Clone Sequence Records
BS01285.3prime Sequence
853 bp (785 high quality bases) assembled on 2005-11-29
> BS01285.3prime
ATGGTCTAGAAAGCTTCTAGTGATTTTTCAAATCGAATATTTCACGCAGC
AAGGGCTCCACCTGGGATGGGTTAACATTCAAATAGACATTAATTATGAA
CTTGTTCAGACGCTCCACATCTGAAATCTTTTGGATTAGCTTGATAAACG
CGTTTCTCGCCTCACAGCCAGAATAAACACTCTCCAGATATCTTCGCAGA
AGATAATAGTAGGAATTCTGTTCCAATCTAATCACGTCTTTGTGTATCAC
TCGCGATCGAGCCGAGGTAAAAAGGACAATGGCACACATGATCAGGATTA
TGTTCTCGTCCATGCGCCACTTCTCGTCAAACGTTGTGATGAACTTTTGG
TGCTCCTCGTAGATATTGCCTTCGGCAAACTTGAGCAGGTCAGTGCGTAT
GTTGCCCATGTTCTCTTTGGTATGGGGTACCTTCCAGGCGGCGCGATCGT
CGTCGTAAATCATTACGGAGCGCATTATCATCATTTCTGTGCAGCCACCT
TTGAGTAGGGCCACCTGGTCCTCCTGGCACATGTCACGGAATGCTGTAAT
CTTCTTGGCCATTTTGATAAGCCGCTTGATGGCCACCGCCGTCAGATTGA
TCAGCTGCAATAGCTTTGGGTTGTGGCGAGTGTCGTCGGGCTTAATGCGA
TCATCGCCCATCATCAGGGCGCTGAGGTCCTCGTCCACGGGATCATAAAG
AGCCTCGCTGGCCAGTCGCAGCTCCCGCAGCTTCATTTGCTCCGCCTCGT
TTAGCTCGCGATCCAACTGCTGGGTGGATGGGGCGCAGATGGGGTGCTGC
ANGTGCGGCTGGCTATTGTTTGCAGCCGAATTGCATCCACCGTACGTAGA
CTG
BS01285.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11783-PA | 2172 | Hr96-RA | 1336..2172 | 853..17 | 4141 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hr96-RA | 2834 | CG11783-RA | 1645..2482 | 853..16 | 4164 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25028246..25028461 | 642..427 | 1080 | 100 | Minus |
3R | 32079331 | 3R | 25028527..25028741 | 432..218 | 1075 | 100 | Minus |
3R | 32079331 | 3R | 25027012..25027224 | 853..641 | 1039 | 99.1 | Minus |
3R | 32079331 | 3R | 25028796..25028999 | 219..16 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:47:31 has no hits.
BS01285.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:44 Download gff for
BS01285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-PA | 1336..2172 | 17..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:10 Download gff for
BS01285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11783-PA | 1336..2172 | 17..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:29:30 Download gff for
BS01285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 1645..2482 | 16..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:39 Download gff for
BS01285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 1645..2482 | 16..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:39 Download gff for
BS01285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25027012..25027224 | 641..853 | 99 | -> | Minus |
3R | 25028248..25028457 | 431..640 | 100 | -> | Minus |
3R | 25028529..25028741 | 218..430 | 100 | -> | Minus |
3R | 25028798..25028999 | 16..217 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:29:30 Download gff for
BS01285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20852734..20852946 | 641..853 | 99 | -> | Minus |
arm_3R | 20853970..20854179 | 431..640 | 100 | -> | Minus |
arm_3R | 20854251..20854463 | 218..430 | 100 | -> | Minus |
arm_3R | 20854520..20854721 | 16..217 | 100 | | Minus |
BS01285.5prime Sequence
891 bp (790 high quality bases) assembled on 2005-11-29
> BS01285.5prime
GAAGTTATCAGTCGACATGTCGCCGCCGAAGAACTGCGCGGTGTGCGGGG
ACAAGGCTCTGGGCTACAACTTCAATGCGGTCACCTGCGAGAGCTGCAAG
GCGTTCTTCCGACGGAACGCGCTGGCCAAGAAGCAGTTCACCTGCCCCTT
CAACCAAAACTGCGACATCACTGTGGTCACTCGACGCTTCTGCCAGAAAT
GCCGCCTGCGCAAGTGCCTGGATATCGGGATGAAGAGTGAAAACATTATG
TCCGAGGAGGACAAGCTGATCAAGCGGCGCAAGATCGAGACCAACCGGGC
CAAGCGACGCCTCATGGAGAACGGCACGGATGCGTGCGACGCCGATGGCG
GCGAGGAAAGGGATCACAAAGCGCCGGCGGATAGCAGCAGCAGCAACCTT
GACCACTACTCGGGGTCACAGGACTCGCAGAGCTGCGGCTCGGCGGACAG
CGGGGCCAATGGGTGCTCCGGCAGACAGGCCAGTTCGCCGGGCACACAGG
TCAATCCGCTTCAGATGACGGCCGAGAAGATAGTCGACCAGATCGTATCC
GACCCGGATCGAGCCTCGCAGGCCATCAACCGGTTGATGCGCACGCAGAA
AGAGGCTATATCGGTGATGGAGAAGGTAATCAGCTCACAAAAGGACGCCT
TAAGGCTGGTGTCGCATTTGATCGACTATCCAGGCGACGCACTCAAGATC
ATTTCAAAGTTTATGAACTCGCCCTTTAACGCGCTGACAGTATTCACCAA
ATTCATGAGCTCACCCACGGACGGCGTTGAAATTATCTCAAAGATAGTTG
ATTCGCCCGCGGACGTGGTGGAGTTCATGCAGAACTTGATGCACTCGCCA
GAAGACGCCATCGATATAATGAACAAGTTCATGAATACCCC
BS01285.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11783-PA | 2172 | Hr96-RA | 1..875 | 17..891 | 4350 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hr96-RA | 2834 | CG11783-RA | 304..1184 | 11..891 | 4375 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25025538..25026211 | 11..684 | 3355 | 99.9 | Plus |
3R | 32079331 | 3R | 25026398..25026551 | 738..891 | 755 | 99.4 | Plus |
3R | 32079331 | 3R | 25026276..25026335 | 681..740 | 300 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 20:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey | 5020 | jockey DMLINEJA 5020bp Derived from M22874 (g157823) (Rel. 47, Last updated, Version 5). | 3180..3226 | 628..674 | 109 | 70.2 | Plus |
BS01285.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:45 Download gff for
BS01285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:11 Download gff for
BS01285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11783-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:24:10 Download gff for
BS01285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 304..1184 | 11..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:23 Download gff for
BS01285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 304..1184 | 11..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:23 Download gff for
BS01285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25025538..25026210 | 11..683 | 99 | -> | Plus |
3R | 25026279..25026335 | 684..740 | 100 | -> | Plus |
3R | 25026401..25026551 | 741..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:10 Download gff for
BS01285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20851260..20851932 | 11..683 | 99 | -> | Plus |
arm_3R | 20852001..20852057 | 684..740 | 100 | -> | Plus |
arm_3R | 20852123..20852273 | 741..891 | 99 | | Plus |
BS01285.complete Sequence
2204 bp (2204 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634586
> BS01285.complete
GAAGTTATCAGTCGACATGTCGCCGCCGAAGAACTGCGCGGTGTGCGGGG
ACAAGGCTCTGGGCTACAACTTCAATGCGGTCACCTGCGAGAGCTGCAAG
GCGTTCTTCCGACGGAACGCGCTGGCCAAGAAGCAGTTCACCTGCCCCTT
CAACCAAAACTGCGACATCACTGTGGTCACTCGACGCTTCTGCCAGAAAT
GCCGCCTGCGCAAGTGCCTGGATATCGGGATGAAGAGTGAAAACATTATG
TCCGAGGAGGACAAGCTGATCAAGCGGCGCAAGATCGAGACCAACCGGGC
CAAGCGACGCCTCATGGAGAACGGCACGGATGCGTGCGACGCCGATGGCG
GCGAGGAAAGGGATCACAAAGCGCCGGCGGATAGCAGCAGCAGCAACCTT
GACCACTACTCGGGGTCACAGGACTCGCAGAGCTGCGGCTCGGCGGACAG
CGGGGCCAATGGGTGCTCCGGCAGACAGGCCAGTTCGCCGGGCACACAGG
TCAATCCGCTTCAGATGACGGCCGAGAAGATAGTCGACCAGATCGTATCC
GACCCGGATCGAGCCTCGCAGGCCATCAACCGGTTGATGCGCACGCAGAA
AGAGGCTATATCGGTGATGGAGAAGGTAATCAGCTCACAAAAGGACGCCT
TAAGGCTGGTGTCGCATTTGATCGACTATCCAGGCGACGCACTCAAGATC
ATTTCAAAGTTTATGAACTCGCCCTTTAACGCGCTGACAGTATTCACCAA
ATTCATGAGCTCACCCACGGACGGCGTTGAAATTATCTCAAAGATAGTTG
ATTCGCCCGCGGACGTGGTGGAGTTCATGCAGAACTTGATGCACTCGCCA
GAGGACGCCATCGATATAATGAACAAGTTCATGAATACCCCAGCGGAGGC
GCTGCGCATTCTTAACCGAATCCTAAGCGGCGGAGGAGCGAACGCAGCCC
AGCAGACAGCAGACCGCAAGCCATTGCTGGACAAGGAGCCGGCGGTGAAG
CCTGCAGCGCCAGCGGAGCGAGCTGATACTGTCATTCAAAGCATGCTGGG
CAACAGTCCGCCAATTTCGCCACATGATGCTGCCGTGGATCTGCAGTACC
ACTCGCCCGGTGTCGGGGAGCAGCCCAGTACATCGAGTAGCCACCCCTTG
CCTTACATAGCCAACTCGCCGGACTTCGATCTGAAGACCTTCATGCAGAC
CAACTACAACGACGAGCCCAGTCTGGACAGTGATTTTAGCATTAACTCAA
TCGAATCGGTGCTATCCGAGGTGATCCGCATTGAGTACCAGGCCTTCAAT
AGCATACAACAAGCGGCATCGCGCGTAAAGGAGGAGATGTCCTACGGCAC
TCAGTCTACGTACGGTGGATGCAATTCGGCTGCAAACAATAGCCAGCCGC
ACCTGCAGCAACCCATCTGCGCCCCATCCACCCAGCAGTTGGATCGCGAG
CTAAACGAGGCGGAGCAAATGAAGCTGCGGGAGCTGCGACTGGCCAGCGA
GGCTCTTTATGATCCCGTGGACGAGGACCTCAGCGCCCTGATGATGGGCG
ATGATCGCATTAAGCCCGACGACACTCGCCACAACCCAAAGCTATTGCAG
CTGATCAATCTGACGGCGGTGGCCATCAAGCGGCTTATCAAAATGGCCAA
GAAGATTACAGCATTCCGTGACATGTGCCAGGAGGACCAGGTGGCCCTAC
TCAAAGGTGGCTGCACAGAAATGATGATAATGCGCTCCGTAATGATTTAC
GACGACGATCGCGCCGCCTGGAAGGTACCCCATACCAAAGAGAACATGGG
CAACATACGCACTGACCTGCTCAAGTTTGCCGAAGGCAATATCTACGAGG
AGCACCAAAAGTTCATCACAACGTTTGACGAGAAGTGGCGCATGGACGAG
AACATAATCCTGATCATGTGTGCCATTGTCCTTTTTACCTCGGCTCGATC
GCGAGTGATACACAAAGACGTGATTAGATTGGAACAGAATTCCTACTATT
ATCTTCTGCGAAGATATCTGGAGAGTGTTTATTCTGGCTGTGAGGCGAGA
AACGCGTTTATCAAGCTAATCCAAAAGATTTCAGATGTGGAGCGTCTGAA
CAAGTTCATAATTAATGTCTATTTGAATGTTAACCCATCCCAGGTGGAGC
CCTTGCTGCGTGAAATATTCGATTTGAAAAATCACTAGAAGCTTTCTAGA
CCAT
BS01285.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hr96-RA | 2172 | CG11783-PA | 1..2172 | 17..2188 | 10860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hr96-RA | 2834 | CG11783-RA | 304..2482 | 11..2189 | 10880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25026398..25027224 | 738..1564 | 4135 | 100 | Plus |
3R | 32079331 | 3R | 25025538..25026211 | 11..684 | 3355 | 99.9 | Plus |
3R | 32079331 | 3R | 25028246..25028461 | 1563..1778 | 1080 | 100 | Plus |
3R | 32079331 | 3R | 25028527..25028741 | 1773..1987 | 1075 | 100 | Plus |
3R | 32079331 | 3R | 25028796..25028999 | 1986..2189 | 1020 | 100 | Plus |
3R | 32079331 | 3R | 25026276..25026335 | 681..740 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:18:14 has no hits.
BS01285.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:18 Download gff for
BS01285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 1..2172 | 17..2188 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:25 Download gff for
BS01285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 300..2478 | 11..2189 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:45 Download gff for
BS01285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 310..2481 | 17..2188 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:18 Download gff for
BS01285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 300..2478 | 11..2189 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:17 Download gff for
BS01285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hr96-RA | 310..2481 | 17..2188 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:17 Download gff for
BS01285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25028529..25028741 | 1775..1987 | 100 | -> | Plus |
3R | 25028798..25028998 | 1988..2188 | 100 | | Plus |
3R | 25026279..25026335 | 684..740 | 100 | -> | Plus |
3R | 25026401..25027224 | 741..1564 | 100 | -> | Plus |
3R | 25025544..25026210 | 17..683 | 100 | -> | Plus |
3R | 25028248..25028457 | 1565..1774 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:45 Download gff for
BS01285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20851266..20851932 | 17..683 | 100 | -> | Plus |
arm_3R | 20852001..20852057 | 684..740 | 100 | -> | Plus |
arm_3R | 20852123..20852946 | 741..1564 | 100 | -> | Plus |
arm_3R | 20853970..20854179 | 1565..1774 | 100 | -> | Plus |
arm_3R | 20854251..20854463 | 1775..1987 | 100 | -> | Plus |
arm_3R | 20854520..20854720 | 1988..2188 | 100 | | Plus |
BS01285.pep Sequence
Translation from 16 to 2187
> BS01285.pep
MSPPKNCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCD
ITVVTRRFCQKCRLRKCLDIGMKSENIMSEEDKLIKRRKIETNRAKRRLM
ENGTDACDADGGEERDHKAPADSSSSNLDHYSGSQDSQSCGSADSGANGC
SGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAINRLMRTQKEAISV
MEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTKFMSSP
TDGVEIISKIVDSPADVVEFMQNLMHSPEDAIDIMNKFMNTPAEALRILN
RILSGGGANAAQQTADRKPLLDKEPAVKPAAPAERADTVIQSMLGNSPPI
SPHDAAVDLQYHSPGVGEQPSTSSSHPLPYIANSPDFDLKTFMQTNYNDE
PSLDSDFSINSIESVLSEVIRIEYQAFNSIQQAASRVKEEMSYGTQSTYG
GCNSAANNSQPHLQQPICAPSTQQLDRELNEAEQMKLRELRLASEALYDP
VDEDLSALMMGDDRIKPDDTRHNPKLLQLINLTAVAIKRLIKMAKKITAF
RDMCQEDQVALLKGGCTEMMIMRSVMIYDDDRAAWKVPHTKENMGNIRTD
LLKFAEGNIYEEHQKFITTFDEKWRMDENIILIMCAIVLFTSARSRVIHK
DVIRLEQNSYYYLLRRYLESVYSGCEARNAFIKLIQKISDVERLNKFIIN
VYLNVNPSQVEPLLREIFDLKNH*
BS01285.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hr96-PA | 723 | CG11783-PA | 1..723 | 1..723 | 3728 | 100 | Plus |
EcR-PC | 669 | CG1765-PC | 55..165 | 7..112 | 245 | 39.6 | Plus |
EcR-PE | 849 | CG1765-PE | 235..345 | 7..112 | 245 | 39.6 | Plus |
EcR-PD | 849 | CG1765-PD | 235..345 | 7..112 | 245 | 39.6 | Plus |
EcR-PA | 849 | CG1765-PA | 235..345 | 7..112 | 245 | 39.6 | Plus |