTCCACACTTTACACGAGTTCGTCAGTGCAGCGCAGAGCTCT
TTACAGGAAACAAAAGTGGCGCTCATGGAGGATGATCCCCTAACACAGGA
AACTACGTCCTTTCCGGAGATTATAAAACTGGCTACTCAGGAGGAGGAAG
GGGTGACGGAACCACAGGAACTTGGCGGTCGGAACTTCTTTTACCCAGAG
ATTAAGATTGAGGAACATGAATTGGATACTCTTCCCCGCATCGAGATCCT
AGAGAGATCGGCCAACACCCAGGAAAACCAGGACCAACTTGAGGGTGCAG
CCAGACGCCTTAGGAAGCGTTTGAAGGCAGAGGATGGATCAAGTGTTGAC
AAGGATAAGGACGAGGATGGAGTAGAAGAGACTGCAGAACCTGCGCCGCC
TAAAAAGCGACGTGGTCGCCCAAGGAAATCAGACGCTGCCGTTGCCCCGC
CCCAAAAACCTAAAGAAGACATTCAACTTGACCTTAAGGCAGAAGAGCTT
GACGAGTTCGTAGATGAGGAGACGGACCCTGACTTCTCATGCCTGGTGCC
TAGCGATAACTCCTCCGAGGACGATGGAGGCAGCGATGGCTTCGACTCAG
ACTCAGACTTTGAACTGGACAATGGAAAGCAAGAGTTTGCCGTGCTGCCA
AAAAGAACAGTAGTACGCCCCAAGAAATACAAGAAGCGGACGAAACCGGC
GGAGCCGAAAGTCCGCATGTCCCGCGAACTGCTGGAGCAGCGCAAAAAGC
AGCAGGAAGAATACGACGTCATCATCGCCAAGTTCTTTACCAGCGTGCTG
CCGTGTGCCATCTGCAATCTGCTGGTGCACAACTTCACCGAGATGCAGCG
TCATCACCGACTGACCCATCAAGTGGATCCCGGCTACATGATGTGCTGCG
GCCGCAAGTTCACGCAGCGCAAAGTGCTGGCCGAGCATGTACTCGTCCAC
TGGAATCCTGATCACTTTAAGTGCAGCGTCTGTGAGAAGTCATTCCAAAA
TTCCCGTCACCTGGAGTCGCACCAGCAGGTTCACATGGATCCCGCCGTTA
AGCTTACGTTTAGCTGCGACCTCTGCTCGAAGACCTTCCTTAGCAAGACG
GCCATAGACTACCACAAGCTTAACAAGCATGTGCCCAAGTCCGAGTTCAA
GTTCACCTGTTCCGAGTGCAACAAAAAATTTCTCACCGAGCGCAAGCTGA
AAAACCACATGAGCTCTATGCATGACCCAGAGAGTACCATAATCTGCGAC
AAGTGCGGCAAGCAGATGCGCACCAAGATCATCCTGAAGAAGCACCAGGA
GCTGATGCACTCGGATAAGCCACGTCCGGAACCGGAGCTACAGCAGTGCC
AGATATGCGGCGCTTGGCTAAAGGGCATGACCGGCCTGAAGCAGCACATG
AAGAGCATACACGTAGAGAGTGCCGGCGAGCATCGCTGCCATATATGCGC
TAAGGTGTCCCCAAATGCAAGGGCTCTCCGGCGTCACATCTACCACAATC
ACGAGTGCGAGCGCAAGTTTAAGTGCACCATGTGCGAAAAGGCTTTCAAG
CGGCCGCAGGAACTCAAGGAACACACATCCACTCATACGGGTGAAGTACT
CTACACCTGTCCCAACTGCCCGATGACATTCTTCTGCTCCGCCAACATGT
ACAAGCATCGCCAGCGATTGCATCGCGCCCAATACGAGGCGGACAAAAAC
CAACCCAAGCCACCCAACATCCTGAAGATTTCGCGCAACGCCTCGACGCA
AAACAAGCCGAAACAGGAAATCTAGAAGCTTTCTAGACCAT
BS01264.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4282-RA | 1959 | CG4282-PA | 1..1959 | 17..1975 | 9795 | 100 | Plus |
| CG4707-RA | 2022 | CG4707-PA | 1338..1948 | 1324..1934 | 475 | 71.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4282-RA | 2393 | CG4282-RA | 147..2105 | 17..1975 | 9795 | 100 | Plus |
| CG4707-RA | 2248 | CG4707-RA | 1460..2070 | 1324..1934 | 475 | 71.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16322434..16323791 | 20..1377 | 6790 | 100 | Plus |
| 2R | 25286936 | 2R | 16323854..16324245 | 1378..1769 | 1960 | 100 | Plus |
| 2R | 25286936 | 2R | 16324305..16324513 | 1767..1975 | 1045 | 100 | Plus |
| 2R | 25286936 | 2R | 24604773..24604940 | 1934..1767 | 240 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:16:44 has no hits.
BS01264.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:28 Download gff for
BS01264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 1..1959 | 17..1975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:40 Download gff for
BS01264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 139..2103 | 7..1975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:00 Download gff for
BS01264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 147..2105 | 17..1975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:28 Download gff for
BS01264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 139..2103 | 7..1975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:35 Download gff for
BS01264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 147..2105 | 17..1975 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:35 Download gff for
BS01264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16322431..16323791 | 17..1377 | 99 | -> | Plus |
| 2R | 16323854..16324244 | 1378..1768 | 100 | -> | Plus |
| 2R | 16324307..16324513 | 1769..1975 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:00 Download gff for
BS01264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12209936..12211296 | 17..1377 | 99 | -> | Plus |
| arm_2R | 12211359..12211749 | 1378..1768 | 100 | -> | Plus |
| arm_2R | 12211812..12212018 | 1769..1975 | 100 | | Plus |
BS01264.pep Sequence
Translation from 16 to 1974
> BS01264.pep
MDSSPSCLLCMCEYPAMMGDYIDVHSARGDQLEVTTIVNQHFPVQISKES
DERICGRCWKIVSDFHTLHEFVSAAQSSLQETKVALMEDDPLTQETTSFP
EIIKLATQEEEGVTEPQELGGRNFFYPEIKIEEHELDTLPRIEILERSAN
TQENQDQLEGAARRLRKRLKAEDGSSVDKDKDEDGVEETAEPAPPKKRRG
RPRKSDAAVAPPQKPKEDIQLDLKAEELDEFVDEETDPDFSCLVPSDNSS
EDDGGSDGFDSDSDFELDNGKQEFAVLPKRTVVRPKKYKKRTKPAEPKVR
MSRELLEQRKKQQEEYDVIIAKFFTSVLPCAICNLLVHNFTEMQRHHRLT
HQVDPGYMMCCGRKFTQRKVLAEHVLVHWNPDHFKCSVCEKSFQNSRHLE
SHQQVHMDPAVKLTFSCDLCSKTFLSKTAIDYHKLNKHVPKSEFKFTCSE
CNKKFLTERKLKNHMSSMHDPESTIICDKCGKQMRTKIILKKHQELMHSD
KPRPEPELQQCQICGAWLKGMTGLKQHMKSIHVESAGEHRCHICAKVSPN
ARALRRHIYHNHECERKFKCTMCEKAFKRPQELKEHTSTHTGEVLYTCPN
CPMTFFCSANMYKHRQRLHRAQYEADKNQPKPPNILKISRNASTQNKPKQ
EI*
BS01264.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4282-PA | 652 | CG4282-PA | 1..652 | 1..652 | 3512 | 100 | Plus |
| CG4707-PA | 673 | CG4707-PA | 4..660 | 7..650 | 1569 | 46.4 | Plus |
| CG8388-PA | 572 | CG8388-PA | 108..551 | 193..647 | 692 | 34.3 | Plus |
| grau-PA | 570 | CG33133-PA | 125..532 | 209..624 | 559 | 32.1 | Plus |
| CG11696-PA | 664 | CG11696-PA | 53..616 | 54..650 | 547 | 29.3 | Plus |
