Clone BS01273 Report

Search the DGRC for BS01273

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:12
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG3726-RA
Protein status:BS01273.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01273.3prime Sequence

814 bp (794 high quality bases) assembled on 2005-11-29

> BS01273.3prime
ATGGTCTAGAAAGCTTTCAGCTTGCCCAGCTCTGCAAGTAGGGATTGGTT
TGGACCAGCTGAGCTGGAAGGACGCCCCCGTTGCGGAATCCCAAGTCGAA
GCGAGGCTGAACTCCCATCTGACTGGTCGAGGTGGATCCAGAGTTCCGGA
AGGCGGTGCCACTGTAAGGATGCTTAAGGCAGCCATAGACCTCGCGGTAA
CGCCCATACAGAGTGCCATAGGAGACGCCCAGAATTCTGGCGGCCTTCTT
CATCTCGAGTCTTTTGTTTTTAATGGCGTCCAACACGCGCTTGGTGAATG
GCTCTTCCCAGAACTGTGGACGCCGCCCCTTAGCCAGGTAGTCGTCCATC
TTGATGACGTCCTGCCACTGCGACAGCTCCTCGTTGGTCAGTCGCAGTTC
GGCGGCATCGTAGTCCTCCAGCTTGATGTCGGGATAGTCGGCGGCGGCAC
CGGTTCCACTGCCACTTACATCCTGACCACCGTTTCCGTTTCCGGCTGAG
GCATTTGCCACTGCAGCGGCGGCTGCTGCAACGGCCACAGCTGCGGTGGC
GGCGGCACTGGCCACATTCGGTGCAAATTCGTGGGCCATCAGCATGCCAT
GTTCGTTGATCAAGTAGGAGGATCCAAGCGATCCGGATCCAGTTCCAGAA
CCGGAGCCACCGCCTGCGGCAGTCACGCCTCCCTCGTATTTGCAGGCAAA
ACTAGCTGGTATGACGACCGTAGGACGCGGCGACTCTGCCCTATTTGCCA
CCAGATGCTCGTTCTCGATCTCTTCCACCGGTTGCGGCAGCTCATCGGGC
TCCTCCTTTGGCGG

BS01273.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3726-PA 2031 CG3726-RA 1234..2031 814..17 3965 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3726-RA 2901 CG3726-RA 1803..2601 814..16 3980 99.9 Minus
CG3726-RB 3129 CG3726-RB 1866..2625 814..55 3785 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5940088..5940617 814..285 2635 99.8 Minus
X 23542271 X 5940972..5941096 286..162 625 100 Minus
X 23542271 X 5941163..5941271 163..55 545 100 Minus
X 23542271 X 5941325..5941364 55..16 200 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:47:16 has no hits.

BS01273.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:25 Download gff for BS01273.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-PA 1234..2031 17..814 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:45 Download gff for BS01273.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-PA 1234..2031 17..814 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:36:05 Download gff for BS01273.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 1803..2601 16..814 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:25:46 Download gff for BS01273.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 1803..2601 16..814 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:25:46 Download gff for BS01273.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5940088..5940615 287..814 99 -> Minus
X 5940972..5941096 162..286 100 -> Minus
X 5941165..5941271 55..161 100 -> Minus
X 5941326..5941364 16..54 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:36:05 Download gff for BS01273.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5834121..5834648 287..814 99 -> Minus
arm_X 5835005..5835129 162..286 100 -> Minus
arm_X 5835198..5835304 55..161 100 -> Minus
arm_X 5835359..5835397 16..54 100   Minus

BS01273.5prime Sequence

830 bp (786 high quality bases) assembled on 2005-11-29

> BS01273.5prime
GAAGTTATCAGTCGACATGCTGCCGCAGCAGTACTGCCTAAGGTGGAAGT
ACCACCATAGCAATCTGCAGACCATGTTCTCCCAGCTGCTGGATCGCGGT
TGCTTCTGCGACGTGACCCTGGCCTGCGAGGGTCAGCTCATCCGCGCCCA
TCGCGTCGTCCTGTGCGCCTGCAGCACCTTCTTCGACGCCGTGCTCTCCA
ACTACGCCAGTGAACGTGATCCGATCATCATCATGAAGGACGTTACCTTT
GCGGAGGTCAAATGCCTCATCGAGTTCATGTACAAGGGCGAGATCAACGT
GGAGCATTCCAGCCTTCCCTCGCTGCTGAAGACCGCCGATGACCTGAAGA
TCAAGGGCCTGGCCGAGGTGACCTGGCGCGATGACGAAGACGGACCGCCG
CCACCAATGGCCGCCGCCGAGTTTCACTCACCGCCGCGCAGCTTGGCAGA
GAGTTACGCCCAGGACCTAATCCTTCAGCATCAGCAACAGCAACAGCAGG
GCCCAGCTGCTCCACCCTTGAATTTGCACAGCTCTGCTGCGCTCTTGGAG
AGAGATCGAGAACGGGAAAGGGAACGTGACCGGGAGCGTCTCTCGCCGGG
GATGGAGGGTGTACTGGGTCGCATGCCCGTGATGACGCCGCTGACTGGCG
CATCGGGTTCGGCAGGAGTGGGTTCGGTATCCGGTGGCACATCGCTCGAG
GGCGTCGCTCCCGTGGAGCACTTTCTGGGTCCCAAACGCAAGCGTGGTCG
TCCGCCGCTAGACGATGCCTATGATGTTTTCAATGTACGCAAGCTGGCCC
AGTATGCCCGCCATCTGGAGCCCGCCCAGC

BS01273.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3726-PA 2031 CG3726-RA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3726-RB 3129 CG3726-RB 632..1446 16..830 4030 99.8 Plus
CG3726-RA 2901 CG3726-RA 569..1383 16..830 4030 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5939035..5939517 304..786 2400 99.8 Plus
X 23542271 X 5938669..5938960 16..307 1460 100 Plus
Blast to na_te.dros performed 2015-02-12 06:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2392 476..498 115 100 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1556..1592 472..508 113 78.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6862..6898 460..499 112 80 Plus

BS01273.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:26 Download gff for BS01273.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-PA 1..814 17..830 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:46 Download gff for BS01273.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-PA 1..814 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:36:22 Download gff for BS01273.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 563..1383 9..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:24 Download gff for BS01273.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 563..1383 9..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:24 Download gff for BS01273.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5938663..5938960 9..307 98 -> Plus
X 5939039..5939517 308..786 100 -> Plus
X 5939625..5939668 787..830 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:36:22 Download gff for BS01273.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5832696..5832993 9..307 98 -> Plus
arm_X 5833072..5833550 308..786 100 -> Plus
arm_X 5833658..5833701 787..830 95   Plus

BS01273.complete Sequence

2063 bp (2063 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ634581

> BS01273.complete
GAAGTTATCAGTCGACATGCTGCCGCAGCAGTACTGCCTAAGGTGGAAGT
ACCACCATAGCAATCTGCAGACCATGTTCTCCCAGCTGCTGGATCGCGGT
TGCTTCTGCGACGTGACCCTGGCCTGCGAGGGTCAGCTCATCCGCGCCCA
TCGCGTCGTCCTGTGCGCCTGCAGCACCTTCTTCGACGCCGTGCTCTCCA
ACTACGCCAGTGAACGTGATCCGATCATCATCATGAAGGACGTTACCTTT
GCGGAGGTCAAATGCCTCATCGAGTTCATGTACAAGGGCGAGATCAACGT
GGAGCATTCCAGCCTTCCCTCGCTGCTGAAGACCGCCGATGACCTGAAGA
TCAAGGGCCTGGCCGAGGTGACCTGGCGCGATGACGAAGACGGACCGCCG
CCACCAATGGCCGCCGCCGAGTTTCACTCACCGCCGCGCAGCTTGGCAGA
GAGTTACGCCCAGGACCTAATCCTTCAGCATCAGCAACAGCAACAGCAGG
GCCCAGCTGCTCCACCCTTGAATTTGCACAGCTCTGCTGCGCTCTTGGAG
AGAGATCGAGAACGGGAAAGGGAACGTGACCGGGAGCGTCTCTCGCCGGG
GATGGAGGGTGTACTGGGTCGCATGCCCGTGATGACGCCGCTGACTGGCG
CATCGGGTTCGGCAGGAGTGGGTTCGGTATCCGGTGGCACATCGCTCGAG
GGCGTCGCTCCCGTGGAGCACTTTCTGGGTCCCAAACGCAAGCGTGGTCG
TCCGCCGCTAGACGATGCCTATGATGTTTTCAATGTACGCAAGCTGGCCC
AGTATGCCGCCAATCTGGAGCCCGCCCAGCGTGCCTACTTGGAGACGGCG
CGTCACTTTACGGAGGAGCCGCCACTGGCCGCCCATGCCGCCTCGATGGC
CTCCCCACCCGCCGCCTGCCCGCCGAAACAGCGCCAGCGTCTACGTCACC
AGCAGCAGCAGCAGCAACAGCTGCTACAGTCGGAGAGCAGTGACCAGGAG
CAGCCGGCTGCTGGCCAGGATTGGTCCAATTTGGAGCCAAATGGCAGTGC
CACGCCCAAACTGCTCAGCGATGGCGATGCTAACAAGCAGGAAACGGAGG
GCGGTGATGAATCGCTACCGGCAGTGCTAACCACCGCCAGCAGCAGCGGC
ACCAAAAAGCTGGAAAAGATAGGCGAGCGTCGCGAACGCCATGGCAAATT
ACGTCATGCTCGTCGCCTTTATGAGAAGTCTGGAGAGGATGAGGTTGATC
CGCCCAAGGAGGAGCCCGATGAGCTGCCGCAACCGGTGGAAGAGATCGAG
AACGAGCATCTGGTGGCAAATAGGGCAGAGTCGCCGCGTCCTACGGTCGT
CATACCAGCTAGTTTTGCCTGCAAATACGAGGGAGGCGTGACTGCCGCAG
GCGGTGGCTCCGGTTCTGGAACTGGATCCGGATCGCTTGGATCCTCCTAC
TTGATCAACGAACATGGCATGCTGATGGCCCACGAATTTGCACCGAATGT
GGCCAGTGCCGCCGCCACCGCAGCTGTGGCCGTTGCAGCAGCCGCCGCTG
CAGTGGCAAATGCCTCAGCCGGAAACGGAAACGGTGGTCAGGATGTAAGT
GGCAGTGGAACCGGTGCCGCCGCCGACTATCCCGACATCAAGCTGGAGGA
CTACGATGCCGCCGAACTGCGACTGACCAACGAGGAGCTGTCGCAGTGGC
AGGACGTCATCAAGATGGACGACTACCTGGCTAAGGGGCGGCGTCCACAG
TTCTGGGAAGAGCCATTCACCAAGCGCGTGTTGGACGCCATTAAAAACAA
AAGACTCGAGATGAAGAAGGCCGCCAGAATTCTGGGCGTCTCCTATGGCA
CTCTGTATGGGCGTTACCGCGAGGTCTATGGCTGCCTTAAGCATCCTTAC
AGTGGCACCGCCTTCCGGAACTCTGGATCCACCTCGACCAGTCAGATGGG
AGTTCAGCCTCGCTTCGACTTGGGATTCCGCAACGGGGGCGTCCTTCCAG
CTCAGCTGGTCCAAACCAATCCCTACTTGCAGAGCTGGGCAAGCTGAAAG
CTTTCTAGACCAT

BS01273.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3726-RA 2031 CG3726-PA 1..2031 17..2047 10155 100 Plus
CG3726-RB 2049 CG3726-PB 1..1993 17..2009 9965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3726-RA 2901 CG3726-RA 569..2601 16..2048 10165 100 Plus
CG3726-RB 3129 CG3726-RB 632..2625 16..2009 9970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5939625..5940617 787..1779 4965 100 Plus
X 23542271 X 5939035..5939517 304..786 2400 99.8 Plus
X 23542271 X 5938669..5938960 16..307 1460 100 Plus
X 23542271 X 5940972..5941096 1778..1902 625 100 Plus
X 23542271 X 5941163..5941271 1901..2009 545 100 Plus
X 23542271 X 5941325..5941364 2009..2048 200 100 Plus
Blast to na_te.dros performed 2014-11-27 19:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2392 476..498 115 100 Plus

BS01273.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:30 Download gff for BS01273.complete
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 1..2031 17..2047 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:41 Download gff for BS01273.complete
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 546..2584 9..2048 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:57 Download gff for BS01273.complete
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 570..2599 17..2046 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:31 Download gff for BS01273.complete
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 546..2584 9..2048 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:09 Download gff for BS01273.complete
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 570..2599 17..2046 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:09 Download gff for BS01273.complete
Subject Subject Range Query Range Percent Splice Strand
X 5938670..5938960 17..307 100 -> Plus
X 5939039..5939517 308..786 100 -> Plus
X 5939625..5940615 787..1777 100 -> Plus
X 5940972..5941096 1778..1902 100 -> Plus
X 5941165..5941271 1903..2009 100 -> Plus
X 5941326..5941362 2010..2046 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:57 Download gff for BS01273.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5835198..5835304 1903..2009 100 -> Plus
arm_X 5835359..5835395 2010..2046 100   Plus
arm_X 5832703..5832993 17..307 100 -> Plus
arm_X 5833072..5833550 308..786 100 -> Plus
arm_X 5833658..5834648 787..1777 100 -> Plus
arm_X 5835005..5835129 1778..1902 100 -> Plus

BS01273.pep Sequence

Translation from 16 to 2046

> BS01273.pep
MLPQQYCLRWKYHHSNLQTMFSQLLDRGCFCDVTLACEGQLIRAHRVVLC
ACSTFFDAVLSNYASERDPIIIMKDVTFAEVKCLIEFMYKGEINVEHSSL
PSLLKTADDLKIKGLAEVTWRDDEDGPPPPMAAAEFHSPPRSLAESYAQD
LILQHQQQQQQGPAAPPLNLHSSAALLERDRERERERDRERLSPGMEGVL
GRMPVMTPLTGASGSAGVGSVSGGTSLEGVAPVEHFLGPKRKRGRPPLDD
AYDVFNVRKLAQYAANLEPAQRAYLETARHFTEEPPLAAHAASMASPPAA
CPPKQRQRLRHQQQQQQQLLQSESSDQEQPAAGQDWSNLEPNGSATPKLL
SDGDANKQETEGGDESLPAVLTTASSSGTKKLEKIGERRERHGKLRHARR
LYEKSGEDEVDPPKEEPDELPQPVEEIENEHLVANRAESPRPTVVIPASF
ACKYEGGVTAAGGGSGSGTGSGSLGSSYLINEHGMLMAHEFAPNVASAAA
TAAVAVAAAAAAVANASAGNGNGGQDVSGSGTGAAADYPDIKLEDYDAAE
LRLTNEELSQWQDVIKMDDYLAKGRRPQFWEEPFTKRVLDAIKNKRLEMK
KAARILGVSYGTLYGRYREVYGCLKHPYSGTAFRNSGSTSTSQMGVQPRF
DLGFRNGGVLPAQLVQTNPYLQSWAS*

BS01273.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3726-PA 676 CG3726-PA 1..676 1..676 3524 100 Plus
CG3726-PB 682 CG3726-PB 1..664 1..664 3458 100 Plus
bab2-PB 1066 CG9102-PB 196..406 4..217 342 39.7 Plus
bab2-PA 1067 CG9102-PA 196..406 4..217 342 39.7 Plus
lolal-PH 127 CG5738-PH 6..118 4..117 304 51.8 Plus