Clone Sequence Records
BS01288.5prime Sequence
771 bp (755 high quality bases) assembled on 2005-11-29
> BS01288.5prime
GAAGTTATCAGTCGACATGGGCAGCCAAAACTCGGACGACGACAGTGGTT
CATCCGGTTCGAGTCGAAGTGGAAGCCGCAGTGTCACGCCGCAAGGAGGT
AGTGCGCCCGGATCCCAACGCAGTCGCAGGTCGGGTAGTGGCAGCGATCG
TTCCCGATCGGGCTCCAGGTCTTCCCGATCCCGGTCCGGCTCTGGGTCTC
CGCGTAGTGCCAGGTCCGGGTCTGCAGAAAGCCGCCACTCGCAGCTGTCT
GGCTCCGCTCGTAGTAAGAGATCAAGATCTGCTCACAGTCGCAGGTCGGG
ATCTGCGCGTAGCCGTAAATCTGGAACTCCGGAATCTCCACAAAGTCACA
GATCAGGTTCGTTGCAAAGTCGCAAGTCAGGATCGCCTCAGAGTCGTAGA
TCTGGTTCTCCCCAAAGTCGCAAATCGGGATCTACTCACAGCCGCAGATC
CGGTTCGGCCCACAGTCGCAGATCGGGATCCGCTCGGAGTCGCAAATCTG
GTTCGGCACAAAGTGACCGCTCTGAGTCTCGATCGAGGTCTCATAGCGGT
TCACTCAAGGGCAACGAGGAATCGCGGTCTAATTCGCCCAATCTGCAAAT
TGACGTAGAGCGTGCCAATTCCAAGAGCGGCAGTCGCAGCAGAAGTAGGA
GCAGGAGTGGCAGTCGCACTTCCAGATCGCGTTCCAAGACGGGCACGCCG
TCGCCCAATAGAAGTCGTAGTGGCAGCGCATCCGGCTCCGGCAGCGATGT
GGGTGTGCTCCAGAAGAANGC
BS01288.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1433-PA | 2178 | Atu-RA | 1..742 | 17..758 | 3710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atu-RA | 2351 | CG1433-RA | 105..856 | 17..768 | 3730 | 99.7 | Plus |
Atu-RA | 2351 | CG1433-RA | 422..554 | 382..514 | 200 | 76.7 | Plus |
Atu-RA | 2351 | CG1433-RA | 470..602 | 334..466 | 200 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5613687..5614344 | 111..768 | 3260 | 99.7 | Plus |
3R | 32079331 | 3R | 5613559..5613623 | 47..111 | 325 | 100 | Plus |
3R | 32079331 | 3R | 5613910..5614042 | 382..514 | 200 | 76.7 | Plus |
3R | 32079331 | 3R | 5613958..5614090 | 334..466 | 200 | 76.7 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:10:42 has no hits.
BS01288.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:50 Download gff for
BS01288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atu-PA | 1..755 | 17..771 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:16 Download gff for
BS01288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1433-PA | 1..755 | 17..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:58 Download gff for
BS01288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atu-RA | 105..859 | 17..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:37 Download gff for
BS01288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atu-RA | 105..859 | 17..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:37 Download gff for
BS01288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5613462..5613492 | 17..47 | 100 | -> | Plus |
3R | 5613560..5613623 | 48..111 | 100 | -> | Plus |
3R | 5613688..5614347 | 112..771 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:58 Download gff for
BS01288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1439184..1439214 | 17..47 | 100 | -> | Plus |
arm_3R | 1439282..1439345 | 48..111 | 100 | -> | Plus |
arm_3R | 1439410..1440069 | 112..771 | 99 | | Plus |
BS01288.3prime Sequence
869 bp (795 high quality bases) assembled on 2005-11-29
> BS01288.3prime
ATGGTCTAGAAAGCTTTTAATCGTTGTCACTGCCCGATCCGCTGCCGGAA
CCACTGCCACTGCCGCTTCCACTGGCAGACTTGCTGCTGCCGCCGCCGCT
CTTCTGGCTGCCCTCGTTTTCGCTACCACTAGCGCTGCCCCCTTCTCCGC
CGCTCTTGTTGCTGTGGCCGCTCTTGGCGCTGCCGGCGTCCGATTCGCTG
TCGGAGTCGCGCAGTGCCTTGCTGGCCTTGGCCTTGTCCACCTTCTTGCT
GCGACGCGCCTCGAAGTCGGAGCCCTCGTCTTCGTCCGACGAGTAGATCG
TAGATGCCTTAACCTCCGCCTGGCCGGCACCAGAGCCCTTCTTATACCGG
TTCTTGATGGCACTCAGGCTGATGGCGTTCTCATCGTCGCTGCCTTCGTC
GTGCTGGTAAGACGAAGTGCCGCCTCCAATCAGTGGTTCGCCCGCGCCTG
GTTTCTTTTTCTTGGGCAGCGACTTGTGCTGATTGCGCATCGCCTGGCGC
AGCTTGGCCTCCTCCTCCCTGAGCTGCGTTGGCCTATCCGTGGTGGGATC
CTTGCCCACCTGCGTAAGAATCTTAATGCCACTGGTCTTGCTGGATCGAT
CGGCCAGCGACATGGTCATCTTCTTGTGCGTAAAGGACTCCGTGGAATGA
GGACGGAAAGTGAGCTTGGTCCTGAAGACCGACTGGCCCTGCAGACCCGT
TCCTTGGCGGACGAACAGATGATTGTGGTCACCTAACAGCGGCTGCCTGT
AGGCGTCGAAGATCTCGTTGCCCAGGTGAAGGGACATGCTGCCGTCGGAC
CAGCGCACGAATCGCGCATTAGACTCGCGCACCATGTCGCCCTTATTTGT
CATGTACTCTCGCCATCGG
BS01288.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1433-PA | 2178 | Atu-RA | 1326..2178 | 869..17 | 4215 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atu-RA | 2351 | CG1433-RA | 1430..2282 | 869..17 | 4235 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5615018..5615870 | 869..17 | 4235 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-11 11:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6943 | 189..39 | 154 | 57 | Minus |
BS01288.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:49 Download gff for
BS01288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atu-PA | 1326..2178 | 17..869 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:15 Download gff for
BS01288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1433-PA | 1326..2178 | 17..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:15:14 Download gff for
BS01288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atu-RA | 1430..2282 | 17..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:49:23 Download gff for
BS01288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atu-RA | 1430..2282 | 17..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:49:23 Download gff for
BS01288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5615018..5615870 | 17..869 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:15:14 Download gff for
BS01288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1440740..1441592 | 17..869 | 99 | | Minus |
BS01288.complete Sequence
2210 bp (2210 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634587
> BS01288.complete
GAAGTTATCAGTCGACATGGGCAGCCAAAACTCGGACGACGACAGTGGTT
CATCCGGTTCGAGTCGAAGTGGAAGCCGCAGTGTCACGCCGCAAGGAGGT
AGTGCGCCCGGATCCCAACGCAGTCGCAGGTCGGGTAGTGGCAGCGATCG
TTCCCGATCGGGCTCCAGGTCTTCCCGATCCCGGTCCGGCTCTGGGTCTC
CGCGTAGTGCCAGGTCCGGGTCTGCAGAAAGCCGCCACTCGCAGCTGTCT
GGCTCCGCTCGTAGTAAGAGATCAAGATCTGCTCACAGTCGCAGGTCGGG
ATCTGCGCGTAGCCGTAAATCTGGAACTCCGGAATCTCCACAAAGTCACA
GATCAGGTTCGTTGCAAAGTCGCAAGTCAGGATCGCCTCAGAGTCGTAGA
TCTGGTTCTCCCCAAAGTCGCAAATCGGGATCTACTCACAGCCGCAGATC
CGGTTCGGCCCACAGTCGCAGATCGGGATCCGCTCGGAGTCGCAAATCTG
GTTCGGCACAAAGTGACCGCTCTGAGTCTCGATCGAGGTCTCATAGCGGT
TCACTCAAGGGCAACGAGGAATCGCGGTCTAATTCGCCCAATCTGCAAAT
TGACGTAGAGCGTGCCAATTCCAAGAGCGGCAGTCGCAGCAGAAGTAGGA
GCAGGAGTGGCAGTCGCACTTCCAGATCGCGTTCCAAGACGGGCACGCCG
TCGCCCAATAGAAGTCGTAGTGGCAGCGCATCCGGCTCCGGCAGCGATGT
GGGTGTGCCCAAGAAGAAGGCACGCAAGGCGAGTGGCTCCGATCAAGAGA
AGAAAAAGAGCGGCAGCGATAGCGACATTGAGGAATCGCCCACCAAAGCT
AAGAAGTCACGGCTGATCGACACTGATAGCGATTCCAATCAGGATGTGGG
AAAGAAAGCTCCGGCTGCAGCTGACATATTTGGAGATGCCGATGATATAA
GTGACGATGAGGATGAGGCTGGACCAGCTGCCAGAAAATCCCCAGTGCGC
TCCAAGAGCCGCAGTCAAAGCAAGTCCCACTCCCACAGTCGTTCTATGAG
CCACTCGCGTTCCCGCTCCAGATCGCGATCCCGGGATAAAGTCGAGAGCC
AAGTAGAATCGGCGCCCAAGGAGGATGAGCCTGAACCGCTTCCGGAGACC
CGAATCGATGTGGAGATTCCGCGCATCTCTGCAGACCTGGGAAAAGAGCA
GCACTTTATCAAGCTTCCCAACTTTTTGTCAGTGGTCACGCATCCGTTTG
ATCCGGAAACCTACGAAGACGAGATCGACGAAGAGGAGACAATGGACGAG
GAGGGCAGACAGCGTATCAAGCTCAAAGTGAGCAACACTATCCGATGGCG
AGAGTACATGAACAATAAGGGCGACATGGTGCGCGAGTCTAATGCGCGAT
TCGTGCGCTGGTCCGACGGCAGCATGTCCCTTCACCTGGGCAACGAGATC
TTCGACGCCTACAGGCAGCCGCTGTTAGGTGACCACAATCATCTGTTCGT
CCGCCAAGGAACGGGTCTGCAGGGCCAGTCGGTCTTCAGGACCAAGCTCA
CTTTCCGTCCTCATTCCACGGAGTCCTTTACGCACAAGAAGATGACCATG
TCGCTGGCCGATCGATCCAGCAAGACCAGTGGCATTAAGATTCTTACGCA
GGTGGGCAAGGATCCCACCACGGATAGGCCAACGCAGCTCAGGGAGGAGG
AGGCCAAGCTGCGCCAGGCGATGCGCAATCAGCACAAGTCGCTGCCCAAG
AAAAAGAAACCAGGCGCGGGCGAACCACTGATTGGAGGCGGCACTTCGTC
TTACCAGCACGACGAAGGCAGCGACGATGAGAACGCCATCAGCCTGAGTG
CCATCAAGAACCGGTATAAGAAGGGCTCTGGTGCCGGCCAGGCGGAGGTT
AAGGCATCTACGATCTACTCGTCGGACGAAGACGAGGGCTCCGACTTCGA
GGCGCGTCGCAGCAAGAAGGTGGACAAGGCCAAGGCCAGCAAGGCACTGC
GCGACTCCGACAGCGAATCGGACGCCGGCAGCGCCAAGAGCGGCCACAGC
AACAAGAGCGGCGGAGAAGGGGGCAGCGCTAGTGGTAGCGAAAACGAGGG
CAGCCAGAAGAGCGGCGGCGGCAGCAGCAAGTCTGCCAGTGGAAGCGGCA
GTGGCAGTGGTTCCGGCAGCGGATCGGGCAGTGACAACGATTAAAAGCTT
TCTAGACCAT
BS01288.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atu-RA | 2178 | CG1433-PA | 1..2178 | 17..2194 | 10890 | 100 | Plus |
Atu-RA | 2178 | CG1433-PA | 318..450 | 382..514 | 200 | 76.7 | Plus |
Atu-RA | 2178 | CG1433-PA | 366..498 | 334..466 | 200 | 76.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atu-RA | 2351 | CG1433-RA | 105..2282 | 17..2194 | 10890 | 100 | Plus |
Atu-RA | 2351 | CG1433-RA | 470..602 | 334..466 | 200 | 76.7 | Plus |
Atu-RA | 2351 | CG1433-RA | 422..554 | 382..514 | 200 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5614574..5615870 | 898..2194 | 6485 | 100 | Plus |
3R | 32079331 | 3R | 5613687..5614475 | 111..899 | 3945 | 100 | Plus |
3R | 32079331 | 3R | 5613559..5613623 | 47..111 | 325 | 100 | Plus |
3R | 32079331 | 3R | 5613910..5614042 | 382..514 | 200 | 76.7 | Plus |
3R | 32079331 | 3R | 5613958..5614090 | 334..466 | 200 | 76.7 | Plus |
Blast to na_te.dros performed 2014-11-27 13:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6943 | 2022..2172 | 154 | 57 | Plus |
BS01288.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:19 Download gff for
BS01288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atu-RA | 1..2178 | 17..2194 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:27 Download gff for
BS01288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atu-RA | 99..2276 | 17..2194 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:35:54 Download gff for
BS01288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atu-RA | 105..2280 | 17..2192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:19 Download gff for
BS01288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atu-RA | 99..2276 | 17..2194 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:57 Download gff for
BS01288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atu-RA | 105..2280 | 17..2192 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:57 Download gff for
BS01288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5613462..5613492 | 17..47 | 100 | -> | Plus |
3R | 5613560..5613623 | 48..111 | 100 | -> | Plus |
3R | 5613688..5614474 | 112..898 | 100 | -> | Plus |
3R | 5614575..5615868 | 899..2192 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:35:54 Download gff for
BS01288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1439184..1439214 | 17..47 | 100 | -> | Plus |
arm_3R | 1439282..1439345 | 48..111 | 100 | -> | Plus |
arm_3R | 1439410..1440196 | 112..898 | 100 | -> | Plus |
arm_3R | 1440297..1441590 | 899..2192 | 100 | | Plus |
BS01288.pep Sequence
Translation from 16 to 2193
> BS01288.pep
MGSQNSDDDSGSSGSSRSGSRSVTPQGGSAPGSQRSRRSGSGSDRSRSGS
RSSRSRSGSGSPRSARSGSAESRHSQLSGSARSKRSRSAHSRRSGSARSR
KSGTPESPQSHRSGSLQSRKSGSPQSRRSGSPQSRKSGSTHSRRSGSAHS
RRSGSARSRKSGSAQSDRSESRSRSHSGSLKGNEESRSNSPNLQIDVERA
NSKSGSRSRSRSRSGSRTSRSRSKTGTPSPNRSRSGSASGSGSDVGVPKK
KARKASGSDQEKKKSGSDSDIEESPTKAKKSRLIDTDSDSNQDVGKKAPA
AADIFGDADDISDDEDEAGPAARKSPVRSKSRSQSKSHSHSRSMSHSRSR
SRSRSRDKVESQVESAPKEDEPEPLPETRIDVEIPRISADLGKEQHFIKL
PNFLSVVTHPFDPETYEDEIDEEETMDEEGRQRIKLKVSNTIRWREYMNN
KGDMVRESNARFVRWSDGSMSLHLGNEIFDAYRQPLLGDHNHLFVRQGTG
LQGQSVFRTKLTFRPHSTESFTHKKMTMSLADRSSKTSGIKILTQVGKDP
TTDRPTQLREEEAKLRQAMRNQHKSLPKKKKPGAGEPLIGGGTSSYQHDE
GSDDENAISLSAIKNRYKKGSGAGQAEVKASTIYSSDEDEGSDFEARRSK
KVDKAKASKALRDSDSESDAGSAKSGHSNKSGGEGGSASGSENEGSQKSG
GGSSKSASGSGSGSGSGSGSGSDND*
BS01288.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atu-PA | 725 | CG1433-PA | 1..725 | 1..725 | 3648 | 100 | Plus |
CG9915-PC | 820 | CG9915-PC | 117..554 | 2..359 | 400 | 37.4 | Plus |
CG9915-PB | 820 | CG9915-PB | 117..554 | 2..359 | 400 | 37.4 | Plus |
CG9915-PC | 820 | CG9915-PC | 102..580 | 10..474 | 384 | 35.3 | Plus |
CG9915-PB | 820 | CG9915-PB | 102..580 | 10..474 | 384 | 35.3 | Plus |
CG10887-PA | 676 | CG10887-PA | 34..675 | 75..716 | 383 | 25 | Plus |
CG9915-PC | 820 | CG9915-PC | 65..377 | 4..354 | 343 | 39.3 | Plus |
CG9915-PB | 820 | CG9915-PB | 65..377 | 4..354 | 343 | 39.3 | Plus |
CG9915-PC | 820 | CG9915-PC | 55..369 | 16..355 | 273 | 37.6 | Plus |
CG9915-PB | 820 | CG9915-PB | 55..369 | 16..355 | 273 | 37.6 | Plus |
CG2469-PA | 1150 | CG2469-PA | 898..1149 | 109..369 | 259 | 35.5 | Plus |
CG9915-PC | 820 | CG9915-PC | 61..319 | 102..356 | 202 | 30.6 | Plus |
CG9915-PB | 820 | CG9915-PB | 61..319 | 102..356 | 202 | 30.6 | Plus |
CG9915-PC | 820 | CG9915-PC | 49..268 | 105..356 | 168 | 33.9 | Plus |
CG9915-PB | 820 | CG9915-PB | 49..268 | 105..356 | 168 | 33.9 | Plus |