Clone Sequence Records
BS01269.3prime Sequence
877 bp (755 high quality bases) assembled on 2005-11-29
> BS01269.3prime
ATGGTCTAGAAAGCTTTTAGGATGTTAGGGACGTGCCATCCAGCAGCACC
GACGCCACCTCCTCGTTCTGTTCTACGTACACTAGACGAGGATCCTCGCC
AAACTCCAGTCGCCCGTATCTGGCCACCAGCGGTGTCTTGTTGTTGCTCA
CTTGCGGTGCGCGCGGCCACTTCCTTTTGGGCTTCGTGTGCGTCAGCATG
TGGGACTTGAGGTTCGTTGACTGGGCGAAGCACTTGGAGCAGCCATCAAT
GGGACAGTGGTAGGGCCTATCGCCAGTGTGTATCCGTACGTGGGTGCGCA
GATTGAAGTCCAGCGAGAAGCGCTTGCCGCACCCCTCAAAGGTGCACTCA
AAGGGCTTCTCGCCGGTGTGCACCAGCTGGTGGCGCTTTAGCTTGGAGCT
CTCTACAAAGCTCTTGCCGCAGACGTTGCACACATGACCGCGCGGTCCGT
GCGTGTGCATGTGCTTGCGCATGGCCGAGTGGTTGCGAAACTCCTTGTTG
CAGCCGCGATGGGTGCAGCGAAACTTTGGCTCCTCATCCTCTTCGCCGGC
CGCGCCAGCTGCTCCCATGGCATTACCAGCCGTCTGATTGGCCACTGCAG
TCGGTAATTTGGTTACAATTGTGGGTCGTTGGGGTCGGGCTGGATTGCTG
GAAGCCACTAGTGGCGGTGGGGGATTTGGTGTCGCCACCTGAGCCGCCGC
CGTGAGTTGCCTCTTTGTCACCTTTGACTGATTTCCCGCACTTTTCAGTC
GCACATTGGTGCTGCTGTTCTGGAGCACTAGTTTTGGGAGAGCCGGCTGT
GGGATCGGTACACATCCGTTGACCTTCGATAGCGCTACCGACACAGTGGC
TGGGACTGGTCCCGGTGTCTGTATCAG
BS01269.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3445-PA | 2010 | phol-RA | 1150..2010 | 877..17 | 4205 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phol-RB | 3384 | CG3445-RB | 1797..2657 | 877..17 | 4245 | 99.5 | Minus |
phol-RA | 3139 | CG3445-RA | 1797..2657 | 877..17 | 4245 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9453530..9454390 | 17..877 | 4245 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:14:37 has no hits.
BS01269.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:19 Download gff for
BS01269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phol-PA | 1150..2010 | 17..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:36 Download gff for
BS01269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3445-PA | 1150..2010 | 17..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:30:52 Download gff for
BS01269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phol-RA | 1797..2657 | 17..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:21 Download gff for
BS01269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phol-RA | 1797..2657 | 17..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:21 Download gff for
BS01269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9453530..9454390 | 17..877 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:30:52 Download gff for
BS01269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9446630..9447490 | 17..877 | 99 | | Plus |
BS01269.5prime Sequence
831 bp (797 high quality bases) assembled on 2005-11-29
> BS01269.5prime
GAAGTTATCAGTCGACATGACAAGTCATCATCATCACGTCGGCGTCGGAG
GGAACTTCCAGCCTCAACTGCATCAGATACGAGCGCCCATCGTGAAGAAT
CTATCGCTGGCCGCTGCGGCGGTACCGTTGCCCCTGCACTCCGCCCCGTC
GTCGGCATACTTCACTCATGCACACCAGCCTACGGCGGCTACCATAGTCG
AGCAAGATCCGTACACCGTTTTGGCGGGCGATCCGATGGGCGAGGAAAGC
GAGAGCTTCCTGATCGAGGAGATCATCGACGACTATGATGATGAGGCTAA
TATCGTCGTAGACTCAGGCGAATTCTTTGAGCACTATGAATACTATCCGG
TGGATCGGCTGGACAGACTTACCTCGGTCACGGTGGCTACGGCAGATGCA
CTGCCGCCGCCGATCATCATGCAGCAGACCAGCGACGATGAGGAATTCAT
CGAGGAGGATGGACAGCAGATGACATCCTCCTGCGATGGCGATGGCGATG
AGGATGATGAGGCTACCGCGCCGGCTACGACAAATGCCTTCGAGATTGCC
TCCGAGATGCTAACCACCATCGAGGCCACAAACATCAAGGAGGAGCAGCT
CGAGAGCGACTTCTATATGAAGGCGACCGAGGATTCAAACAGTTCGAATG
GCCAGCTGCAGGATTTTAAGCTATTTGGAAGCAGTCGCGTCGAGAGGCCC
ATGGGAAATTCAGCGGCCAAGCGCTGGAAGCAAACAAAGGTACCCATACG
CATAACGCAGGATGAGTTCAATGTCACCCTTTGGTCCTCGCTCAACTCGG
AGGATGAGGACGAGGAGGAGGAGTTGGAGGA
BS01269.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3445-PA | 2010 | phol-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phol-RB | 3384 | CG3445-RB | 648..1462 | 17..831 | 4075 | 100 | Plus |
phol-RA | 3139 | CG3445-RA | 648..1462 | 17..831 | 4075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9454725..9455539 | 831..17 | 4075 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:37:27 has no hits.
BS01269.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:20 Download gff for
BS01269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phol-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:38 Download gff for
BS01269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3445-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:30:16 Download gff for
BS01269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phol-RA | 640..1461 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:20:54 Download gff for
BS01269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phol-RA | 640..1461 | 9..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:20:54 Download gff for
BS01269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9454726..9455547 | 9..830 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:30:16 Download gff for
BS01269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9447826..9448647 | 9..830 | 99 | | Minus |
BS01269.complete Sequence
2042 bp (2042 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634579
> BS01269.complete
GAAGTTATCAGTCGACATGACAAGTCATCATCATCACGTCGGCGTCGGAG
GGAACTTCCAGCCTCAACTGCATCAGATACGAGCGCCCATCGTGAAGAAT
CTATCGCTGGCCGCTGCGGCGGTACCGTTGCCCCTGCACTCCGCCCCGTC
GTCGGCATACTTCACTCATGCACACCAGCCTACGGCGGCTACCATAGTCG
AGCAAGATCCGTACACCGTTTTGGCGGGCGATCCGATGGGCGAGGAAAGC
GAGAGCTTCCTGATCGAGGAGATCATCGACGACTATGATGATGAGGCTAA
TATCGTCGTAGACTCAGGCGAATTCTTTGAGCACTATGAATACTATCCGG
TGGATCGGCTGGACAGACTTACCTCGGTCACGGTGGCTACGGCAGATGCA
CTGCCGCCGCCGATCATCATGCAGCAGACCAGCGACGATGAGGAATTCAT
CGAGGAGGATGGACAGCAGATGACATCCTCCTGCGATGGCGATGGCGATG
AGGATGATGAGGCTACCGCGCCGGCTACGACAAATGCCTTCGAGATTGCC
TCCGAGATGCTAACCACCATCGAGGCCACAAACATCAAGGAGGAGCAGCT
CGAGAGCGACTTCTATATGAAGGCGACCGAGGATTCAAACAGTTCGAATG
GCCAGCTGCAGGATTTTAAGCTATTTGGAAGCAGTCGCGTCGAGAGGCCC
ATGGGAAATTCAGCGGCCAAGCGCTGGAAGCAAACAAAGGTACCCATACG
CATAACGCAGGATGAGTTCAATGTCACCCTTTGGTCCTCGCTCAACTCGG
AGGATGAGGACGAGGAGGAGGAGTTGGAGGAACCACCTGGTTGTGCTGGC
ACCACATCCGTGACGTCCTCCTCCGCCGCCCAGAATGAAGGATCACCCAG
CATGCCAAAGCTTATTATTGACGAGCACATGATCAACCACGATGTTTTAA
GCGATGGCATCGGCAACGAGTACGTCATCCTACCCGATCCATTCAGCGCC
TCTGCGGTCACGGATGTGGAGGAGGTGGTTAATGCATTTATGGGCGATGT
CAAAGGCGAGGAGGACAGCCAGCCGCTAAGTGAACAGTTGATCTATGCGG
AAAACCAGTTGGAAGAAGCTTATGGTAACATCGAGCTTATCGAGAACATG
CCGAATAATGTGGAGCTGATACAGACACCGGGACCAGGTCCAGCCACTGT
GTCGGTAGCGCTATCGAAGGTCAACGGATGTGTACCGAATCCACAGCCGG
CTCTCCCAAAACTAGTGCTCCAGAACAGCAGCACCAATGTGCGACTGAAA
AGTGCGGGAAATCAGTCAAAGGTGACAAAGAGGCAACTCACGGCGGCGGC
TCAGGTGGCGACACCAAATCCCCCACCGCCACTAGTGGCTTCCAGCAATC
CAGCCCGACCCCAACGACCCACAATTGTAACCAAATTACCGACTGCAGTG
GCCAATCAGACGGCTGGTAATGCCATGGGAGCAGCTGGCGCGGCCGGCGA
AGAGGATGAGGAGCCAAAGTTTCGCTGCACCCATCGCGGCTGCAACAAGG
AGTTTCGCAACCACTCGGCCATGCGCAAGCACATGCACACGCACGGACCG
CGCGGTCATGTGTGCAACGTCTGCGGCAAGAGCTTTGTAGAGAGCTCCAA
GCTAAAGCGCCACCAGCTGGTGCACACCGGCGAGAAGCCCTTTGAGTGCA
CCTTTGAGGGGTGCGGCAAGCGCTTCTCGCTGGACTTCAATCTGCGCACC
CACGTACGGATACACACTGGCGATAGGCCCTACCACTGTCCCATTGATGG
CTGCTCCAAGTGCTTCGCCCAGTCAACGAACCTCAAGTCCCACATGCTGA
CGCACACGAAGCCCAAAAGGAAGTGGCCGCGCGCACCGCAAGTGAGCAAC
AACAAGACACCGCTGGTGGCCAGATACGGGCGACTGGAGTTTGGCGAGGA
TCCTCGTCTAGTGTACGTAGAACAGAACGAGGAGGTGGCGTCGGTGCTGC
TGGATGGCACGTCCCTAACATCCTAAAAGCTTTCTAGACCAT
BS01269.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phol-RB | 2010 | CG3445-PB | 1..2010 | 17..2026 | 10050 | 100 | Plus |
phol-RA | 2010 | CG3445-PA | 1..2010 | 17..2026 | 10050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phol-RB | 3384 | CG3445-RB | 648..2657 | 17..2026 | 10050 | 100 | Plus |
phol-RA | 3139 | CG3445-RA | 648..2657 | 17..2026 | 10050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9453530..9455539 | 2026..17 | 10050 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:01:37 has no hits.
BS01269.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:19 Download gff for
BS01269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phol-RA | 1..2010 | 17..2026 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:17 Download gff for
BS01269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phol-RA | 615..2632 | 9..2026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:14 Download gff for
BS01269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phol-RA | 648..2655 | 17..2024 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:19 Download gff for
BS01269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phol-RA | 615..2632 | 9..2026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:52 Download gff for
BS01269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phol-RA | 648..2655 | 17..2024 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:52 Download gff for
BS01269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9453532..9455539 | 17..2024 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:14 Download gff for
BS01269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9446632..9448639 | 17..2024 | 100 | | Minus |
BS01269.pep Sequence
Translation from 16 to 2025
> BS01269.pep
MTSHHHHVGVGGNFQPQLHQIRAPIVKNLSLAAAAVPLPLHSAPSSAYFT
HAHQPTAATIVEQDPYTVLAGDPMGEESESFLIEEIIDDYDDEANIVVDS
GEFFEHYEYYPVDRLDRLTSVTVATADALPPPIIMQQTSDDEEFIEEDGQ
QMTSSCDGDGDEDDEATAPATTNAFEIASEMLTTIEATNIKEEQLESDFY
MKATEDSNSSNGQLQDFKLFGSSRVERPMGNSAAKRWKQTKVPIRITQDE
FNVTLWSSLNSEDEDEEEELEEPPGCAGTTSVTSSSAAQNEGSPSMPKLI
IDEHMINHDVLSDGIGNEYVILPDPFSASAVTDVEEVVNAFMGDVKGEED
SQPLSEQLIYAENQLEEAYGNIELIENMPNNVELIQTPGPGPATVSVALS
KVNGCVPNPQPALPKLVLQNSSTNVRLKSAGNQSKVTKRQLTAAAQVATP
NPPPPLVASSNPARPQRPTIVTKLPTAVANQTAGNAMGAAGAAGEEDEEP
KFRCTHRGCNKEFRNHSAMRKHMHTHGPRGHVCNVCGKSFVESSKLKRHQ
LVHTGEKPFECTFEGCGKRFSLDFNLRTHVRIHTGDRPYHCPIDGCSKCF
AQSTNLKSHMLTHTKPKRKWPRAPQVSNNKTPLVARYGRLEFGEDPRLVY
VEQNEEVASVLLDGTSLTS*
BS01269.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phol-PB | 669 | CG3445-PB | 1..669 | 1..669 | 3516 | 100 | Plus |
phol-PA | 669 | CG3445-PA | 1..669 | 1..669 | 3516 | 100 | Plus |
pho-PB | 520 | CG17743-PB | 354..473 | 499..618 | 551 | 80 | Plus |
pho-PA | 520 | CG17743-PA | 354..473 | 499..618 | 551 | 80 | Plus |
Aef1-PB | 308 | CG5683-PB | 83..294 | 406..617 | 284 | 33.8 | Plus |