Clone Sequence Records
BS01279.3prime Sequence
822 bp (671 high quality bases) assembled on 2005-11-29
> BS01279.3prime
ATGGTCTAGAAAGCTTCTATAAGCCCAGGATTTTCTGTCCAGTTTGGTCG
CGCATGGCGTCAGACTTATTGTTTTGGATATTGGTGGCCAACTCGTCATC
CTCTTCGATTGGCAATTGCTTATTGCTCGCGGCTGCCCTCTTCTTTTTAG
CTTTTTCCGCAGGCGGTTGGCTTGTTCTGCTGGGATCGTGAATCCTTGAA
TGTCGCTTGAGATCGCCTGAGACTCGAAATTTCTTTTCACAGATGGAACA
CTCGTACGGCCGCTCGCCCGTGTGCACTTTAATATGACTGAGCAGGTAGG
AGCTGGCCCGGAAGGTCTTGTCACAATACTGGCAGGCGTAGTTCTTCTCC
CTGGTGTGGATTCTTCTGTGGACAACCAGGGAGTAGCGCCGGGAAAAACT
CTTTCCGCAAAATTCGCACATGTGCGCCTTGACGTCGCTGTGCCGCGAGA
TGATGTGGTACTTCAGGTCACCCCACTGCCGAAACTGAAACTCGCACTTG
TCGCATTTAAAGGGTTTCACGCCGGAATGTGTCCTTTCGTGAGCCTTTAG
CGCACTCTGCGTGTAGAAGGATCTCTCGCAGCTGTCGCATTTGTGAGATC
TCTCCTGATTGTGCGTATACTGATGGTACTTGAGGGCATTGTACGAGTTG
AAATCGCGATTGCACTTGTCGCAGAAATGTTTCCTCCTTGTCTTGTTCTC
TGCCTCCTCGGTTAAACTCGTATCCAAAACCTCCATCTGAAAACATTCAT
TTGGCTCTTCAGCATCGGGATCGCCTTCCTCGAACGACGAAGCTGGTCGG
CTATCGGTCATGTCATCCTCTT
BS01279.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3407-PA | 2145 | CG3407-RA | 1340..2145 | 822..17 | 4030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3407-RA | 2418 | CG3407-RA | 1420..2225 | 822..17 | 4030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3810994..3811505 | 17..528 | 2560 | 100 | Plus |
| 2L | 23513712 | 2L | 3811571..3811864 | 529..822 | 1470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:10:05 has no hits.
BS01279.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:36 Download gff for
BS01279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-PA | 1340..2145 | 17..822 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:13:59 Download gff for
BS01279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-PA | 1340..2145 | 17..822 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:15:16 Download gff for
BS01279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-RA | 1420..2232 | 12..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:54:40 Download gff for
BS01279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-RA | 1420..2232 | 12..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:54:40 Download gff for
BS01279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3810987..3811505 | 12..528 | 99 | <- | Plus |
| 2L | 3811571..3811864 | 529..822 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:15:16 Download gff for
BS01279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3810987..3811505 | 12..528 | 99 | <- | Plus |
| arm_2L | 3811571..3811864 | 529..822 | 100 | | Plus |
BS01279.5prime Sequence
838 bp (697 high quality bases) assembled on 2005-11-29
> BS01279.5prime
GAAGTTATCAGTCGACATGGAGCGCAAGGAAGTGGACACCCAGCAGTTCA
TCGACCATACGCTGCTGGCGAACCACTTCATCATGGATCTGATAGATCAG
ACCTACAAATCCGAAGGACCCACGAATCTGAGCACGAATCCCAGTTCCGG
CAACTCCGAGAGCGGAGTGGGTTACGTGGAAAAGGAATCGCTGACGCCGG
AGCTGAATTTCCACAACACCATCTTTCAGTTTGTGAACAAATCATCGCCA
GAAAATGATGTTGTACCCCACCAGGTGGATGCGCAGCCCACATTTCCGGC
CCTGGCCATTGAGCCCACAGTGCCCATCGACGTGTCCACAGGTCTACACG
AGGACGAGGATCTCCTCTATGCGCACAACAACGCCTCCTGCACGAACGCC
CGCAAGGTGCTGCCCCACAAGAAACGCATTTCGCGGAAGCTCAAAGGCAA
CATAGACCCCGAACTGGACCACCAGCACAAGCATGTCCAGGATGTGGCAC
CCTCTTCCCTGTATAGCTGTGAAATATGCGGCTATGCTGTGCACACCCAA
TTGGACTTCTTTGCCCATCTGAAGCAGCACTACGAGCCCACCGTTCTGGA
GCAGCGCCTGGTCGTCCAGGATCCCCAGCAACAGCACCAGCAAAAGGAAC
CCCTCGACATGTGTGGTTTGTCTGCGCAGGATAAGCTGCAACAGGAGCAG
GCCAAATTGGATCAGGTTTTTCAGGACGTGCAGCTTAATTTTGAGAACTT
TCACAACATCAGTCACCATGTGAACGATGTTGCCAACGTCGGAGTGAATA
TGGTGCTGCATGGACAAGCCACGGACAAATTAAATGCC
BS01279.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3407-PA | 2145 | CG3407-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3407-RA | 2418 | CG3407-RA | 81..902 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3812595..3813221 | 685..59 | 3135 | 100 | Minus |
| 2L | 23513712 | 2L | 3812382..3812536 | 838..684 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 3813289..3813330 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:22:57 has no hits.
BS01279.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:37 Download gff for
BS01279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-PA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:00 Download gff for
BS01279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-PA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:10:33 Download gff for
BS01279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-RA | 75..902 | 10..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:51:25 Download gff for
BS01279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-RA | 75..902 | 10..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:51:25 Download gff for
BS01279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3812382..3812534 | 686..838 | 100 | <- | Minus |
| 2L | 3812595..3813221 | 59..685 | 100 | <- | Minus |
| 2L | 3813289..3813336 | 10..58 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:10:33 Download gff for
BS01279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3812382..3812534 | 686..838 | 100 | <- | Minus |
| arm_2L | 3812595..3813221 | 59..685 | 100 | <- | Minus |
| arm_2L | 3813289..3813336 | 10..58 | 92 | | Minus |
BS01279.complete Sequence
2177 bp assembled on 2007-10-17
GenBank Submission: FJ634584
> BS01279.complete
GAAGTTATCAGTCGACATGGAGCGCAAGGAAGTGGACACCCAGCAGTTCA
TCGACCATACGCTGCTGGCGAACCACTTCATCATGGATCTGATAGATCAG
ACCTACAAATCCGAAGGACCCACGAATCTGAGCACGAATCCCAGTTCCGG
CAACTCCGAGAGCGGAGTGGGTTACGTGGAAAAGGAATCGCTGACGCCGG
AGCTGAATTTCCACAACACCATCTTTCAGTTTGTGAACAAATCATCGCCA
GAAAATGATGTTGTACCCCACCAGGTGGATGCGCAGCCCACATTTCCGGC
CCTGGCCATTGAGCCCACAGTGCCCATCGACGTGTCCACAGGTCTACACG
AGGACGAGGATCTCCTCTATGCGCACAACAACGCCTCCTGCACGAACGCC
CGCAAGGTGCTGCCCCACAAGAAACGCATTTCGCGGAAGCTCAAAGGCAA
CATAGACCCCGAACTGGACCACCAGCACAAGCATGTCCAGGATGTGGCAC
CCTCTTCCCTGTATAGCTGTGAAATATGCGGCTATGCTGTGCACACCCAA
TTGGACTTCTTTGCCCATCTGAAGCAGCACTACGAGCCCACCGTTCTGGA
GCAGCGCCTGGTCGTCCAGGATCCCCAGCAACAGCACCAGCAAAAGGAAC
CCCTCGACATGTGTGGTTTGTCTGCGCAGGATAAGCTGCAACAGGAGCAG
GCCAAATTGGATCAGGTTTTTCAGGACGTGCAGCTTAATTTTGAGAACTT
TCACAACATCAGTCACCATGTGAACGATGTTGCCAACGTCGGAGTGAATA
TGGTGCTGCATGGACAAGCCACGGACAAATTAAATGCCGTGGTGGTTAAC
ACCAGCAGCACTCCGAATTCTGTACCCGTGGTGGATGACGTCGAGTTCAG
CGATACGGAAGACATGCTCGAGGGTATCCGCAATGTGGTGGACAAGGTTT
CAATAGAAGACACCTGCGATGAACTGGTGGATCTTGAATTGACCTCCAGC
GGAATGACGGCACCCTGGTTTAATAACAACTTCAGGGATATCACATTTCC
GGCTCTTCTGCTGCCAGGAGAGCCGCCACCAGCTTCTTCAGAGCCAGCTA
CTCCACTGCTTAAAGAGAATCCCCATGTAGGCGACCACATGGCACTCGAT
TTTCTTAGTCCCGAGAAGGCGGACCCTCAAGAGGAAGCAAAACTGGAGAA
AACACTGTCTAAAGCCTGCGAGCCCAATGAGCAAACCTTGTTAGTTGCAC
CACCTGCCTGCCAAACACCACCGATTCCAACTGTTCCACCAGCCAACTCA
TCCATTGAGCAGCTGCGCAGATCTCCCCTAGAACTAAGTGAAGCCTTCAA
GTTGGAAGAGGATGACATGACCGATAGCCGACCAGCTTCGTCGTTCGAGG
AAGGCGATCCCGATGCTGAAGAGCCAAATGAATGTTTTCAGATGGAGGTT
TTGGATACGAGTTTAACCGAGGAGGCAGAGAACAAGACAAGGAGGAAACA
TTTCTGCGACAAGTGCAATCGCGATTTCAACTCGTACAATGCCCTCAAGT
ACCATCAGTATACGCACAATCAGGAGAGATCTCACAAATGCGACAGCTGC
GAGAGATCCTTCTACACGCAGAGTGCGCTAAAGGCTCACGAAAGGACACA
TTCCGGCGTGAAACCCTTTAAATGCGACAAGTGCGAGTTTCAGTTTCGGC
AGTGGGGTGACCTGAAGTACCACATCATCTCGCGGCACAGCGACGTCAAG
GCGCACATGTGCGAATTTTGCGGAAAGAGTTTTTCCCGGCGCTACTCCCT
GGTTGTCCACAGAAGAATCCACACCAGGGAGAAGAACTACGCCTGCCAGT
ATTGTGACAAGACCTTCCGGGCCAGCTCCTACCTGCTCAGTCATATTAAA
GTGCACACGGGCGAGCGGCCGTACGAGTGTTCCATCTGTGAAAAGAAATT
TCGAGTCTCAGGCGATCTCAAGCGACATTCAAGGATTCACGATCCCAGCA
GAACAAGCCAACCGCCTGCGGAAAAAGCTAAAAAGAAGAGGGCAGCCGCG
AGCAATAAGCAATTGCCAATCGAAGAGGATGACGAGTTGGCCACCAATAT
CCAAAACAATAAGTCTGACGCCATGCGCGACCAAACTGGACAGAAAATCC
TGGGCTTATAGAAGCTTTCTAGACCAT
BS01279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3407-RA | 2145 | CG3407-PA | 1..2145 | 17..2161 | 10725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3407-RA | 2418 | CG3407-RA | 81..2225 | 17..2161 | 10725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3811571..3812536 | 1649..684 | 4830 | 100 | Minus |
| 2L | 23513712 | 2L | 3812595..3813221 | 685..59 | 3135 | 100 | Minus |
| 2L | 23513712 | 2L | 3810994..3811505 | 2161..1650 | 2560 | 100 | Minus |
| 2L | 23513712 | 2L | 3813289..3813330 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:42:28 has no hits.
BS01279.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:03:03 Download gff for
BS01279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-RA | 1..2145 | 17..2161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:31:46 Download gff for
BS01279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-RA | 72..2229 | 10..2166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:16 Download gff for
BS01279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-RA | 81..2225 | 17..2161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:04 Download gff for
BS01279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-RA | 78..2222 | 17..2161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:44 Download gff for
BS01279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-RA | 81..2225 | 17..2161 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:44 Download gff for
BS01279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3810994..3811505 | 1650..2161 | 100 | <- | Minus |
| 2L | 3811571..3812534 | 686..1649 | 100 | <- | Minus |
| 2L | 3812595..3813221 | 59..685 | 100 | <- | Minus |
| 2L | 3813289..3813330 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:16 Download gff for
BS01279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3810994..3811505 | 1650..2161 | 100 | <- | Minus |
| arm_2L | 3811571..3812534 | 686..1649 | 100 | <- | Minus |
| arm_2L | 3812595..3813221 | 59..685 | 100 | <- | Minus |
| arm_2L | 3813289..3813330 | 17..58 | 100 | | Minus |
BS01279.pep Sequence
Translation from 16 to 2160
> BS01279.pep
MERKEVDTQQFIDHTLLANHFIMDLIDQTYKSEGPTNLSTNPSSGNSESG
VGYVEKESLTPELNFHNTIFQFVNKSSPENDVVPHQVDAQPTFPALAIEP
TVPIDVSTGLHEDEDLLYAHNNASCTNARKVLPHKKRISRKLKGNIDPEL
DHQHKHVQDVAPSSLYSCEICGYAVHTQLDFFAHLKQHYEPTVLEQRLVV
QDPQQQHQQKEPLDMCGLSAQDKLQQEQAKLDQVFQDVQLNFENFHNISH
HVNDVANVGVNMVLHGQATDKLNAVVVNTSSTPNSVPVVDDVEFSDTEDM
LEGIRNVVDKVSIEDTCDELVDLELTSSGMTAPWFNNNFRDITFPALLLP
GEPPPASSEPATPLLKENPHVGDHMALDFLSPEKADPQEEAKLEKTLSKA
CEPNEQTLLVAPPACQTPPIPTVPPANSSIEQLRRSPLELSEAFKLEEDD
MTDSRPASSFEEGDPDAEEPNECFQMEVLDTSLTEEAENKTRRKHFCDKC
NRDFNSYNALKYHQYTHNQERSHKCDSCERSFYTQSALKAHERTHSGVKP
FKCDKCEFQFRQWGDLKYHIISRHSDVKAHMCEFCGKSFSRRYSLVVHRR
IHTREKNYACQYCDKTFRASSYLLSHIKVHTGERPYECSICEKKFRVSGD
LKRHSRIHDPSRTSQPPAEKAKKKRAAASNKQLPIEEDDELATNIQNNKS
DAMRDQTGQKILGL*
BS01279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:16:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3407-PA | 714 | CG3407-PA | 1..714 | 1..714 | 3807 | 100 | Plus |
| CG15436-PA | 346 | CG15436-PA | 92..325 | 433..667 | 381 | 34.6 | Plus |
| Clamp-PA | 561 | CG1832-PA | 348..551 | 482..689 | 363 | 36.5 | Plus |
| Clamp-PB | 566 | CG1832-PB | 367..556 | 497..689 | 357 | 37.3 | Plus |
| CG7963-PB | 354 | CG7963-PB | 184..351 | 492..659 | 345 | 38.1 | Plus |
| Clamp-PB | 566 | CG1832-PB | 312..447 | 518..662 | 229 | 34.5 | Plus |
| CG15436-PA | 346 | CG15436-PA | 183..341 | 469..627 | 215 | 29.8 | Plus |
