Clone Sequence Records
BS01284.3prime Sequence
873 bp (819 high quality bases) assembled on 2005-11-29
> BS01284.3prime
ATGGTCTAGAAAGCTTCTAGATGACGCGGTTGACCAGCGGCATCTTGCGC
CTGTTGTAGGTGGGCGGATGCTGCTGCGGCTGTATGACTTGCTGCACCTT
CACTTTCTGGCCGTATTGCTGTTCCAACTCGCCAGCAGGACCAATTGCAT
AGTTAATGTCGACGCGAGCCCGTTTCAATGCCGGCTGCTGGTTGTAGCCA
TCGGTGGCATTCAGATCGGCAGGGTTCAACTCAATGATGTGCTGGTCATT
CGAGATAATTCGACGCACTGACTCCTTATCATCCTCTATGTCGATTGCGT
CGTATAGATCCCCGACCTCTATATCGAAGTCGTTACTTTTCTGACCAAGT
AGTGGATGGTTGATGGGTAGGTTGTTTGCCTGGTTTCCGTTGGCATGACG
CTCATCTTCCGCATCAAAATCGTTGATTATTTGCTCATCATCATCCCCGT
CCTCCTCCTCGTCTTCCTCTTCTACCAGCATTGCATCCACCATAGTGTCC
TCGAATTCGTGTTCCTCCAGATCCGAAGACTCCTCAATTTCCGATTGCGA
GTCCAGCTCTACATCCGAGTCTGCCGATCCGTGCTTCATCTCTCCCCTTT
CCAGGGACTCCAGATGCTGAGGATATACCATGGCTCCACGTATGGCAGCC
GGATCCTTGCGCGACCACTTTTGCACCTCCTCGTCCATCTTGTTGATACG
ATCGGGATTCATGGCCCAACGGCAGCCCTTTCTCTGGTTGCCATTCGTCG
CTGGTCTTTCGATCTTCTCAAAGCATTTGTTTAAAGACAGGTTGTGACGC
ACACTGTTCTTCCAGCCGCTGGGGGCATTCTCGAAGTAAGGGAAATGCTG
GCATAGGAAACTATATATTTCCG
BS01284.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4029-PA | 2160 | jumu-RA | 1304..2160 | 873..17 | 4285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jumu-RA | 3860 | CG4029-RA | 1650..2507 | 873..16 | 4290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10359342..10359900 | 873..315 | 2795 | 100 | Minus |
| 3R | 32079331 | 3R | 10359957..10360259 | 318..16 | 1515 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 19:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader5 | 4038 | invader5 INVADER5 4038bp | 1254..1301 | 523..570 | 114 | 70.8 | Plus |
BS01284.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:42 Download gff for
BS01284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-PA | 1304..2160 | 17..873 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:07 Download gff for
BS01284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4029-PA | 1304..2160 | 17..873 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:27:55 Download gff for
BS01284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-RA | 1650..2509 | 13..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:35 Download gff for
BS01284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-RA | 1650..2509 | 13..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:35 Download gff for
BS01284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10359342..10359898 | 317..873 | 100 | -> | Minus |
| 3R | 10359959..10360261 | 13..316 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:27:55 Download gff for
BS01284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6185064..6185620 | 317..873 | 100 | -> | Minus |
| arm_3R | 6185681..6185983 | 13..316 | 99 | | Minus |
BS01284.5prime Sequence
793 bp (770 high quality bases) assembled on 2005-11-29
> BS01284.5prime
GAAGTTATCAGTCGACATGTTCGAACTAGAGGATTATTCGAGCGGCATAC
ATGAGGGATTCTTCAGCAAATATGCGGATGCGGCTGGACCCTCGCTAGAC
TTTTATGTATCCGACTCGATGCAGGAGATGCTGAACGTGGACATCCGCGC
AGAGATCGCCAATGTGGTGGGCAGTTCCAGCAGCGACTTGACCTCGTCCC
TGGACCAAACACTGGAAGCTATATCCGCGATAAACAACAACCAGAGCAAT
GGAAACAGCAGCCAGTCAGCTTCTTACAATGCGAATGCGAATTTTCTGAC
CAGCAGCGGACTCCACGCCTCACCCACAGCGAAATGGATGGGCTCGTCGG
CCAATTTTTGGTCCAACAGCGATTACTATGCGGATCTGGGGGCATGTGTG
AACCCCATTTCCGTAATGCCACTGATAAATTCGACTTCTGCAGGAATGTT
CTCGCCAAAAAAAAACAAGACAGCCTCAAGTACGCAGGGAAGATCGGGAG
CGGTGCCCTCGTCGCCCAGCGCCGAAAGGGATCAGCACAAATCGCACCTG
ACATTTTCGCCGGCTCAGATGAAGGTCAGTGCAGGATCCATGCGGCGGGA
CCAGGTGATGGCACACATTCCCAAGCAAATATCCGTGGTCACGGGCACCG
GAACCACAGCGCCCGCCACAATGGCCACCAATTCGGTGCTTCAACGGCGT
AATTCCTCGGCCGTGGATGCTGTACGTAAGGATTTGGTCACAGAGCTGCG
TAAAGCACAATCCAGTCCAGTGCCCCATTCCTTGGAGGAGCTG
BS01284.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4029-PA | 2160 | jumu-RA | 1..777 | 17..793 | 3860 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jumu-RA | 3860 | CG4029-RA | 345..1123 | 15..793 | 3880 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10358098..10358815 | 76..793 | 3575 | 99.9 | Plus |
| 3R | 32079331 | 3R | 10350526..10350588 | 15..77 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:53:23 has no hits.
BS01284.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:43 Download gff for
BS01284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-PA | 1..777 | 17..793 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:08 Download gff for
BS01284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4029-PA | 1..777 | 17..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:59:13 Download gff for
BS01284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-RA | 342..1123 | 12..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:14 Download gff for
BS01284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-RA | 342..1123 | 12..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:14 Download gff for
BS01284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10350523..10350587 | 12..76 | 98 | -> | Plus |
| 3R | 10358099..10358815 | 77..793 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:59:13 Download gff for
BS01284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6176245..6176309 | 12..76 | 98 | -> | Plus |
| arm_3R | 6183821..6184537 | 77..793 | 99 | | Plus |
BS01284.complete Sequence
2192 bp (2192 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ638764
> BS01284.complete
GAAGTTATCAGTCGACATGTTCGAACTAGAGGATTATTCGAGCGGCATAC
ATGAGGGATTCTTCAGCAAATATGCGGATGCGGCTGGACCCTCGCTAGAC
TTTTATGTATCCGACTCGATGCAGGAGATGCTGAACGTGGACATCCGCGC
AGAGATCGCCAATGTGGTGGGCAGTTCCAGCAGCGACTTGACCTCGTCCC
TGGACCAAACACTGGAAGCTATATCCGCGATAAACAACAACCAGAGCAAT
GGAAACAGCAGCCAGTCAGCTTCTTACAATGCGAATGCGAATTTTCTGAC
CAGCAGCGGACTCCACGCCTCACCCACAGCGAAATGGATGGGCTCGTCGG
CCAATTTTTGGTCCAACAGCGATTACTATGCGGATCTGGGGGCATGTGTG
AACCCCATTTCCGTAATGCCACTGATAAATTCGACTTCTGCAGGAATGTT
CTCGCCAAAAAAAAACAAGACAGCCTCAAGTACGCAGGGAAGATCGGGAG
CGGTGCCCTCGTCGCCCAGCGCCGAAAGGGATCAGCACAAATCGCACCTG
ACATTTTCGCCGGCTCAGATGAAGGTCAGTGCAGGATCCATGCGGCGGGA
CCAGGTGATGGCACACATTCCCAAGCAAATATCCGTGGTCACGGGCACCG
GAACCACAGCGCCCGCCACAATGGCCACCAATTCGGTGCTTCAACGGCGT
AATTCCTCGGCCGTGGATGCTGTACGTAAGGATTTGGTCACAGAGCTGCG
TAAAGCACAATCCAGTCCAGTGCCCAATTCCTTGGAGGAGCTGGGCAAGG
GAAAAGGATCAACACTGCTAAATGCCAGTGTTGGGGCGACCAACACCATT
AAACTGGCGCCCGGTATCGGTGGGTTAACCTTTGCCAACAGTGCAGCCTA
CCAGAAGCTGAAGCAAACATCCTTGGTTAAGTCACCAGGCGGTATTTCGC
CAGGAGCAGGATCCAATATGGGTCTCAAGCGGGAGGACTCAAACAAGCGA
GGACTGCAGGCCAGCACCACGCCAAAGAGCATTGCTTCGGCGGCAAACTC
GCCGCATCATCAAATGCAGAGCAACTACAGCCTGGGATCACCTTCATCAC
TGTCCTCCTCATCTGCATCCTCTCCCCTAGGGAATGTGAGCAACCTGGTC
AACATAGCGAATAACAATACAAGCGGAGCTGGATCCGGCTTGGTGAAGCC
TCTGCAGCAAAAGGTTAAACTGCCACCCGTGGGCAGTCCATTTCCCAAAC
CAGCATACTCGTACTCCTGCCTCATCGCTTTGGCCCTCAAGAATTCGCGA
GCAGGATCCCTTCCGGTCTCGGAAATATATAGTTTCCTATGCCAGCATTT
CCCTTACTTCGAGAATGCCCCCAGCGGCTGGAAGAACAGTGTGCGTCACA
ACCTGTCTTTAAACAAATGCTTTGAGAAGATCGAAAGACCAGCGACGAAT
GGCAACCAGAGAAAGGGCTGCCGTTGGGCCATGAATCCCGATCGTATCAA
CAAGATGGACGAGGAGGTGCAAAAGTGGTCGCGCAAGGATCCGGCTGCCA
TACGTGGAGCCATGGTATATCCTCAGCATCTGGAGTCCCTGGAAAGGGGA
GAGATGAAGCACGGATCGGCAGACTCGGATGTAGAGCTGGACTCGCAATC
GGAAATTGAGGAGTCTTCGGATCTGGAGGAACACGAATTCGAGGACACTA
TGGTGGATGCAATGCTGGTAGAAGAGGAAGACGAGGAGGAGGACGGGGAT
GATGATGAGCAAATAATCAACGATTTTGATGCGGAAGATGAGCGTCATGC
CAACGGAAACCAGGCAAACAACCTACCCATCAACCATCCACTACTTGGTC
AGAAAAGTAACGACTTCGATATAGAGGTCGGGGATCTATACGACGCAATC
GACATAGAGGATGATAAGGAGTCAGTGCGTCGAATTATCTCGAATGACCA
GCACATCATTGAGTTGAACCCTGCCGATCTGAATGCCACCGATGGCTACA
ACCAGCAGCCGGCATTGAAACGGGCTCGCGTCGACATTAACTATGCAATT
GGTCCTGCTGGCGAGTTGGAACAGCAATACGGCCAGAAAGTGAAGGTGCA
GCAAGTCATACAGCCGCAGCAGCATCCGCCCACCTACAACAGGCGCAAGA
TGCCGCTGGTCAACCGCGTCATCTAGAAGCTTTCTAGACCAT
BS01284.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jumu-RA | 2160 | CG4029-PA | 1..2160 | 17..2176 | 10800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jumu-RA | 3860 | CG4029-RA | 345..2507 | 15..2177 | 10815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10358098..10359900 | 76..1878 | 9015 | 100 | Plus |
| 3R | 32079331 | 3R | 10359957..10360259 | 1875..2177 | 1515 | 100 | Plus |
| 3R | 32079331 | 3R | 10350526..10350588 | 15..77 | 315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader5 | 4038 | invader5 INVADER5 4038bp | 1254..1301 | 1670..1623 | 114 | 70.8 | Minus |
BS01284.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:17 Download gff for
BS01284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-RA | 1..2160 | 17..2176 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:23 Download gff for
BS01284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-RA | 340..2507 | 12..2180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:44 Download gff for
BS01284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-RA | 352..2506 | 22..2176 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:17 Download gff for
BS01284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-RA | 340..2507 | 12..2180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:43 Download gff for
BS01284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-RA | 352..2506 | 22..2176 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:43 Download gff for
BS01284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10350533..10350587 | 22..76 | 100 | -> | Plus |
| 3R | 10358099..10359898 | 77..1876 | 100 | -> | Plus |
| 3R | 10359959..10360258 | 1877..2176 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:44 Download gff for
BS01284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6176255..6176309 | 22..76 | 100 | -> | Plus |
| arm_3R | 6183821..6185620 | 77..1876 | 100 | -> | Plus |
| arm_3R | 6185681..6185980 | 1877..2176 | 100 | | Plus |
BS01284.pep Sequence
Translation from 16 to 2175
> BS01284.pep
MFELEDYSSGIHEGFFSKYADAAGPSLDFYVSDSMQEMLNVDIRAEIANV
VGSSSSDLTSSLDQTLEAISAINNNQSNGNSSQSASYNANANFLTSSGLH
ASPTAKWMGSSANFWSNSDYYADLGACVNPISVMPLINSTSAGMFSPKKN
KTASSTQGRSGAVPSSPSAERDQHKSHLTFSPAQMKVSAGSMRRDQVMAH
IPKQISVVTGTGTTAPATMATNSVLQRRNSSAVDAVRKDLVTELRKAQSS
PVPNSLEELGKGKGSTLLNASVGATNTIKLAPGIGGLTFANSAAYQKLKQ
TSLVKSPGGISPGAGSNMGLKREDSNKRGLQASTTPKSIASAANSPHHQM
QSNYSLGSPSSLSSSSASSPLGNVSNLVNIANNNTSGAGSGLVKPLQQKV
KLPPVGSPFPKPAYSYSCLIALALKNSRAGSLPVSEIYSFLCQHFPYFEN
APSGWKNSVRHNLSLNKCFEKIERPATNGNQRKGCRWAMNPDRINKMDEE
VQKWSRKDPAAIRGAMVYPQHLESLERGEMKHGSADSDVELDSQSEIEES
SDLEEHEFEDTMVDAMLVEEEDEEEDGDDDEQIINDFDAEDERHANGNQA
NNLPINHPLLGQKSNDFDIEVGDLYDAIDIEDDKESVRRIISNDQHIIEL
NPADLNATDGYNQQPALKRARVDINYAIGPAGELEQQYGQKVKVQQVIQP
QQHPPTYNRRKMPLVNRVI*
BS01284.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jumu-PA | 719 | CG4029-PA | 1..719 | 1..719 | 3691 | 100 | Plus |
| CHES-1-like-PC | 1267 | CG12690-PC | 338..779 | 50..493 | 310 | 28 | Plus |
| CHES-1-like-PD | 1268 | CG12690-PD | 338..779 | 50..493 | 310 | 28 | Plus |
| CHES-1-like-PB | 1268 | CG12690-PB | 338..779 | 50..493 | 310 | 28 | Plus |
| CHES-1-like-PA | 1268 | CG12690-PA | 338..779 | 50..493 | 310 | 28 | Plus |
