Clone BS01285 Report

Search the DGRC for BS01285

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:12
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptHr96-RA
Protein status:BS01285.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01285.3prime Sequence

853 bp (785 high quality bases) assembled on 2005-11-29

> BS01285.3prime
ATGGTCTAGAAAGCTTCTAGTGATTTTTCAAATCGAATATTTCACGCAGC
AAGGGCTCCACCTGGGATGGGTTAACATTCAAATAGACATTAATTATGAA
CTTGTTCAGACGCTCCACATCTGAAATCTTTTGGATTAGCTTGATAAACG
CGTTTCTCGCCTCACAGCCAGAATAAACACTCTCCAGATATCTTCGCAGA
AGATAATAGTAGGAATTCTGTTCCAATCTAATCACGTCTTTGTGTATCAC
TCGCGATCGAGCCGAGGTAAAAAGGACAATGGCACACATGATCAGGATTA
TGTTCTCGTCCATGCGCCACTTCTCGTCAAACGTTGTGATGAACTTTTGG
TGCTCCTCGTAGATATTGCCTTCGGCAAACTTGAGCAGGTCAGTGCGTAT
GTTGCCCATGTTCTCTTTGGTATGGGGTACCTTCCAGGCGGCGCGATCGT
CGTCGTAAATCATTACGGAGCGCATTATCATCATTTCTGTGCAGCCACCT
TTGAGTAGGGCCACCTGGTCCTCCTGGCACATGTCACGGAATGCTGTAAT
CTTCTTGGCCATTTTGATAAGCCGCTTGATGGCCACCGCCGTCAGATTGA
TCAGCTGCAATAGCTTTGGGTTGTGGCGAGTGTCGTCGGGCTTAATGCGA
TCATCGCCCATCATCAGGGCGCTGAGGTCCTCGTCCACGGGATCATAAAG
AGCCTCGCTGGCCAGTCGCAGCTCCCGCAGCTTCATTTGCTCCGCCTCGT
TTAGCTCGCGATCCAACTGCTGGGTGGATGGGGCGCAGATGGGGTGCTGC
ANGTGCGGCTGGCTATTGTTTGCAGCCGAATTGCATCCACCGTACGTAGA
CTG

BS01285.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11783-PA 2172 Hr96-RA 1336..2172 853..17 4141 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
Hr96-RA 2834 CG11783-RA 1645..2482 853..16 4164 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25028246..25028461 642..427 1080 100 Minus
3R 32079331 3R 25028527..25028741 432..218 1075 100 Minus
3R 32079331 3R 25027012..25027224 853..641 1039 99.1 Minus
3R 32079331 3R 25028796..25028999 219..16 1020 100 Minus
Blast to na_te.dros performed on 2015-01-30 16:47:31 has no hits.

BS01285.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:44 Download gff for BS01285.3prime
Subject Subject Range Query Range Percent Splice Strand
Hr96-PA 1336..2172 17..853 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:10 Download gff for BS01285.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11783-PA 1336..2172 17..853 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:29:30 Download gff for BS01285.3prime
Subject Subject Range Query Range Percent Splice Strand
Hr96-RA 1645..2482 16..853 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:39 Download gff for BS01285.3prime
Subject Subject Range Query Range Percent Splice Strand
Hr96-RA 1645..2482 16..853 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:39 Download gff for BS01285.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25027012..25027224 641..853 99 -> Minus
3R 25028248..25028457 431..640 100 -> Minus
3R 25028529..25028741 218..430 100 -> Minus
3R 25028798..25028999 16..217 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:29:30 Download gff for BS01285.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20852734..20852946 641..853 99 -> Minus
arm_3R 20853970..20854179 431..640 100 -> Minus
arm_3R 20854251..20854463 218..430 100 -> Minus
arm_3R 20854520..20854721 16..217 100   Minus

BS01285.5prime Sequence

891 bp (790 high quality bases) assembled on 2005-11-29

> BS01285.5prime
GAAGTTATCAGTCGACATGTCGCCGCCGAAGAACTGCGCGGTGTGCGGGG
ACAAGGCTCTGGGCTACAACTTCAATGCGGTCACCTGCGAGAGCTGCAAG
GCGTTCTTCCGACGGAACGCGCTGGCCAAGAAGCAGTTCACCTGCCCCTT
CAACCAAAACTGCGACATCACTGTGGTCACTCGACGCTTCTGCCAGAAAT
GCCGCCTGCGCAAGTGCCTGGATATCGGGATGAAGAGTGAAAACATTATG
TCCGAGGAGGACAAGCTGATCAAGCGGCGCAAGATCGAGACCAACCGGGC
CAAGCGACGCCTCATGGAGAACGGCACGGATGCGTGCGACGCCGATGGCG
GCGAGGAAAGGGATCACAAAGCGCCGGCGGATAGCAGCAGCAGCAACCTT
GACCACTACTCGGGGTCACAGGACTCGCAGAGCTGCGGCTCGGCGGACAG
CGGGGCCAATGGGTGCTCCGGCAGACAGGCCAGTTCGCCGGGCACACAGG
TCAATCCGCTTCAGATGACGGCCGAGAAGATAGTCGACCAGATCGTATCC
GACCCGGATCGAGCCTCGCAGGCCATCAACCGGTTGATGCGCACGCAGAA
AGAGGCTATATCGGTGATGGAGAAGGTAATCAGCTCACAAAAGGACGCCT
TAAGGCTGGTGTCGCATTTGATCGACTATCCAGGCGACGCACTCAAGATC
ATTTCAAAGTTTATGAACTCGCCCTTTAACGCGCTGACAGTATTCACCAA
ATTCATGAGCTCACCCACGGACGGCGTTGAAATTATCTCAAAGATAGTTG
ATTCGCCCGCGGACGTGGTGGAGTTCATGCAGAACTTGATGCACTCGCCA
GAAGACGCCATCGATATAATGAACAAGTTCATGAATACCCC

BS01285.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11783-PA 2172 Hr96-RA 1..875 17..891 4350 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
Hr96-RA 2834 CG11783-RA 304..1184 11..891 4375 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25025538..25026211 11..684 3355 99.9 Plus
3R 32079331 3R 25026398..25026551 738..891 755 99.4 Plus
3R 32079331 3R 25026276..25026335 681..740 300 100 Plus
Blast to na_te.dros performed 2015-02-12 20:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
jockey 5020 jockey DMLINEJA 5020bp Derived from M22874 (g157823) (Rel. 47, Last updated, Version 5). 3180..3226 628..674 109 70.2 Plus

BS01285.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:45 Download gff for BS01285.5prime
Subject Subject Range Query Range Percent Splice Strand
Hr96-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:11 Download gff for BS01285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11783-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:24:10 Download gff for BS01285.5prime
Subject Subject Range Query Range Percent Splice Strand
Hr96-RA 304..1184 11..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:23 Download gff for BS01285.5prime
Subject Subject Range Query Range Percent Splice Strand
Hr96-RA 304..1184 11..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:23 Download gff for BS01285.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25025538..25026210 11..683 99 -> Plus
3R 25026279..25026335 684..740 100 -> Plus
3R 25026401..25026551 741..891 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:10 Download gff for BS01285.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20851260..20851932 11..683 99 -> Plus
arm_3R 20852001..20852057 684..740 100 -> Plus
arm_3R 20852123..20852273 741..891 99   Plus

BS01285.complete Sequence

2204 bp (2204 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ634586

> BS01285.complete
GAAGTTATCAGTCGACATGTCGCCGCCGAAGAACTGCGCGGTGTGCGGGG
ACAAGGCTCTGGGCTACAACTTCAATGCGGTCACCTGCGAGAGCTGCAAG
GCGTTCTTCCGACGGAACGCGCTGGCCAAGAAGCAGTTCACCTGCCCCTT
CAACCAAAACTGCGACATCACTGTGGTCACTCGACGCTTCTGCCAGAAAT
GCCGCCTGCGCAAGTGCCTGGATATCGGGATGAAGAGTGAAAACATTATG
TCCGAGGAGGACAAGCTGATCAAGCGGCGCAAGATCGAGACCAACCGGGC
CAAGCGACGCCTCATGGAGAACGGCACGGATGCGTGCGACGCCGATGGCG
GCGAGGAAAGGGATCACAAAGCGCCGGCGGATAGCAGCAGCAGCAACCTT
GACCACTACTCGGGGTCACAGGACTCGCAGAGCTGCGGCTCGGCGGACAG
CGGGGCCAATGGGTGCTCCGGCAGACAGGCCAGTTCGCCGGGCACACAGG
TCAATCCGCTTCAGATGACGGCCGAGAAGATAGTCGACCAGATCGTATCC
GACCCGGATCGAGCCTCGCAGGCCATCAACCGGTTGATGCGCACGCAGAA
AGAGGCTATATCGGTGATGGAGAAGGTAATCAGCTCACAAAAGGACGCCT
TAAGGCTGGTGTCGCATTTGATCGACTATCCAGGCGACGCACTCAAGATC
ATTTCAAAGTTTATGAACTCGCCCTTTAACGCGCTGACAGTATTCACCAA
ATTCATGAGCTCACCCACGGACGGCGTTGAAATTATCTCAAAGATAGTTG
ATTCGCCCGCGGACGTGGTGGAGTTCATGCAGAACTTGATGCACTCGCCA
GAGGACGCCATCGATATAATGAACAAGTTCATGAATACCCCAGCGGAGGC
GCTGCGCATTCTTAACCGAATCCTAAGCGGCGGAGGAGCGAACGCAGCCC
AGCAGACAGCAGACCGCAAGCCATTGCTGGACAAGGAGCCGGCGGTGAAG
CCTGCAGCGCCAGCGGAGCGAGCTGATACTGTCATTCAAAGCATGCTGGG
CAACAGTCCGCCAATTTCGCCACATGATGCTGCCGTGGATCTGCAGTACC
ACTCGCCCGGTGTCGGGGAGCAGCCCAGTACATCGAGTAGCCACCCCTTG
CCTTACATAGCCAACTCGCCGGACTTCGATCTGAAGACCTTCATGCAGAC
CAACTACAACGACGAGCCCAGTCTGGACAGTGATTTTAGCATTAACTCAA
TCGAATCGGTGCTATCCGAGGTGATCCGCATTGAGTACCAGGCCTTCAAT
AGCATACAACAAGCGGCATCGCGCGTAAAGGAGGAGATGTCCTACGGCAC
TCAGTCTACGTACGGTGGATGCAATTCGGCTGCAAACAATAGCCAGCCGC
ACCTGCAGCAACCCATCTGCGCCCCATCCACCCAGCAGTTGGATCGCGAG
CTAAACGAGGCGGAGCAAATGAAGCTGCGGGAGCTGCGACTGGCCAGCGA
GGCTCTTTATGATCCCGTGGACGAGGACCTCAGCGCCCTGATGATGGGCG
ATGATCGCATTAAGCCCGACGACACTCGCCACAACCCAAAGCTATTGCAG
CTGATCAATCTGACGGCGGTGGCCATCAAGCGGCTTATCAAAATGGCCAA
GAAGATTACAGCATTCCGTGACATGTGCCAGGAGGACCAGGTGGCCCTAC
TCAAAGGTGGCTGCACAGAAATGATGATAATGCGCTCCGTAATGATTTAC
GACGACGATCGCGCCGCCTGGAAGGTACCCCATACCAAAGAGAACATGGG
CAACATACGCACTGACCTGCTCAAGTTTGCCGAAGGCAATATCTACGAGG
AGCACCAAAAGTTCATCACAACGTTTGACGAGAAGTGGCGCATGGACGAG
AACATAATCCTGATCATGTGTGCCATTGTCCTTTTTACCTCGGCTCGATC
GCGAGTGATACACAAAGACGTGATTAGATTGGAACAGAATTCCTACTATT
ATCTTCTGCGAAGATATCTGGAGAGTGTTTATTCTGGCTGTGAGGCGAGA
AACGCGTTTATCAAGCTAATCCAAAAGATTTCAGATGTGGAGCGTCTGAA
CAAGTTCATAATTAATGTCTATTTGAATGTTAACCCATCCCAGGTGGAGC
CCTTGCTGCGTGAAATATTCGATTTGAAAAATCACTAGAAGCTTTCTAGA
CCAT

BS01285.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
Hr96-RA 2172 CG11783-PA 1..2172 17..2188 10860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Hr96-RA 2834 CG11783-RA 304..2482 11..2189 10880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25026398..25027224 738..1564 4135 100 Plus
3R 32079331 3R 25025538..25026211 11..684 3355 99.9 Plus
3R 32079331 3R 25028246..25028461 1563..1778 1080 100 Plus
3R 32079331 3R 25028527..25028741 1773..1987 1075 100 Plus
3R 32079331 3R 25028796..25028999 1986..2189 1020 100 Plus
3R 32079331 3R 25026276..25026335 681..740 300 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:18:14 has no hits.

BS01285.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:18 Download gff for BS01285.complete
Subject Subject Range Query Range Percent Splice Strand
Hr96-RA 1..2172 17..2188 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:25 Download gff for BS01285.complete
Subject Subject Range Query Range Percent Splice Strand
Hr96-RA 300..2478 11..2189 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:45 Download gff for BS01285.complete
Subject Subject Range Query Range Percent Splice Strand
Hr96-RA 310..2481 17..2188 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:18 Download gff for BS01285.complete
Subject Subject Range Query Range Percent Splice Strand
Hr96-RA 300..2478 11..2189 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:17 Download gff for BS01285.complete
Subject Subject Range Query Range Percent Splice Strand
Hr96-RA 310..2481 17..2188 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:17 Download gff for BS01285.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25028529..25028741 1775..1987 100 -> Plus
3R 25028798..25028998 1988..2188 100   Plus
3R 25026279..25026335 684..740 100 -> Plus
3R 25026401..25027224 741..1564 100 -> Plus
3R 25025544..25026210 17..683 100 -> Plus
3R 25028248..25028457 1565..1774 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:45 Download gff for BS01285.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20851266..20851932 17..683 100 -> Plus
arm_3R 20852001..20852057 684..740 100 -> Plus
arm_3R 20852123..20852946 741..1564 100 -> Plus
arm_3R 20853970..20854179 1565..1774 100 -> Plus
arm_3R 20854251..20854463 1775..1987 100 -> Plus
arm_3R 20854520..20854720 1988..2188 100   Plus

BS01285.pep Sequence

Translation from 16 to 2187

> BS01285.pep
MSPPKNCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCD
ITVVTRRFCQKCRLRKCLDIGMKSENIMSEEDKLIKRRKIETNRAKRRLM
ENGTDACDADGGEERDHKAPADSSSSNLDHYSGSQDSQSCGSADSGANGC
SGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAINRLMRTQKEAISV
MEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTKFMSSP
TDGVEIISKIVDSPADVVEFMQNLMHSPEDAIDIMNKFMNTPAEALRILN
RILSGGGANAAQQTADRKPLLDKEPAVKPAAPAERADTVIQSMLGNSPPI
SPHDAAVDLQYHSPGVGEQPSTSSSHPLPYIANSPDFDLKTFMQTNYNDE
PSLDSDFSINSIESVLSEVIRIEYQAFNSIQQAASRVKEEMSYGTQSTYG
GCNSAANNSQPHLQQPICAPSTQQLDRELNEAEQMKLRELRLASEALYDP
VDEDLSALMMGDDRIKPDDTRHNPKLLQLINLTAVAIKRLIKMAKKITAF
RDMCQEDQVALLKGGCTEMMIMRSVMIYDDDRAAWKVPHTKENMGNIRTD
LLKFAEGNIYEEHQKFITTFDEKWRMDENIILIMCAIVLFTSARSRVIHK
DVIRLEQNSYYYLLRRYLESVYSGCEARNAFIKLIQKISDVERLNKFIIN
VYLNVNPSQVEPLLREIFDLKNH*

BS01285.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
Hr96-PA 723 CG11783-PA 1..723 1..723 3728 100 Plus
EcR-PC 669 CG1765-PC 55..165 7..112 245 39.6 Plus
EcR-PE 849 CG1765-PE 235..345 7..112 245 39.6 Plus
EcR-PD 849 CG1765-PD 235..345 7..112 245 39.6 Plus
EcR-PA 849 CG1765-PA 235..345 7..112 245 39.6 Plus