Clone Sequence Records
BS01277.3prime Sequence
905 bp (733 high quality bases) assembled on 2005-11-29
> BS01277.3prime
ATGGTCTAGAAAGCTTCTAACTCTTGAATAGACCCACGCACATCAGGAGA
TTTCGGCGCGTAAAGTGCAGGCTGACAAATGGCGAGTTCTTGCTGGGGAA
AGTACGCATGAGGTAGACGTCCTCGTCGTTCTCATCCTGATGGTGCGACA
CAGTGATGTGATTGCTGATATAGTCTTCGGTAACCTTGTGAAAGTCCCAC
AGAGTTAGATTGTTATCCAAGCCGGCTGCAGCCAGGACTGTTCCATCGCG
ACTAAAGGTGATCGTGGTCACAGTGCTAGTGTGCCTCAACAGGGTGGTGA
CCAGGGATCCGTTCGACAGATCCCAGATGATGATATTGTGATCTACTGAA
CCCGAGGCCAGATACCGGCCGCAGGCGGAGAAGGCCAGAGAACTCACCGA
TCCCTTGTGGCCCGTCATCAGGCGTACCGACTGACCGGTCATGTTGTCCC
ACAGGCGTACCGTGCGATCGCTAGAACCGGTGGCCACATAATTGGAATTG
GGATGAAATTGTACACAATCCACGTCCGACAAGTGACCCACGAATACGCG
CAACGCTTGATTGGAATCCGTGGCCCACAGACGAGCAGTTTTGTCGTACG
AACAAGAAACAAAATAGTAGCCATGCGGCGCANAGCGAACATCCCACACC
GGGTAAACGTGCCCGCGGTAGGTGACTACGCAGGACCAGGTGAGCAGAGA
CCACAGCCTTATGGTGCTGTCCTCGGAACATGAGAGNCACAGGTTCATCT
CGGGGGCAAAGGCACAGCGGTATACGGGTCCGGTGTGACCCATTAAGCTC
CCTGGTACCTCACCACTTCGGTCATCCAGCATACGCACATTGATATCCGC
CGATTCCCTTGTCAGNTCGCGAAGGGAATCTGCATCCTTCAGCGTACGCA
GCTTT
BS01277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7704-PA | 2115 | Taf5-RA | 1331..2115 | 801..17 | 3862 | 99.6 | Minus |
| CG7704-PA | 2115 | Taf5-RA | 1275..1326 | 857..806 | 260 | 100 | Minus |
| CG7704-PA | 2115 | Taf5-RA | 1228..1269 | 904..863 | 191 | 97.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf5-RA | 2362 | CG7704-RA | 1296..2187 | 904..13 | 4307 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:10:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10877487..10878378 | 13..904 | 4292 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:10:15 has no hits.
BS01277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:32 Download gff for
BS01277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-PA | 1227..2115 | 17..905 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:54 Download gff for
BS01277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7704-PA | 1227..2115 | 17..905 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:15:18 Download gff for
BS01277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 1295..2187 | 13..905 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:54:42 Download gff for
BS01277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 1295..2187 | 13..905 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:54:42 Download gff for
BS01277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10877487..10878378 | 13..905 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:15:18 Download gff for
BS01277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6764992..6765883 | 13..905 | 98 | | Plus |
BS01277.5prime Sequence
850 bp (747 high quality bases) assembled on 2005-11-29
> BS01277.5prime
GAAGTTATCAGTCGACATGAGCCTGGAAGTGAGCAATATAAACGGGGGAA
ACGGTACTCAATTGTCCCACGACAAGCGTGAGCTGCTGTGCCTGCTGAAA
CTCATCAAAAAGTACCAGCTGAAGAGCACTGAGGAGCTGCTCTGCCAAGA
GGCGAATGTGAGCAGTGTGGAATTGTCGGAAATCAGCGAAAGTGATGTTC
AGCAGGTGCTGGGCGCAGTTTTGGGAGCTGGCGATGCCAACCGGGAGCGG
AAACATGTCCAATCTCCGGCGCAGGGTCATAAACAGTCCGCGGTGACGGA
GGCCAATGCTGCAGAGGAACTGGCCAAGTTCATCGACGACGACAGCTTTG
ATGCTCAGCACTATGAGCAGGCATACAAGGAGCTGCGCACTTTCGTTGAG
GACTCCCTGGACATATACAAGCATGAGCTGTCCATGGTTCTGTACCCAAT
TCTGGTGCAGATCTACTTCAAGATCCTCGCCAGTGGACTAAGGGAGAAGG
CCAAAGAATTCATTGAGAAGTACAAATGCGATCTCGACGGCTACTACATA
GAGGGTCTTTTCAACCTTCTTTTGCTGTCTAAGCCCGAGGAGCTGCTGGA
GAATGACCTCGTAGTAGCCATGGAGCAGGATAAGTTTGTCATTCGCATGT
CCAGGGACTCGCACTCTCTGTTCAAGCGACACATTCAGGATCGCCGGCAG
GAAGTGGTGGCAGATATTGTTTCCAAGTACTTGCATTTCGACACATACGA
GGGCATGGCGCGCAAACAGCTGCAGTGCGTCGCCACCGCGGGCTCGCACC
TCGGAGAGGCCAAGCGACAGGACAACAAAATGCGGGTGTACTACGGACTG
BS01277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7704-PA | 2115 | Taf5-RA | 1..834 | 17..850 | 4120 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf5-RA | 2362 | CG7704-RA | 69..902 | 17..850 | 4140 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10878772..10879605 | 850..17 | 4140 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:45:26 has no hits.
BS01277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:33 Download gff for
BS01277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-PA | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:55 Download gff for
BS01277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7704-PA | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:52:57 Download gff for
BS01277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 60..902 | 8..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:16:06 Download gff for
BS01277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 60..902 | 8..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:16:06 Download gff for
BS01277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10878772..10879614 | 8..850 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:52:57 Download gff for
BS01277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6766277..6767119 | 8..850 | 99 | | Minus |
BS01277.complete Sequence
2147 bp assembled on 2007-10-05
GenBank Submission: FJ634583
> BS01277.complete
GAAGTTATCAGTCGACATGAGCCTGGAAGTGAGCAATATAAACGGGGGAA
ACGGTACTCAATTGTCCCACGACAAGCGTGAGCTGCTGTGCCTGCTGAAA
CTCATCAAAAAGTACCAGCTGAAGAGCACTGAGGAGCTGCTCTGCCAAGA
GGCGAATGTGAGCAGTGTGGAATTGTCGGAAATCAGCGAAAGTGATGTTC
AGCAGGTGCTGGGCGCAGTTTTGGGAGCTGGCGATGCCAACCGGGAGCGG
AAACATGTCCAATCTCCGGCGCAGGGTCATAAACAGTCCGCGGTGACGGA
GGCCAATGCTGCAGAGGAACTGGCCAAGTTCATCGACGACGACAGCTTTG
ATGCTCAGCACTATGAGCAGGCATACAAGGAGCTGCGCACTTTCGTTGAG
GACTCCCTGGACATATACAAGCATGAGCTGTCCATGGTTCTGTACCCAAT
TCTGGTGCAGATCTACTTCAAGATCCTCGCCAGTGGACTAAGGGAGAAGG
CCAAAGAATTCATTGAGAAGTACAAATGCGATCTCGACGGCTACTACATA
GAGGGTCTTTTCAACCTTCTTTTGCTGTCTAAGCCCGAGGAGCTGCTGGA
GAATGACCTCGTAGTAGCCATGGAGCAGGATAAGTTTGTCATTCGCATGT
CCAGGGACTCGCACTCTCTGTTCAAGCGACACATTCAGGATCGCCGGCAG
GAAGTGGTGGCAGATATTGTTTCCAAGTACTTGCATTTCGACACATACGA
GGGCATGGCGCGCAACAAGCTGCAGTGCGTCGCCACCGCGGGCTCGCACC
TCGGAGAGGCCAAGCGACAGGACAACAAAATGCGGGTGTACTACGGACTG
CTCAAGGAGGTGGACTTTCAGACTCTGACCACTCCAGCGCCGGCACCAGA
GGAGGAGGACGATGATCCGGATGCCCCGGATCGTCCGAAAAAGAAAAAGC
CAAAAAAGGATCCCCTGCTGTCGAAAAAGTCCAAGTCGGATCCGAATGCT
CCATCCATCGACAGAATTCCCCTGCCGGAACTGAAGGATTCGGACAAGTT
GCTAAAGCTTAAGGCTCTCAGGGAAGCCAGCAAGCGTTTAGCCCTCAGCA
AGGATCAACTGCCCTCTGCCGTCTTCTACACGGTGCTTAATTCCCATCAG
GGCGTAACCTGTGCCGAGATTTCAGACGATTCCACGATGTTGGCCTGTGG
ATTTGGCGATTCTAGCGTGAGGATTTGGTCATTGACGCCCGCGAAGCTGC
GTACGCTGAAGGATGCAGATTCCCTTCGCGAACTGGACAAGGAATCGGCG
GATATCAATGTGCGTATGCTGGATGACCGAAGTGGTGAGGTAACCAGGAG
CTTAATGGGTCACACCGGACCCGTATACCGCTGTGCCTTTGCCCCCGAGA
TGAACCTGTTGCTCTCATGTTCCGAGGACAGCACCATAAGGCTGTGGTCT
CTGCTCACCTGGTCCTGCGTAGTCACCTACCGCGGGCACGTTTACCCGGT
GTGGGATGTTCGCTTTGCGCCGCATGGCTACTATTTTGTTTCTTGTTCGT
ACGACAAAACTGCTCGTCTGTGGGCCACGGATTCCAATCAAGCGTTGCGC
GTATTCGTGGGTCACTTGTCGGACGTGGATTGTGTACAATTTCATCCCAA
TTCCAATTATGTGGCCACCGGTTCTAGCGATCGCACGGTACGCCTGTGGG
ACAACATGACCGGTCAGTCGGTACGCCTGATGACGGGCCACAAGGGATCG
GTGAGTTCTCTGGCCTTCTCCGCCTGCGGCCGGTATCTGGCCTCGGGTTC
AGTAGATCACAATATCATCATCTGGGATCTGTCGAACGGATCCCTGGTCA
CCACCCTGTTGAGGCACACTAGCACTGTGACCACGATCACCTTTAGTCGC
GATGGAACAGTCCTGGCTGCAGCCGGCTTGGATAACAATCTAACTCTGTG
GGACTTTCACAAGGTTACCGAAGACTATATCAGCAATCACATCACTGTGT
CGCACCATCAGGATGAGAACGACGAGGACGTCTACCTCATGCGTACTTTC
CCCAGCAAGAACTCGCCATTTGTCAGCCTGCACTTTACGCGCCGAAATCT
CCTGATGTGCGTGGGTCTATTCAAGAGTTAGAAGCTTTCTAGACCAT
BS01277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf5-RA | 2115 | CG7704-PA | 1..2115 | 17..2131 | 10575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf5-RA | 2362 | CG7704-RA | 69..2187 | 17..2135 | 10580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10877487..10879605 | 2135..17 | 10580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:53:25 has no hits.
BS01277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:10 Download gff for
BS01277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 1..2115 | 17..2131 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:50:43 Download gff for
BS01277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 57..2184 | 8..2135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:02 Download gff for
BS01277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 69..2183 | 17..2131 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:11 Download gff for
BS01277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 57..2184 | 8..2135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:57 Download gff for
BS01277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 69..2183 | 17..2131 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:57 Download gff for
BS01277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10877491..10879605 | 17..2131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:02 Download gff for
BS01277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6764996..6767110 | 17..2131 | 100 | | Minus |
BS01277.pep Sequence
Translation from 16 to 2130
> BS01277.pep
MSLEVSNINGGNGTQLSHDKRELLCLLKLIKKYQLKSTEELLCQEANVSS
VELSEISESDVQQVLGAVLGAGDANRERKHVQSPAQGHKQSAVTEANAAE
ELAKFIDDDSFDAQHYEQAYKELRTFVEDSLDIYKHELSMVLYPILVQIY
FKILASGLREKAKEFIEKYKCDLDGYYIEGLFNLLLLSKPEELLENDLVV
AMEQDKFVIRMSRDSHSLFKRHIQDRRQEVVADIVSKYLHFDTYEGMARN
KLQCVATAGSHLGEAKRQDNKMRVYYGLLKEVDFQTLTTPAPAPEEEDDD
PDAPDRPKKKKPKKDPLLSKKSKSDPNAPSIDRIPLPELKDSDKLLKLKA
LREASKRLALSKDQLPSAVFYTVLNSHQGVTCAEISDDSTMLACGFGDSS
VRIWSLTPAKLRTLKDADSLRELDKESADINVRMLDDRSGEVTRSLMGHT
GPVYRCAFAPEMNLLLSCSEDSTIRLWSLLTWSCVVTYRGHVYPVWDVRF
APHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNYVA
TGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYLASGSVDHNI
IIWDLSNGSLVTTLLRHTSTVTTITFSRDGTVLAAAGLDNNLTLWDFHKV
TEDYISNHITVSHHQDENDEDVYLMRTFPSKNSPFVSLHFTRRNLLMCVG
LFKS*
BS01277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf5-PA | 704 | CG7704-PA | 1..704 | 1..704 | 3652 | 100 | Plus |
| can-PA | 942 | CG6577-PA | 247..876 | 44..697 | 883 | 33 | Plus |
| wda-PA | 743 | CG4448-PA | 322..698 | 305..651 | 462 | 28.7 | Plus |
| wds-PB | 361 | CG17437-PB | 66..354 | 371..644 | 353 | 29.8 | Plus |
| wds-PA | 361 | CG17437-PA | 66..354 | 371..644 | 353 | 29.8 | Plus |
| wds-PB | 361 | CG17437-PB | 67..272 | 445..649 | 328 | 34.5 | Plus |
