Clone Sequence Records
BS01272.3prime Sequence
909 bp (853 high quality bases) assembled on 2005-11-29
> BS01272.3prime
ATGGTCTAGAAAGCTTCTATTGCTTCTGTTCCGACTGTGGGAACAGCGCG
CCGCTGGTCTGGCGCTTCTTCATCGCTGTGGTGGCGCCCTGCGAAATCTT
CATGATGTTCGGCGGGAGCGGTTTCTTGCGATCCGCCTCCCACTCGGCTC
GGTGGAGCCGCTGACGGTGCTTGTACATGTTGGCGTTGGAAAAGAACGTC
ATGGGGCAGTTAGGACAGGTGTACAGCACCTCTCCGGTGTGCGTTGATGT
GTGCTCCCTCAGATCCTGTGGACGCTTAAATGCCTTTTCGCACATCCCGC
ACTTGAACTTTCGCTCACAGAGGTGGTTGTGGTAGATGTGGCGCTTCAGG
GCTCGGGAATTGGTGGATGTCTTGTTGCAGATATGACAGCGGTGCTCGTC
GCCCGGCGGCTCGTGTACCGTTTTCATGTGCTGCTTTAGTCCGGACAAGT
GGCGCAGCCAGGTGCCGCAGATCTCGCACTGCACGGGATCGGGTTTTGGA
CGCGGTTTCTCGGAATGTTCAAGCTCGTGATGCTTTTTGAGATTCGTTTG
TGAACGTAGCGTCTTGCCACACTTATCGCAGATGATGGCCGCTTCCGGGT
CGTGCATGTAACGCAAGTGCTCTTTCAGTTTGCGTTCCGTAGGAATCTTC
TTGTTGCACTCCGGACAAGAGTATTTGAACTCGGATTTCGGGACATGCTT
GGAAACGTCATGATACTCCATGGCCGCCTTGGTTGTGAAGCTCTTGGGGC
ACTTCTCGCACTGGTAGATCCGCTTCTCCTTCGGCTCCGCCTTGACCTCC
GGGTTTGTGTGTGTCTGCTCGTGGACCTCCAGGGCGCGGGAGTCCTGGAA
TACCCGCCCGCACTGAGAGCACATAAAGTGATCTGGGGTCTTGTGGACCA
AGACGTGCT
BS01272.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4707-PA | 2022 | CG4707-RA | 1130..2022 | 909..17 | 4440 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:03:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4707-RA | 2248 | CG4707-RA | 1252..2144 | 909..17 | 4450 | 99.9 | Minus |
| CG4282-RA | 2393 | CG4282-RA | 1454..2064 | 701..91 | 480 | 73.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:03:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24604993..24605384 | 256..647 | 1960 | 100 | Plus |
| 2R | 25286936 | 2R | 24605447..24605709 | 647..909 | 1300 | 99.6 | Plus |
| 2R | 25286936 | 2R | 24604699..24604939 | 17..257 | 1205 | 100 | Plus |
| 2R | 25286936 | 2R | 16324306..16324472 | 257..91 | 235 | 76 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:03:20 has no hits.
BS01272.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:23 Download gff for
BS01272.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-PA | 1130..2022 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:41 Download gff for
BS01272.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-PA | 1130..2022 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:10 Download gff for
BS01272.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 1252..2149 | 10..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:44 Download gff for
BS01272.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 1252..2149 | 10..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:44 Download gff for
BS01272.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24604694..24604938 | 10..256 | 98 | <- | Plus |
| 2R | 24604994..24605384 | 257..647 | 100 | <- | Plus |
| 2R | 24605448..24605709 | 648..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:10 Download gff for
BS01272.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20492217..20492461 | 10..256 | 98 | <- | Plus |
| arm_2R | 20492517..20492907 | 257..647 | 100 | <- | Plus |
| arm_2R | 20492971..20493232 | 648..909 | 99 | | Plus |
BS01272.5prime Sequence
708 bp (707 high quality bases) assembled on 2005-11-29
> BS01272.5prime
GAAGTTATCAGTCGACATGACTGTCTGTGTGCTCTGCCTGGACAGTAGCA
ATGCTGGCTACGGCCTACAATCCGAGGAAGGCGTCCGTCTGAACATTAGG
GCGACCATCCACAAGCACTTCGCGTTCTCCGAGGTTCTTACGGCTGGCGG
TGATGCTGAGGTCTGTCGGGAGTGCTGGAACTGCGTTAGCAGCTTCGAGG
AGTTTCACCAGCGCGTCTCCTGCCTGCACCGGCAGCGGAGCAGCGATTCC
AAAAGCGAACCCATCGAATTTTGCGGTCAGACAGAGGAGGCCATCATTAA
TCCGCTATATTCTGTGGAGTTGGACGCGTTGGCGGAGGCCTTTTTTGCGC
CCAGTGAGGTCAAGGTGGAGGTGAACGAACTAGAACCCCTGCCCAAGGTG
GAACTCTTGGAAGACCCAGTTAAAACGGAAATCAGAACAGCTCCGAAACG
GTTGGGTGTCCCAAACGAAGGCTCACCACACTCGAAGCGGCGCATTAAAA
ACGAGCTGCCAGTGGATAGTGACTCGGATGCACCTCTGGCCGATTTTTTA
AACTCGGATTCAAAGAGAAGTTCAGTTGGACCCGCAAAGAACAGCGAAGC
GAACAAGGGACGCCAGCTACGAAGGAGCGCAAGAAGAGGACGGCCACCCA
AAGCTAAGCCGGAATCGGCTCCTTCCCCAAAGAAGGAACTGGACTCCGAA
GATGGCGA
BS01272.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4707-PA | 2022 | CG4707-RA | 1..692 | 17..708 | 3460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4707-RA | 2248 | CG4707-RA | 118..814 | 12..708 | 3470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24606147..24606723 | 708..132 | 2885 | 100 | Minus |
| 2R | 25286936 | 2R | 24606783..24606906 | 135..12 | 605 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:12:01 has no hits.
BS01272.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:24 Download gff for
BS01272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-PA | 1..691 | 17..707 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:43 Download gff for
BS01272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-PA | 1..691 | 17..707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:40:47 Download gff for
BS01272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 118..813 | 12..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:16 Download gff for
BS01272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 118..813 | 12..707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:16 Download gff for
BS01272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24606148..24606721 | 134..707 | 100 | <- | Minus |
| 2R | 24606785..24606906 | 12..133 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:40:47 Download gff for
BS01272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20493671..20494244 | 134..707 | 100 | <- | Minus |
| arm_2R | 20494308..20494429 | 12..133 | 99 | | Minus |
BS01272.complete Sequence
2054 bp assembled on 2007-10-05
GenBank Submission: FJ634580
> BS01272.complete
GAAGTTATCAGTCGACATGACTGTCTGTGTGCTCTGCCTGGACAGTAGCA
ATGCTGGCTACGGCCTACAATCCGAGGAAGGCGTCCGTCTGAACATTAGG
GCGACCATCCACAAGCACTTCGCGTTCTCCGAGGTTCTTACGGCTGGCGG
TGATGCTGAGGTCTGTCGGGAGTGCTGGAACTGCGTTAGCAGCTTCGAGG
AGTTTCACCAGCGCGTCTCCTGCCTGCACCGGCAGCGGAGCAGCGATTCC
AAAAGCGAACCCATCGAATTTTGCGGTCAGACAGAGGAGGCCATCATTAA
TCCGCTATATTCTGTGGAGTTGGACGCGTTGGCGGAGGCCTTTTTTGCGC
CCAGTGAGGTCAAGGTGGAGGTGAACGAACTAGAACCCCTGCCCAAGGTG
GAACTCTTGGAAGACCCAGTTAAAACGGAAATCAGAACAGCTCCGAAACG
GTTGGGTGTCCCAAACGAAGGCTCACCACACTCGAAGCGGCGCATTAAAA
ACGAGCTGCCAGTGGATAGTGACTCGGATGCACCTCTGGCCGATTTTTTA
AACTCGGATTCAAAGAGAAGTTCAGTTGGACCCGCAAAGAACAGCGAAGC
GAACAAGGGACGCCAGCTACGAAGGAGCGCAAGAAGAGGACGGCCACCCA
AAGCTAAGCCGGAATCGGCTCCTTCCCCAAAGAAGGAACTGGACTCCGAA
GATGGCGAAGAAAATGCCAGGGATAACAATGACATGGAGTTCGTGGCTCC
CGAGGCTGTCTTGGGCACTGACGACAGCTCCAGTTCCTCCAGTGAGAGCA
GTGGAGAGGATTCCGACCACAGCCTGCCGGACATAGAGCCTGAGGAACGT
TACGCTGAGATTCCCAAGCGGGTTGTGGTGAAACCTAAGAAGTACCGAAA
AAGGGAAAAGCCACTGGTTCCACCCGTTCGTCTGAGTCGGGAGGAGATTG
AACGGAGGAAGCTCCAGCAAGACGAGTACGATGAGATTATCCTGCAGTTC
TTCAAAAAGTTTCCGTGCTCTCTGTGCAATCTGCTGGTGCAGAACTTTGC
GGACATGCGACGCCATCAACGCGTTTCCCACAACATCGAATCTGGCTACA
TCGAATGCTGCGGGAGAAAGTTCCACCTGCGCAAGGCTTTGGCCGAGCAC
GTCTTGGTCCACAAGAACCCAGATCACTTTATGTGCTCTCAGTGCGGGCG
GGTATTCCAGGACTCCCGCGCCCTGGAGGTCCACGAGCAGACACACACAA
ACCCGGAGGTCAAGGCGGAGCCGAAGGAGAAGCGGATCTACCAGTGCGAG
AAGTGCCCCAAGAGCTTCACAACCAAGGCGGCCATGGAGTATCATGACGT
TTCCAAGCATGTCCCGAAATCCGAGTTCAAATACTCTTGTCCGGAGTGCA
ACAAGAAGATTCCTACGGAACGCAAACTGAAAGAGCACTTGCGTTACATG
CACGACCCGGAAGCGGCCATCATCTGCGATAAGTGTGGCAAGACGCTACG
TTCACAAACGAATCTCAAAAAGCATCACGAGCTTGAACATTCCGAGAAAC
CGCGTCCAAAACCCGATCCCGTGCAGTGCGAGATCTGCGGCACCTGGCTG
CGCCACTTGTCCGGACTAAAGCAGCACATGAAAACGGTACACGAGCCGCC
GGGCGACGAGCACCGCTGTCATATCTGCAACAAGACATCCACCAATTCCC
GAGCCCTGAAGCGCCACATCTACCACAACCACCTCTGTGAGCGAAAGTTC
AAGTGCGGGATGTGCGAAAAGGCATTTAAGCGTCCACAGGATCTGAGGGA
GCACACATCAACGCACACCGGAGAGGTGCTGTACACCTGTCCTAACTGCC
CCATGACGTTCTTTTCCAACGCCAACATGTACAAGCACCGTCAGCGGCTC
CACCGAGCCGAGTGGGAGGCGGATCGCAAGAAACCGCTCCCGCCGAACAT
CATGAAGATTTCGCAGGGCGCCACCACAGCGATGAAGAAGCGCCAGACCA
GCGGCGCGCTGTTCCCACAGTCGGAACAGAAGCAATAGAAGCTTTCTAGA
CCAT
BS01272.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4707-RA | 2022 | CG4707-PA | 1..2022 | 17..2038 | 10110 | 100 | Plus |
| CG4282-RA | 1959 | CG4282-PA | 1308..1918 | 1354..1964 | 475 | 71.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4707-RA | 2248 | CG4707-RA | 118..2144 | 12..2038 | 10120 | 100 | Plus |
| CG4282-RA | 2393 | CG4282-RA | 1454..2064 | 1354..1964 | 475 | 71.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24605447..24606723 | 1408..132 | 6385 | 100 | Minus |
| 2R | 25286936 | 2R | 24604993..24605384 | 1799..1408 | 1960 | 100 | Minus |
| 2R | 25286936 | 2R | 24604699..24604939 | 2038..1798 | 1205 | 100 | Minus |
| 2R | 25286936 | 2R | 24606783..24606906 | 135..12 | 605 | 99.2 | Minus |
| 2R | 25286936 | 2R | 16324306..16324472 | 1798..1964 | 235 | 76 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:33:45 has no hits.
BS01272.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:09 Download gff for
BS01272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 1..2022 | 17..2038 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:50:41 Download gff for
BS01272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 113..2144 | 12..2045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:56 Download gff for
BS01272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 123..2144 | 17..2038 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:09 Download gff for
BS01272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 113..2144 | 12..2045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:19 Download gff for
BS01272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 123..2144 | 17..2038 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:19 Download gff for
BS01272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24604699..24604938 | 1799..2038 | 100 | <- | Minus |
| 2R | 24604994..24605384 | 1408..1798 | 100 | <- | Minus |
| 2R | 24605448..24606721 | 134..1407 | 100 | <- | Minus |
| 2R | 24606785..24606901 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:56 Download gff for
BS01272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20492222..20492461 | 1799..2038 | 100 | <- | Minus |
| arm_2R | 20492517..20492907 | 1408..1798 | 100 | <- | Minus |
| arm_2R | 20492971..20494244 | 134..1407 | 100 | <- | Minus |
| arm_2R | 20494308..20494424 | 17..133 | 100 | | Minus |
BS01272.pep Sequence
Translation from 16 to 2037
> BS01272.pep
MTVCVLCLDSSNAGYGLQSEEGVRLNIRATIHKHFAFSEVLTAGGDAEVC
RECWNCVSSFEEFHQRVSCLHRQRSSDSKSEPIEFCGQTEEAIINPLYSV
ELDALAEAFFAPSEVKVEVNELEPLPKVELLEDPVKTEIRTAPKRLGVPN
EGSPHSKRRIKNELPVDSDSDAPLADFLNSDSKRSSVGPAKNSEANKGRQ
LRRSARRGRPPKAKPESAPSPKKELDSEDGEENARDNNDMEFVAPEAVLG
TDDSSSSSSESSGEDSDHSLPDIEPEERYAEIPKRVVVKPKKYRKREKPL
VPPVRLSREEIERRKLQQDEYDEIILQFFKKFPCSLCNLLVQNFADMRRH
QRVSHNIESGYIECCGRKFHLRKALAEHVLVHKNPDHFMCSQCGRVFQDS
RALEVHEQTHTNPEVKAEPKEKRIYQCEKCPKSFTTKAAMEYHDVSKHVP
KSEFKYSCPECNKKIPTERKLKEHLRYMHDPEAAIICDKCGKTLRSQTNL
KKHHELEHSEKPRPKPDPVQCEICGTWLRHLSGLKQHMKTVHEPPGDEHR
CHICNKTSTNSRALKRHIYHNHLCERKFKCGMCEKAFKRPQDLREHTSTH
TGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRKKPLPPNIMKISQ
GATTAMKKRQTSGALFPQSEQKQ*
BS01272.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4707-PA | 673 | CG4707-PA | 1..673 | 1..673 | 3620 | 100 | Plus |
| CG4282-PA | 652 | CG4282-PA | 7..650 | 4..660 | 1569 | 46.4 | Plus |
| CG8388-PA | 572 | CG8388-PA | 113..558 | 206..667 | 691 | 35 | Plus |
| grau-PA | 570 | CG33133-PA | 128..536 | 221..638 | 600 | 34.6 | Plus |
| CG15073-PA | 580 | CG15073-PA | 133..546 | 222..651 | 564 | 30.2 | Plus |
