Clone BS01269 Report

Search the DGRC for BS01269

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:12
Well:69
Vector:pDNR-Dual
Associated Gene/Transcriptphol-RA
Protein status:BS01269.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01269.3prime Sequence

877 bp (755 high quality bases) assembled on 2005-11-29

> BS01269.3prime
ATGGTCTAGAAAGCTTTTAGGATGTTAGGGACGTGCCATCCAGCAGCACC
GACGCCACCTCCTCGTTCTGTTCTACGTACACTAGACGAGGATCCTCGCC
AAACTCCAGTCGCCCGTATCTGGCCACCAGCGGTGTCTTGTTGTTGCTCA
CTTGCGGTGCGCGCGGCCACTTCCTTTTGGGCTTCGTGTGCGTCAGCATG
TGGGACTTGAGGTTCGTTGACTGGGCGAAGCACTTGGAGCAGCCATCAAT
GGGACAGTGGTAGGGCCTATCGCCAGTGTGTATCCGTACGTGGGTGCGCA
GATTGAAGTCCAGCGAGAAGCGCTTGCCGCACCCCTCAAAGGTGCACTCA
AAGGGCTTCTCGCCGGTGTGCACCAGCTGGTGGCGCTTTAGCTTGGAGCT
CTCTACAAAGCTCTTGCCGCAGACGTTGCACACATGACCGCGCGGTCCGT
GCGTGTGCATGTGCTTGCGCATGGCCGAGTGGTTGCGAAACTCCTTGTTG
CAGCCGCGATGGGTGCAGCGAAACTTTGGCTCCTCATCCTCTTCGCCGGC
CGCGCCAGCTGCTCCCATGGCATTACCAGCCGTCTGATTGGCCACTGCAG
TCGGTAATTTGGTTACAATTGTGGGTCGTTGGGGTCGGGCTGGATTGCTG
GAAGCCACTAGTGGCGGTGGGGGATTTGGTGTCGCCACCTGAGCCGCCGC
CGTGAGTTGCCTCTTTGTCACCTTTGACTGATTTCCCGCACTTTTCAGTC
GCACATTGGTGCTGCTGTTCTGGAGCACTAGTTTTGGGAGAGCCGGCTGT
GGGATCGGTACACATCCGTTGACCTTCGATAGCGCTACCGACACAGTGGC
TGGGACTGGTCCCGGTGTCTGTATCAG

BS01269.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3445-PA 2010 phol-RA 1150..2010 877..17 4205 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
phol-RB 3384 CG3445-RB 1797..2657 877..17 4245 99.5 Minus
phol-RA 3139 CG3445-RA 1797..2657 877..17 4245 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9453530..9454390 17..877 4245 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 12:14:37 has no hits.

BS01269.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:19 Download gff for BS01269.3prime
Subject Subject Range Query Range Percent Splice Strand
phol-PA 1150..2010 17..877 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:36 Download gff for BS01269.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3445-PA 1150..2010 17..877 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:30:52 Download gff for BS01269.3prime
Subject Subject Range Query Range Percent Splice Strand
phol-RA 1797..2657 17..877 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:21 Download gff for BS01269.3prime
Subject Subject Range Query Range Percent Splice Strand
phol-RA 1797..2657 17..877 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:21 Download gff for BS01269.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9453530..9454390 17..877 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:30:52 Download gff for BS01269.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9446630..9447490 17..877 99   Plus

BS01269.5prime Sequence

831 bp (797 high quality bases) assembled on 2005-11-29

> BS01269.5prime
GAAGTTATCAGTCGACATGACAAGTCATCATCATCACGTCGGCGTCGGAG
GGAACTTCCAGCCTCAACTGCATCAGATACGAGCGCCCATCGTGAAGAAT
CTATCGCTGGCCGCTGCGGCGGTACCGTTGCCCCTGCACTCCGCCCCGTC
GTCGGCATACTTCACTCATGCACACCAGCCTACGGCGGCTACCATAGTCG
AGCAAGATCCGTACACCGTTTTGGCGGGCGATCCGATGGGCGAGGAAAGC
GAGAGCTTCCTGATCGAGGAGATCATCGACGACTATGATGATGAGGCTAA
TATCGTCGTAGACTCAGGCGAATTCTTTGAGCACTATGAATACTATCCGG
TGGATCGGCTGGACAGACTTACCTCGGTCACGGTGGCTACGGCAGATGCA
CTGCCGCCGCCGATCATCATGCAGCAGACCAGCGACGATGAGGAATTCAT
CGAGGAGGATGGACAGCAGATGACATCCTCCTGCGATGGCGATGGCGATG
AGGATGATGAGGCTACCGCGCCGGCTACGACAAATGCCTTCGAGATTGCC
TCCGAGATGCTAACCACCATCGAGGCCACAAACATCAAGGAGGAGCAGCT
CGAGAGCGACTTCTATATGAAGGCGACCGAGGATTCAAACAGTTCGAATG
GCCAGCTGCAGGATTTTAAGCTATTTGGAAGCAGTCGCGTCGAGAGGCCC
ATGGGAAATTCAGCGGCCAAGCGCTGGAAGCAAACAAAGGTACCCATACG
CATAACGCAGGATGAGTTCAATGTCACCCTTTGGTCCTCGCTCAACTCGG
AGGATGAGGACGAGGAGGAGGAGTTGGAGGA

BS01269.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3445-PA 2010 phol-RA 1..815 17..831 4075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
phol-RB 3384 CG3445-RB 648..1462 17..831 4075 100 Plus
phol-RA 3139 CG3445-RA 648..1462 17..831 4075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9454725..9455539 831..17 4075 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:37:27 has no hits.

BS01269.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:20 Download gff for BS01269.5prime
Subject Subject Range Query Range Percent Splice Strand
phol-PA 1..814 17..830 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:38 Download gff for BS01269.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3445-PA 1..814 17..830 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:30:16 Download gff for BS01269.5prime
Subject Subject Range Query Range Percent Splice Strand
phol-RA 640..1461 9..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:20:54 Download gff for BS01269.5prime
Subject Subject Range Query Range Percent Splice Strand
phol-RA 640..1461 9..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:20:54 Download gff for BS01269.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9454726..9455547 9..830 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:30:16 Download gff for BS01269.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9447826..9448647 9..830 99   Minus

BS01269.complete Sequence

2042 bp (2042 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634579

> BS01269.complete
GAAGTTATCAGTCGACATGACAAGTCATCATCATCACGTCGGCGTCGGAG
GGAACTTCCAGCCTCAACTGCATCAGATACGAGCGCCCATCGTGAAGAAT
CTATCGCTGGCCGCTGCGGCGGTACCGTTGCCCCTGCACTCCGCCCCGTC
GTCGGCATACTTCACTCATGCACACCAGCCTACGGCGGCTACCATAGTCG
AGCAAGATCCGTACACCGTTTTGGCGGGCGATCCGATGGGCGAGGAAAGC
GAGAGCTTCCTGATCGAGGAGATCATCGACGACTATGATGATGAGGCTAA
TATCGTCGTAGACTCAGGCGAATTCTTTGAGCACTATGAATACTATCCGG
TGGATCGGCTGGACAGACTTACCTCGGTCACGGTGGCTACGGCAGATGCA
CTGCCGCCGCCGATCATCATGCAGCAGACCAGCGACGATGAGGAATTCAT
CGAGGAGGATGGACAGCAGATGACATCCTCCTGCGATGGCGATGGCGATG
AGGATGATGAGGCTACCGCGCCGGCTACGACAAATGCCTTCGAGATTGCC
TCCGAGATGCTAACCACCATCGAGGCCACAAACATCAAGGAGGAGCAGCT
CGAGAGCGACTTCTATATGAAGGCGACCGAGGATTCAAACAGTTCGAATG
GCCAGCTGCAGGATTTTAAGCTATTTGGAAGCAGTCGCGTCGAGAGGCCC
ATGGGAAATTCAGCGGCCAAGCGCTGGAAGCAAACAAAGGTACCCATACG
CATAACGCAGGATGAGTTCAATGTCACCCTTTGGTCCTCGCTCAACTCGG
AGGATGAGGACGAGGAGGAGGAGTTGGAGGAACCACCTGGTTGTGCTGGC
ACCACATCCGTGACGTCCTCCTCCGCCGCCCAGAATGAAGGATCACCCAG
CATGCCAAAGCTTATTATTGACGAGCACATGATCAACCACGATGTTTTAA
GCGATGGCATCGGCAACGAGTACGTCATCCTACCCGATCCATTCAGCGCC
TCTGCGGTCACGGATGTGGAGGAGGTGGTTAATGCATTTATGGGCGATGT
CAAAGGCGAGGAGGACAGCCAGCCGCTAAGTGAACAGTTGATCTATGCGG
AAAACCAGTTGGAAGAAGCTTATGGTAACATCGAGCTTATCGAGAACATG
CCGAATAATGTGGAGCTGATACAGACACCGGGACCAGGTCCAGCCACTGT
GTCGGTAGCGCTATCGAAGGTCAACGGATGTGTACCGAATCCACAGCCGG
CTCTCCCAAAACTAGTGCTCCAGAACAGCAGCACCAATGTGCGACTGAAA
AGTGCGGGAAATCAGTCAAAGGTGACAAAGAGGCAACTCACGGCGGCGGC
TCAGGTGGCGACACCAAATCCCCCACCGCCACTAGTGGCTTCCAGCAATC
CAGCCCGACCCCAACGACCCACAATTGTAACCAAATTACCGACTGCAGTG
GCCAATCAGACGGCTGGTAATGCCATGGGAGCAGCTGGCGCGGCCGGCGA
AGAGGATGAGGAGCCAAAGTTTCGCTGCACCCATCGCGGCTGCAACAAGG
AGTTTCGCAACCACTCGGCCATGCGCAAGCACATGCACACGCACGGACCG
CGCGGTCATGTGTGCAACGTCTGCGGCAAGAGCTTTGTAGAGAGCTCCAA
GCTAAAGCGCCACCAGCTGGTGCACACCGGCGAGAAGCCCTTTGAGTGCA
CCTTTGAGGGGTGCGGCAAGCGCTTCTCGCTGGACTTCAATCTGCGCACC
CACGTACGGATACACACTGGCGATAGGCCCTACCACTGTCCCATTGATGG
CTGCTCCAAGTGCTTCGCCCAGTCAACGAACCTCAAGTCCCACATGCTGA
CGCACACGAAGCCCAAAAGGAAGTGGCCGCGCGCACCGCAAGTGAGCAAC
AACAAGACACCGCTGGTGGCCAGATACGGGCGACTGGAGTTTGGCGAGGA
TCCTCGTCTAGTGTACGTAGAACAGAACGAGGAGGTGGCGTCGGTGCTGC
TGGATGGCACGTCCCTAACATCCTAAAAGCTTTCTAGACCAT

BS01269.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
phol-RB 2010 CG3445-PB 1..2010 17..2026 10050 100 Plus
phol-RA 2010 CG3445-PA 1..2010 17..2026 10050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
phol-RB 3384 CG3445-RB 648..2657 17..2026 10050 100 Plus
phol-RA 3139 CG3445-RA 648..2657 17..2026 10050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9453530..9455539 2026..17 10050 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:01:37 has no hits.

BS01269.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:19 Download gff for BS01269.complete
Subject Subject Range Query Range Percent Splice Strand
phol-RA 1..2010 17..2026 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:17 Download gff for BS01269.complete
Subject Subject Range Query Range Percent Splice Strand
phol-RA 615..2632 9..2026 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:14 Download gff for BS01269.complete
Subject Subject Range Query Range Percent Splice Strand
phol-RA 648..2655 17..2024 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:19 Download gff for BS01269.complete
Subject Subject Range Query Range Percent Splice Strand
phol-RA 615..2632 9..2026 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:52 Download gff for BS01269.complete
Subject Subject Range Query Range Percent Splice Strand
phol-RA 648..2655 17..2024 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:52 Download gff for BS01269.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9453532..9455539 17..2024 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:14 Download gff for BS01269.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9446632..9448639 17..2024 100   Minus

BS01269.pep Sequence

Translation from 16 to 2025

> BS01269.pep
MTSHHHHVGVGGNFQPQLHQIRAPIVKNLSLAAAAVPLPLHSAPSSAYFT
HAHQPTAATIVEQDPYTVLAGDPMGEESESFLIEEIIDDYDDEANIVVDS
GEFFEHYEYYPVDRLDRLTSVTVATADALPPPIIMQQTSDDEEFIEEDGQ
QMTSSCDGDGDEDDEATAPATTNAFEIASEMLTTIEATNIKEEQLESDFY
MKATEDSNSSNGQLQDFKLFGSSRVERPMGNSAAKRWKQTKVPIRITQDE
FNVTLWSSLNSEDEDEEEELEEPPGCAGTTSVTSSSAAQNEGSPSMPKLI
IDEHMINHDVLSDGIGNEYVILPDPFSASAVTDVEEVVNAFMGDVKGEED
SQPLSEQLIYAENQLEEAYGNIELIENMPNNVELIQTPGPGPATVSVALS
KVNGCVPNPQPALPKLVLQNSSTNVRLKSAGNQSKVTKRQLTAAAQVATP
NPPPPLVASSNPARPQRPTIVTKLPTAVANQTAGNAMGAAGAAGEEDEEP
KFRCTHRGCNKEFRNHSAMRKHMHTHGPRGHVCNVCGKSFVESSKLKRHQ
LVHTGEKPFECTFEGCGKRFSLDFNLRTHVRIHTGDRPYHCPIDGCSKCF
AQSTNLKSHMLTHTKPKRKWPRAPQVSNNKTPLVARYGRLEFGEDPRLVY
VEQNEEVASVLLDGTSLTS*

BS01269.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
phol-PB 669 CG3445-PB 1..669 1..669 3516 100 Plus
phol-PA 669 CG3445-PA 1..669 1..669 3516 100 Plus
pho-PB 520 CG17743-PB 354..473 499..618 551 80 Plus
pho-PA 520 CG17743-PA 354..473 499..618 551 80 Plus
Aef1-PB 308 CG5683-PB 83..294 406..617 284 33.8 Plus