Clone Sequence Records
BS01265.3prime Sequence
866 bp (755 high quality bases) assembled on 2005-11-29
> BS01265.3prime
ATGGTCTAGAAAGCTTTTACTTTTCGTATGTGTCTTGCTGCTTCTCCAGT
GCCAGTTGGTTCTTCAAATCCTTGAGCTCCTTCTTGGCGACCTTCGCAAT
TTCCTGCCGTAGTGCCTCAACCTTTTGTTTACGGTCATTTCTCTCCCCCA
GAGGCTTCGCCGGCTTTTCGTCATGGACTTTTTGGTGTCGGATGAGCGCC
GCTACCTGGCGAAAGCGATTGCCACACGTCTTACACTCGAAGGGCTTTTC
GCCAGTGTGTATCCACTCGTGTTGCTTCACGGATTGCGAGTTGGCAAAGC
GACGGGAGCAGAAACGGCACTCAAAGTCCTTGACTTTTTCGTGGACGCTC
TTGTAGTGGCGCTTCATGTTGCCTATGCTCTTGAATCCCTGACTGCAGCT
GGGACACAAGTACATACCCTCCTTTTGCACAAACTGAATCTCGTCTGTGG
GATTCACTGCGGTCCCTGCCAATAGGGCCACATCAACTTGCTCTACGCGG
CGGGGATTCTTAGGAATGCTGGCTACGGATTCGGCGTAAACCTTCAGCAG
CTGATGTGAGTCCACTTGAGTGTCACTGGCATCGCCATTTACTTGCACCT
GTTTATAAGTTTCCAGAGCCCTTTCCACGCTCTTCTCATGAATCTTCAGA
TGATTGTTGAGACTCTCCGAATGCAGGAACTTTTTGTCACAAACCTTGCA
TTCGCAGCGCTTCTCACCAGTGTGCGCCATCTCGTGTATTTTGCAGGCGT
ATGCTTTCCCGAACGTCTTTCCACAGTACTGGCAAGCAAAATTCCGGATT
TTCTCATGTACGATCTTAACATGGCTCTCTAGCACCCGCTTCGTGTGGGT
GGCATAGTCGCAGATG
BS01265.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7386-PA | 1989 | CG7386-RA | 1140..1989 | 866..17 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7386-RA | 2247 | CG7386-RA | 1209..2058 | 866..17 | 4250 | 100 | Minus |
CG10274-RB | 3034 | CG10274-RB | 1471..1658 | 819..632 | 340 | 78.7 | Minus |
CG10274-RB | 3034 | CG10274-RB | 1987..2185 | 393..195 | 260 | 76 | Minus |
D19A-RA | 3233 | CG10269-RA | 2134..2299 | 370..205 | 215 | 76 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6191181..6191860 | 696..17 | 3400 | 100 | Minus |
3L | 28110227 | 3L | 6190953..6191126 | 866..693 | 870 | 100 | Minus |
3L | 28110227 | 3L | 6179526..6179724 | 195..393 | 260 | 75.4 | Plus |
3L | 28110227 | 3L | 6180179..6180305 | 693..819 | 260 | 80.3 | Plus |
3L | 28110227 | 3L | 6186764..6186929 | 205..370 | 200 | 74.7 | Plus |
3L | 28110227 | 3L | 6187359..6187454 | 695..790 | 195 | 80.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:39:24 has no hits.
BS01265.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:14 Download gff for
BS01265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-PA | 1140..1989 | 17..866 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:31 Download gff for
BS01265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-PA | 1140..1989 | 17..866 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:19 Download gff for
BS01265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-RA | 1209..2061 | 14..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:09:27 Download gff for
BS01265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-RA | 1209..2061 | 14..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:09:27 Download gff for
BS01265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6190953..6191124 | 695..866 | 100 | -> | Minus |
3L | 6191183..6191863 | 14..694 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:19 Download gff for
BS01265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6184053..6184224 | 695..866 | 100 | -> | Minus |
arm_3L | 6184283..6184963 | 14..694 | 99 | | Minus |
BS01265.5prime Sequence
766 bp (763 high quality bases) assembled on 2005-11-29
> BS01265.5prime
GAAGTTATCAGTCGACATGGAGCTCAAGTACTCCGTCCAATCGCTTTGTC
TCACCTGCCTTGTCCACCTGGAGCATGGTGCTGGACACGATCTCTTCGTG
GTTCCAGATCTGTTCCAGAAGCTCAGGGCATGCACTTCGTTTGATGCGGA
TCAAAACGACGGTTTCCCGAGAAACCTGTGCACCCAATGTTTCACCAAGC
TGAACGACCTGCATGACTTCCGCGAACTGTGCGCAGAATCCATTAAACGT
CTAAAGGAAATGGTGACCAGCCAGAGGAATATGCCCATGGGTGTATTCGA
ATCTATAGCTGATGATTCTGAGGCACCTGAAAGGCCAGAGGAGCCGGCCA
GTTTCGATCCGCTGCTGAATAACAAACTAGAGATGATTGACAACGAGGAG
GATGTGTTCAAGTTGCTGGAAAAAGTTGACAAGGAACTAGAGGAGCATTC
AAGGGACCAAAGCGAGGAGCACTTCTCCAGTGCAGAGCACAACGGACTGG
AGGAGGAGAAAAAGGAGTCGGAAGGGTTCAACAGCGACGATGAGCAGGCC
ATGGGGCAGCGACGGATTGCGAACGACAAGCGTAAACTGTTTCGCCTTAT
GAGCTGTTCCATCTGCCAGCAAAAGTTCAAAAAGCAATCAAAGTTCGAGG
AGCACATGAAGCACCACAATGACCTGTTGCCGTTTCAGTGTCAGGAGGAA
AGCTGCCGAAAGGGCTTCACCACAGCCGGTGCACTGCGTTTGCACGTGGA
CTATGCGCACTCCAAG
BS01265.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7386-PA | 1989 | CG7386-RA | 1..750 | 17..766 | 3650 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7386-RA | 2247 | CG7386-RA | 70..819 | 17..766 | 3690 | 99.5 | Plus |
CG10274-RB | 3034 | CG10274-RB | 453..535 | 353..435 | 220 | 84.3 | Plus |
D19A-RA | 3233 | CG10269-RA | 282..353 | 148..219 | 210 | 86.1 | Plus |
CG10274-RB | 3034 | CG10274-RB | 914..991 | 646..723 | 180 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:45:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6189814..6190563 | 17..766 | 3690 | 99.5 | Plus |
3L | 28110227 | 3L | 6181295..6181377 | 435..353 | 220 | 84.3 | Minus |
3L | 28110227 | 3L | 6188771..6188842 | 219..148 | 210 | 86.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:45:08 has no hits.
BS01265.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:15 Download gff for
BS01265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-PA | 1..750 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:32 Download gff for
BS01265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-PA | 1..750 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:52:53 Download gff for
BS01265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-RA | 70..819 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:15:16 Download gff for
BS01265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-RA | 70..819 | 17..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:15:16 Download gff for
BS01265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6189814..6190563 | 17..766 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:52:53 Download gff for
BS01265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6182914..6183663 | 17..766 | 99 | | Plus |
BS01265.complete Sequence
2021 bp assembled on 2007-10-05
> BS01265.complete
GAAGTTATCAGTCGACATGGAGCTCAAGTACTCCGTCCAATCGCTTTGTC
TCACCTGCCTTGTCCACCTGGAGCATGGTGCTGGACACGATCTCTTCGTG
GTTCCAGATCTGTTCCAGAAGCTCAGGGCATGCACTTCGTTTGATGCGGA
TCAAAACGACGGTTTCCCGAGAAACCTGTGCACCCAATGTTTCACCAAGC
TGAACGACCTGCATGACTTCCGCGAACTGTGCGCAGAATCCATTAAACGT
CTAAAGGAAATGGTGACCAGCCAGAGGAATATGCCCATGGGTGTATTCGA
ATCTATAGCTGATGATTCTGAGGCACCTGAAAGGCCAGAGGAGCCGGCCA
GTTTCGATCCGCTGCTGAATAACAAACTAGAGATGATTGACAACGAGGAG
GATGTGTTCAAGTTGCTGGAAAAAGTTGACAAGGAACTAGAGGAGCATTC
AAGGGACCAAAGCGAGGAGCACTTCTCCAGTGCAGAGCACAACGGACTGG
AGGAGGAGAAAAAGGAGTCGGAAGGGTTCAACAGCGACGATGAGCAGGCC
ATGGGGCAGCGACGGATTGCGAACGACAAGCGTAAACTGTTTCGCCTTAT
GAGCTGTTCCATCTGCCAGCAAAAGTTCAAAAAGCAATCAAAGTTCGAGG
AGCACATGAAGCACCACAATGACCTGTTGCCGTTTCAGTGTCAGGAGGAA
AGCTGCCGAAAGGGCTTCACCACAGCCGGTGCACTGCGTTTGCACGTGGA
CTATGCGCACTCCAAGAAGGAGGATACGGTTCCCTGCACCGTGGAGGGCT
GTCAATTGGTTTTTTCCCGTCTCCGGCTGCTGACCATTCACTTGAAAAAG
GTTCACAACCAGGCGAGGGTTATTGCTCCGCGGGGTGAACAGTCTTGCAA
GGAATGCGGCGTGGTGTTTCGTTGCCCGGTGGCTATGAAGAAGCACATGT
ACACGCACACGGGCGAAGAGCTTCCCTATCCGTGTACCATTTGCGGCAAG
GGCTTTTACATCAATAGTGCCCTAAAGAATCATCTTCTCCGGCATGCTGG
CATCAAGAACTACGTGTGTCAGTACTGCGGAGTGCGAAAGACCACCCGCC
AGGAATGGAGTAAGCACATTCTGATCCACACCCAACGGAACCAGTTTAAG
TGCCGCATCTGCGACTATGCCACCCACACGAAGCGGGTGCTAGAGAGCCA
TGTTAAGATCGTACATGAGAAAATCCGGAATTTTGCTTGCCAGTACTGTG
GAAAGACGTTCGGGAAAGCATACGCCTGCAAAATACACGAGATGGCGCAC
ACTGGTGAGAAGCGCTGCGAATGCAAGGTTTGTGACAAAAAGTTCCTGCA
TTCGGAGAGTCTCAACAATCATCTGAAGATTCATGAGAAGAGCGTGGAAA
GGGCTCTGGAAACTTATAAACAGGTGCAAGTAAATGGCGATGCCAGTGAC
ACTCAAGTGGACTCACATCAGCTGCTGAAGGTTTACGCCGAATCCGTAGC
CAGCATTCCTAAGAATCCCCGCCGCGTAGAGCAAGTTGATGTGGCCCTAT
TGGCAGGGACCGCAGTGAATCCCACAGACGAGATTCAGTTTGTGCAAAAG
GAGGGTATGTACTTGTGTCCCAGCTGCAGTCAGGGATTCAAGAGCATAGG
CAACATGAAGCGCCACTACAAGAGCGTCCACGAAAAAGTCAAGGACTTTG
AGTGCCGTTTCTGCTCCCGTCGCTTTGCCAACTCGCAATCCGTGAAGCAA
CACGAGTGGATACACACTGGCGAAAAGCCCTTCGAGTGTAAGACGTGTGG
CAATCGCTTTCGCCAGGTAGCGGCGCTCATCCGACACCAAAAAGTCCATG
ACGAAAAGCCGGCGAAGCCTCTGGGGGAGAGAAATGACCGTAAACAAAAG
GTTGAGGCACTACGGCAGGAAATTGCGAAGGTCGCCAAGAAGGAGCTCAA
GGATTTGAAGAACCAACTGGCACTGGAGAAGCAGCAAGACACATACGAAA
AGTAAAAGCTTTCTAGACCAT
BS01265.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7386-RA | 1989 | CG7386-PA | 1..1989 | 17..2005 | 9885 | 99.8 | Plus |
CG10274-RB | 2592 | CG10274-PB | 1144..1596 | 938..1390 | 615 | 75.7 | Plus |
D19A-RA | 2538 | CG10269-PA | 1171..1560 | 938..1327 | 465 | 74.6 | Plus |
CG10274-RB | 2592 | CG10274-PB | 1925..2123 | 1629..1827 | 260 | 75.4 | Plus |
CG10274-RB | 2592 | CG10274-PB | 391..473 | 353..435 | 220 | 84.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7386-RA | 2247 | CG7386-RA | 70..2058 | 17..2005 | 9885 | 99.8 | Plus |
CG10274-RB | 3034 | CG10274-RB | 1206..1658 | 938..1390 | 615 | 75.7 | Plus |
D19A-RA | 3233 | CG10269-RA | 1315..1704 | 938..1327 | 465 | 74.6 | Plus |
CG10274-RB | 3034 | CG10274-RB | 1987..2185 | 1629..1827 | 260 | 75.4 | Plus |
CG10274-RB | 3034 | CG10274-RB | 453..535 | 353..435 | 220 | 84.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6189814..6191126 | 17..1329 | 6505 | 99.7 | Plus |
3L | 28110227 | 3L | 6191181..6191860 | 1326..2005 | 3400 | 100 | Plus |
3L | 28110227 | 3L | 6180179..6180570 | 1329..938 | 535 | 75.8 | Minus |
3L | 28110227 | 3L | 6187359..6187748 | 1327..938 | 465 | 74.6 | Minus |
3L | 28110227 | 3L | 6183266..6183655 | 1327..938 | 435 | 74.1 | Minus |
3L | 28110227 | 3L | 6179526..6179724 | 1827..1629 | 260 | 75.4 | Minus |
3L | 28110227 | 3L | 6181295..6181377 | 435..353 | 220 | 84.3 | Minus |
3L | 28110227 | 3L | 6188771..6188842 | 219..148 | 210 | 86.1 | Minus |
3L | 28110227 | 3L | 6186764..6186929 | 1817..1652 | 200 | 74.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:01:10 has no hits.
BS01265.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:07 Download gff for
BS01265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-RA | 1..1989 | 17..2005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:50:40 Download gff for
BS01265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-RA | 58..2049 | 17..2008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:36 Download gff for
BS01265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-RA | 70..2050 | 17..1997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:08 Download gff for
BS01265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-RA | 58..2049 | 17..2008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:28 Download gff for
BS01265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-RA | 70..2050 | 17..1997 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:28 Download gff for
BS01265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6191183..6191852 | 1328..1997 | 100 | | Plus |
3L | 6189814..6191124 | 17..1327 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:36 Download gff for
BS01265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6184283..6184952 | 1328..1997 | 100 | | Plus |
arm_3L | 6182914..6184224 | 17..1327 | 99 | -> | Plus |
BS01265.pep Sequence
Translation from 16 to 2004
> BS01265.pep
MELKYSVQSLCLTCLVHLEHGAGHDLFVVPDLFQKLRACTSFDADQNDGF
PRNLCTQCFTKLNDLHDFRELCAESIKRLKEMVTSQRNMPMGVFESIADD
SEAPERPEEPASFDPLLNNKLEMIDNEEDVFKLLEKVDKELEEHSRDQSE
EHFSSAEHNGLEEEKKESEGFNSDDEQAMGQRRIANDKRKLFRLMSCSIC
QQKFKKQSKFEEHMKHHNDLLPFQCQEESCRKGFTTAGALRLHVDYAHSK
KEDTVPCTVEGCQLVFSRLRLLTIHLKKVHNQARVIAPRGEQSCKECGVV
FRCPVAMKKHMYTHTGEELPYPCTICGKGFYINSALKNHLLRHAGIKNYV
CQYCGVRKTTRQEWSKHILIHTQRNQFKCRICDYATHTKRVLESHVKIVH
EKIRNFACQYCGKTFGKAYACKIHEMAHTGEKRCECKVCDKKFLHSESLN
NHLKIHEKSVERALETYKQVQVNGDASDTQVDSHQLLKVYAESVASIPKN
PRRVEQVDVALLAGTAVNPTDEIQFVQKEGMYLCPSCSQGFKSIGNMKRH
YKSVHEKVKDFECRFCSRRFANSQSVKQHEWIHTGEKPFECKTCGNRFRQ
VAALIRHQKVHDEKPAKPLGERNDRKQKVEALRQEIAKVAKKELKDLKNQ
LALEKQQDTYEK*
BS01265.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7386-PA | 662 | CG7386-PA | 1..662 | 1..662 | 3546 | 99.7 | Plus |
CG10274-PB | 863 | CG10274-PB | 9..780 | 4..662 | 1894 | 48.8 | Plus |
D19B-PA | 774 | CG10270-PA | 4..683 | 2..631 | 1676 | 47.3 | Plus |
D19A-PA | 845 | CG10269-PA | 6..823 | 4..661 | 1653 | 41.8 | Plus |
CG10147-PB | 448 | CG10147-PB | 21..430 | 24..457 | 560 | 30.3 | Plus |