Clone BS01288 Report

Search the DGRC for BS01288

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:12
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptAtu-RA
Protein status:BS01288.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01288.5prime Sequence

771 bp (755 high quality bases) assembled on 2005-11-29

> BS01288.5prime
GAAGTTATCAGTCGACATGGGCAGCCAAAACTCGGACGACGACAGTGGTT
CATCCGGTTCGAGTCGAAGTGGAAGCCGCAGTGTCACGCCGCAAGGAGGT
AGTGCGCCCGGATCCCAACGCAGTCGCAGGTCGGGTAGTGGCAGCGATCG
TTCCCGATCGGGCTCCAGGTCTTCCCGATCCCGGTCCGGCTCTGGGTCTC
CGCGTAGTGCCAGGTCCGGGTCTGCAGAAAGCCGCCACTCGCAGCTGTCT
GGCTCCGCTCGTAGTAAGAGATCAAGATCTGCTCACAGTCGCAGGTCGGG
ATCTGCGCGTAGCCGTAAATCTGGAACTCCGGAATCTCCACAAAGTCACA
GATCAGGTTCGTTGCAAAGTCGCAAGTCAGGATCGCCTCAGAGTCGTAGA
TCTGGTTCTCCCCAAAGTCGCAAATCGGGATCTACTCACAGCCGCAGATC
CGGTTCGGCCCACAGTCGCAGATCGGGATCCGCTCGGAGTCGCAAATCTG
GTTCGGCACAAAGTGACCGCTCTGAGTCTCGATCGAGGTCTCATAGCGGT
TCACTCAAGGGCAACGAGGAATCGCGGTCTAATTCGCCCAATCTGCAAAT
TGACGTAGAGCGTGCCAATTCCAAGAGCGGCAGTCGCAGCAGAAGTAGGA
GCAGGAGTGGCAGTCGCACTTCCAGATCGCGTTCCAAGACGGGCACGCCG
TCGCCCAATAGAAGTCGTAGTGGCAGCGCATCCGGCTCCGGCAGCGATGT
GGGTGTGCTCCAGAAGAANGC

BS01288.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1433-PA 2178 Atu-RA 1..742 17..758 3710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Atu-RA 2351 CG1433-RA 105..856 17..768 3730 99.7 Plus
Atu-RA 2351 CG1433-RA 422..554 382..514 200 76.7 Plus
Atu-RA 2351 CG1433-RA 470..602 334..466 200 76.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5613687..5614344 111..768 3260 99.7 Plus
3R 32079331 3R 5613559..5613623 47..111 325 100 Plus
3R 32079331 3R 5613910..5614042 382..514 200 76.7 Plus
3R 32079331 3R 5613958..5614090 334..466 200 76.7 Plus
Blast to na_te.dros performed on 2015-02-02 12:10:42 has no hits.

BS01288.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:50 Download gff for BS01288.5prime
Subject Subject Range Query Range Percent Splice Strand
Atu-PA 1..755 17..771 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:16 Download gff for BS01288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1433-PA 1..755 17..771 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:58 Download gff for BS01288.5prime
Subject Subject Range Query Range Percent Splice Strand
Atu-RA 105..859 17..771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:37 Download gff for BS01288.5prime
Subject Subject Range Query Range Percent Splice Strand
Atu-RA 105..859 17..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:37 Download gff for BS01288.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5613462..5613492 17..47 100 -> Plus
3R 5613560..5613623 48..111 100 -> Plus
3R 5613688..5614347 112..771 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:58 Download gff for BS01288.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1439184..1439214 17..47 100 -> Plus
arm_3R 1439282..1439345 48..111 100 -> Plus
arm_3R 1439410..1440069 112..771 99   Plus

BS01288.3prime Sequence

869 bp (795 high quality bases) assembled on 2005-11-29

> BS01288.3prime
ATGGTCTAGAAAGCTTTTAATCGTTGTCACTGCCCGATCCGCTGCCGGAA
CCACTGCCACTGCCGCTTCCACTGGCAGACTTGCTGCTGCCGCCGCCGCT
CTTCTGGCTGCCCTCGTTTTCGCTACCACTAGCGCTGCCCCCTTCTCCGC
CGCTCTTGTTGCTGTGGCCGCTCTTGGCGCTGCCGGCGTCCGATTCGCTG
TCGGAGTCGCGCAGTGCCTTGCTGGCCTTGGCCTTGTCCACCTTCTTGCT
GCGACGCGCCTCGAAGTCGGAGCCCTCGTCTTCGTCCGACGAGTAGATCG
TAGATGCCTTAACCTCCGCCTGGCCGGCACCAGAGCCCTTCTTATACCGG
TTCTTGATGGCACTCAGGCTGATGGCGTTCTCATCGTCGCTGCCTTCGTC
GTGCTGGTAAGACGAAGTGCCGCCTCCAATCAGTGGTTCGCCCGCGCCTG
GTTTCTTTTTCTTGGGCAGCGACTTGTGCTGATTGCGCATCGCCTGGCGC
AGCTTGGCCTCCTCCTCCCTGAGCTGCGTTGGCCTATCCGTGGTGGGATC
CTTGCCCACCTGCGTAAGAATCTTAATGCCACTGGTCTTGCTGGATCGAT
CGGCCAGCGACATGGTCATCTTCTTGTGCGTAAAGGACTCCGTGGAATGA
GGACGGAAAGTGAGCTTGGTCCTGAAGACCGACTGGCCCTGCAGACCCGT
TCCTTGGCGGACGAACAGATGATTGTGGTCACCTAACAGCGGCTGCCTGT
AGGCGTCGAAGATCTCGTTGCCCAGGTGAAGGGACATGCTGCCGTCGGAC
CAGCGCACGAATCGCGCATTAGACTCGCGCACCATGTCGCCCTTATTTGT
CATGTACTCTCGCCATCGG

BS01288.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1433-PA 2178 Atu-RA 1326..2178 869..17 4215 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Atu-RA 2351 CG1433-RA 1430..2282 869..17 4235 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5615018..5615870 869..17 4235 99.8 Minus
Blast to na_te.dros performed 2015-02-11 11:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6943 189..39 154 57 Minus

BS01288.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:49 Download gff for BS01288.3prime
Subject Subject Range Query Range Percent Splice Strand
Atu-PA 1326..2178 17..869 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:15 Download gff for BS01288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1433-PA 1326..2178 17..869 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:15:14 Download gff for BS01288.3prime
Subject Subject Range Query Range Percent Splice Strand
Atu-RA 1430..2282 17..869 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:49:23 Download gff for BS01288.3prime
Subject Subject Range Query Range Percent Splice Strand
Atu-RA 1430..2282 17..869 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:49:23 Download gff for BS01288.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5615018..5615870 17..869 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:15:14 Download gff for BS01288.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1440740..1441592 17..869 99   Minus

BS01288.complete Sequence

2210 bp (2210 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ634587

> BS01288.complete
GAAGTTATCAGTCGACATGGGCAGCCAAAACTCGGACGACGACAGTGGTT
CATCCGGTTCGAGTCGAAGTGGAAGCCGCAGTGTCACGCCGCAAGGAGGT
AGTGCGCCCGGATCCCAACGCAGTCGCAGGTCGGGTAGTGGCAGCGATCG
TTCCCGATCGGGCTCCAGGTCTTCCCGATCCCGGTCCGGCTCTGGGTCTC
CGCGTAGTGCCAGGTCCGGGTCTGCAGAAAGCCGCCACTCGCAGCTGTCT
GGCTCCGCTCGTAGTAAGAGATCAAGATCTGCTCACAGTCGCAGGTCGGG
ATCTGCGCGTAGCCGTAAATCTGGAACTCCGGAATCTCCACAAAGTCACA
GATCAGGTTCGTTGCAAAGTCGCAAGTCAGGATCGCCTCAGAGTCGTAGA
TCTGGTTCTCCCCAAAGTCGCAAATCGGGATCTACTCACAGCCGCAGATC
CGGTTCGGCCCACAGTCGCAGATCGGGATCCGCTCGGAGTCGCAAATCTG
GTTCGGCACAAAGTGACCGCTCTGAGTCTCGATCGAGGTCTCATAGCGGT
TCACTCAAGGGCAACGAGGAATCGCGGTCTAATTCGCCCAATCTGCAAAT
TGACGTAGAGCGTGCCAATTCCAAGAGCGGCAGTCGCAGCAGAAGTAGGA
GCAGGAGTGGCAGTCGCACTTCCAGATCGCGTTCCAAGACGGGCACGCCG
TCGCCCAATAGAAGTCGTAGTGGCAGCGCATCCGGCTCCGGCAGCGATGT
GGGTGTGCCCAAGAAGAAGGCACGCAAGGCGAGTGGCTCCGATCAAGAGA
AGAAAAAGAGCGGCAGCGATAGCGACATTGAGGAATCGCCCACCAAAGCT
AAGAAGTCACGGCTGATCGACACTGATAGCGATTCCAATCAGGATGTGGG
AAAGAAAGCTCCGGCTGCAGCTGACATATTTGGAGATGCCGATGATATAA
GTGACGATGAGGATGAGGCTGGACCAGCTGCCAGAAAATCCCCAGTGCGC
TCCAAGAGCCGCAGTCAAAGCAAGTCCCACTCCCACAGTCGTTCTATGAG
CCACTCGCGTTCCCGCTCCAGATCGCGATCCCGGGATAAAGTCGAGAGCC
AAGTAGAATCGGCGCCCAAGGAGGATGAGCCTGAACCGCTTCCGGAGACC
CGAATCGATGTGGAGATTCCGCGCATCTCTGCAGACCTGGGAAAAGAGCA
GCACTTTATCAAGCTTCCCAACTTTTTGTCAGTGGTCACGCATCCGTTTG
ATCCGGAAACCTACGAAGACGAGATCGACGAAGAGGAGACAATGGACGAG
GAGGGCAGACAGCGTATCAAGCTCAAAGTGAGCAACACTATCCGATGGCG
AGAGTACATGAACAATAAGGGCGACATGGTGCGCGAGTCTAATGCGCGAT
TCGTGCGCTGGTCCGACGGCAGCATGTCCCTTCACCTGGGCAACGAGATC
TTCGACGCCTACAGGCAGCCGCTGTTAGGTGACCACAATCATCTGTTCGT
CCGCCAAGGAACGGGTCTGCAGGGCCAGTCGGTCTTCAGGACCAAGCTCA
CTTTCCGTCCTCATTCCACGGAGTCCTTTACGCACAAGAAGATGACCATG
TCGCTGGCCGATCGATCCAGCAAGACCAGTGGCATTAAGATTCTTACGCA
GGTGGGCAAGGATCCCACCACGGATAGGCCAACGCAGCTCAGGGAGGAGG
AGGCCAAGCTGCGCCAGGCGATGCGCAATCAGCACAAGTCGCTGCCCAAG
AAAAAGAAACCAGGCGCGGGCGAACCACTGATTGGAGGCGGCACTTCGTC
TTACCAGCACGACGAAGGCAGCGACGATGAGAACGCCATCAGCCTGAGTG
CCATCAAGAACCGGTATAAGAAGGGCTCTGGTGCCGGCCAGGCGGAGGTT
AAGGCATCTACGATCTACTCGTCGGACGAAGACGAGGGCTCCGACTTCGA
GGCGCGTCGCAGCAAGAAGGTGGACAAGGCCAAGGCCAGCAAGGCACTGC
GCGACTCCGACAGCGAATCGGACGCCGGCAGCGCCAAGAGCGGCCACAGC
AACAAGAGCGGCGGAGAAGGGGGCAGCGCTAGTGGTAGCGAAAACGAGGG
CAGCCAGAAGAGCGGCGGCGGCAGCAGCAAGTCTGCCAGTGGAAGCGGCA
GTGGCAGTGGTTCCGGCAGCGGATCGGGCAGTGACAACGATTAAAAGCTT
TCTAGACCAT

BS01288.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Atu-RA 2178 CG1433-PA 1..2178 17..2194 10890 100 Plus
Atu-RA 2178 CG1433-PA 318..450 382..514 200 76.7 Plus
Atu-RA 2178 CG1433-PA 366..498 334..466 200 76.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Atu-RA 2351 CG1433-RA 105..2282 17..2194 10890 100 Plus
Atu-RA 2351 CG1433-RA 470..602 334..466 200 76.7 Plus
Atu-RA 2351 CG1433-RA 422..554 382..514 200 76.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5614574..5615870 898..2194 6485 100 Plus
3R 32079331 3R 5613687..5614475 111..899 3945 100 Plus
3R 32079331 3R 5613559..5613623 47..111 325 100 Plus
3R 32079331 3R 5613910..5614042 382..514 200 76.7 Plus
3R 32079331 3R 5613958..5614090 334..466 200 76.7 Plus
Blast to na_te.dros performed 2014-11-27 13:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6943 2022..2172 154 57 Plus

BS01288.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:19 Download gff for BS01288.complete
Subject Subject Range Query Range Percent Splice Strand
Atu-RA 1..2178 17..2194 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:27 Download gff for BS01288.complete
Subject Subject Range Query Range Percent Splice Strand
Atu-RA 99..2276 17..2194 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:35:54 Download gff for BS01288.complete
Subject Subject Range Query Range Percent Splice Strand
Atu-RA 105..2280 17..2192 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:19 Download gff for BS01288.complete
Subject Subject Range Query Range Percent Splice Strand
Atu-RA 99..2276 17..2194 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:57 Download gff for BS01288.complete
Subject Subject Range Query Range Percent Splice Strand
Atu-RA 105..2280 17..2192 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:57 Download gff for BS01288.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5613462..5613492 17..47 100 -> Plus
3R 5613560..5613623 48..111 100 -> Plus
3R 5613688..5614474 112..898 100 -> Plus
3R 5614575..5615868 899..2192 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:35:54 Download gff for BS01288.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1439184..1439214 17..47 100 -> Plus
arm_3R 1439282..1439345 48..111 100 -> Plus
arm_3R 1439410..1440196 112..898 100 -> Plus
arm_3R 1440297..1441590 899..2192 100   Plus

BS01288.pep Sequence

Translation from 16 to 2193

> BS01288.pep
MGSQNSDDDSGSSGSSRSGSRSVTPQGGSAPGSQRSRRSGSGSDRSRSGS
RSSRSRSGSGSPRSARSGSAESRHSQLSGSARSKRSRSAHSRRSGSARSR
KSGTPESPQSHRSGSLQSRKSGSPQSRRSGSPQSRKSGSTHSRRSGSAHS
RRSGSARSRKSGSAQSDRSESRSRSHSGSLKGNEESRSNSPNLQIDVERA
NSKSGSRSRSRSRSGSRTSRSRSKTGTPSPNRSRSGSASGSGSDVGVPKK
KARKASGSDQEKKKSGSDSDIEESPTKAKKSRLIDTDSDSNQDVGKKAPA
AADIFGDADDISDDEDEAGPAARKSPVRSKSRSQSKSHSHSRSMSHSRSR
SRSRSRDKVESQVESAPKEDEPEPLPETRIDVEIPRISADLGKEQHFIKL
PNFLSVVTHPFDPETYEDEIDEEETMDEEGRQRIKLKVSNTIRWREYMNN
KGDMVRESNARFVRWSDGSMSLHLGNEIFDAYRQPLLGDHNHLFVRQGTG
LQGQSVFRTKLTFRPHSTESFTHKKMTMSLADRSSKTSGIKILTQVGKDP
TTDRPTQLREEEAKLRQAMRNQHKSLPKKKKPGAGEPLIGGGTSSYQHDE
GSDDENAISLSAIKNRYKKGSGAGQAEVKASTIYSSDEDEGSDFEARRSK
KVDKAKASKALRDSDSESDAGSAKSGHSNKSGGEGGSASGSENEGSQKSG
GGSSKSASGSGSGSGSGSGSGSDND*

BS01288.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Atu-PA 725 CG1433-PA 1..725 1..725 3648 100 Plus
CG9915-PC 820 CG9915-PC 117..554 2..359 400 37.4 Plus
CG9915-PB 820 CG9915-PB 117..554 2..359 400 37.4 Plus
CG9915-PC 820 CG9915-PC 102..580 10..474 384 35.3 Plus
CG9915-PB 820 CG9915-PB 102..580 10..474 384 35.3 Plus
CG10887-PA 676 CG10887-PA 34..675 75..716 383 25 Plus
CG9915-PC 820 CG9915-PC 65..377 4..354 343 39.3 Plus
CG9915-PB 820 CG9915-PB 65..377 4..354 343 39.3 Plus
CG9915-PC 820 CG9915-PC 55..369 16..355 273 37.6 Plus
CG9915-PB 820 CG9915-PB 55..369 16..355 273 37.6 Plus
CG2469-PA 1150 CG2469-PA 898..1149 109..369 259 35.5 Plus
CG9915-PC 820 CG9915-PC 61..319 102..356 202 30.6 Plus
CG9915-PB 820 CG9915-PB 61..319 102..356 202 30.6 Plus
CG9915-PC 820 CG9915-PC 49..268 105..356 168 33.9 Plus
CG9915-PB 820 CG9915-PB 49..268 105..356 168 33.9 Plus