Clone BS01293 Report

Search the DGRC for BS01293

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:12
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG5204-RA
Protein status:BS01293.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01293.5prime Sequence

849 bp (710 high quality bases) assembled on 2005-11-29

> BS01293.5prime
GAAGTTATCAGTCGACATGGAGCTGCCTTCAATGGTGGAGCGTTCGGGTG
ATCGCTTGGTGGTGCGCAGCTTGGTTAGTGGTGCTCCACTTTATCAGTCA
TCTATTGAGGGCGGAGCAGGTGCTGTGCTTCCTATGTCCCAAAGCGTGCA
GCCGCTAATAGGTCAGGACTTTTTGGAGCAACAACTGGAGCAGTATAAGG
CGAATAACTTTATGTTTCCACTATCGATGGCCGGGTTTGTTTCCGCAGAC
TCTGCACCACCGGGGGACTTGGCCAAGGAAAATATGGAGAACTCACTGCC
AGATGGTAATCCGTGCAACAACAACAACGACGATGAGCTGCCGCAGTGCA
AGATACGGCGTAACTACAGCTGCAACCAGTGCGCATTCTTCACGCAAAAT
CCGCGCAGTCATCTCTCGCATCTGCGGGACGTACATGGCGAGCGGATTGT
GATCAACGAGTGCAAGTTGTGCCTCTATGCCTCACGCCACTTCCAGAAGC
TGGTGCGGCACATGAAAATGGTGCACGGCTGTTCCGATGATGGCGGCGCA
GTGCAGGGATCAGGTGCTCAGCCGCGTGGTAAGCGAAATCTCTCCAGGGA
GGTGCGCAAGCGTCGTCTGGAGGAGAGCATTGAAGGCCAGGGTGCGACTG
GGCAATGCCTAGACCTCAGCGTGCTGCGCATGATCCAAAATGGACCGCCA
CTGGAGCAGCTGAAAGTAGAACTGCAGCAGCAAGAGATGCAGCTACTGGC
CAGTGTCCAGGCGTACAATCGACAGCANGAGATGCTGCAGCTGCAGCAGA
TCGTCGAGAGCCACGACAACATATTCTCCATGGCCTACGAGTTCCAGAC

BS01293.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5204-PA 2244 CG5204-RA 1..833 17..849 4146 99.8 Plus
CG9932-PA 6516 CG9932-RA 478..518 491..531 205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5204-RA 2364 CG5204-RA 73..906 16..849 4159 99.9 Plus
CG9932-RE 8986 CG9932-RE 1352..1545 338..531 445 82 Plus
CG9932-RD 7646 CG9932-RD 1352..1545 338..531 445 82 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13160805..13161638 16..849 4159 99.9 Plus
2L 23513712 2L 13030816..13031009 531..338 445 82 Minus
Blast to na_te.dros performed on 2015-02-11 11:46:46 has no hits.

BS01293.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:55 Download gff for BS01293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5204-PA 1..833 17..849 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:25 Download gff for BS01293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5204-PA 1..833 17..849 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:20:13 Download gff for BS01293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 70..906 10..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:03:21 Download gff for BS01293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 70..906 10..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:03:21 Download gff for BS01293.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13160802..13161638 10..849 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:20:13 Download gff for BS01293.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13160802..13161638 10..849 99   Plus

BS01293.3prime Sequence

830 bp (748 high quality bases) assembled on 2005-11-29

> BS01293.3prime
ATGGTCTAGAAAGCTTTTAATCGCTTTCATTGGATTCATCAGCGGATGTC
GTTTCGTCTGATTGACCACCATCTGTCTTGGTCAAATTCATAGGCGACCC
TTTGGGCTTTGGCATGACTTGTGATGAATTCAATGATTTAAATGACAAGG
GTTCTAAATTTGGCTCCGTCTTGGCTCCCTCTTGCGGCAGCTCATCGCTG
TTGCCTGCCAAGTCCTCCGTCTGGTCATCCCTGGGCTTTCGTAAATCCAG
TGCCGAGGTCGAATGAGCACTATCCACCATCTCGATGATCTCCTCCGTTT
CCATGGGATGATGGTCGTCTAGCTTCTCCGGCGGCATCACAATCATTTCA
CCCGTGCGCATTCCCTTCGAATCGGCCAATTGTTCGGCGCTTACCTTCAT
CATAGTCAGATACTGATTGTACTTGGCGTAGTTGCGCCTACCGGTCTCAT
CGTTCATCAGCACCTGGGCCTGGTTATGGGATCTATCGCGGAGGGCCTTC
AAACGGATGTGCTTGGTGATGTCCCAGCGCCAGTTGGAGCGATAGGCGCA
CAGAGAGCATTCAAAGGGCTTCCTATTTAGATGACCAACGATGTGGACAT
GGAAGCGAGATGCAGTGGCTGCCCAAAAACTGCAATGAGGACACTTAAAA
ACCTTCTTCAATGGCGCCAAATCTTCGGGTTCCTCTGGCAAAACTTCTGT
GACCTCCCCATAGCCAGGAGCTGTTTCTACGCCGCAATAACTGAGATCAG
TGGGAGCATTGGGGAAGTCCTCATCGTGAAGATCCACCTCCGCGTTGATA
GAAGCCTGCAGTTGGGTGGTGTTTGTGCAG

BS01293.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5204-PA 2244 CG5204-RA 1438..2244 823..17 4035 100 Minus
CG9932-PA 6516 CG9932-RA 2548..2592 541..497 200 97.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5204-RA 2364 CG5204-RA 1506..2319 829..15 4050 99.9 Minus
CG9932-RE 8986 CG9932-RE 3444..3713 660..391 585 81.1 Minus
CG9932-RD 7646 CG9932-RD 3444..3713 660..391 585 81.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13162418..13163108 705..15 3455 100 Minus
2L 23513712 2L 13162243..13162364 823..702 610 100 Minus
2L 23513712 2L 13028236..13028505 391..660 585 81.1 Plus
Blast to na_te.dros performed on 2015-02-12 19:17:21 has no hits.

BS01293.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:55 Download gff for BS01293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5204-PA 1431..2244 17..830 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:23 Download gff for BS01293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5204-PA 1431..2244 17..830 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:17:06 Download gff for BS01293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 1504..2326 8..830 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:58:43 Download gff for BS01293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 1504..2326 8..830 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:58:43 Download gff for BS01293.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13162236..13162362 704..830 98 -> Minus
2L 13162420..13163115 8..703 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:17:06 Download gff for BS01293.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13162236..13162362 704..830 98 -> Minus
arm_2L 13162420..13163115 8..703 99   Minus

BS01293.complete Sequence

2276 bp (2276 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ634589

> BS01293.complete
GAAGTTATCAGTCGACATGGAGCTGCCTTCAATGGTGGAGCGTTCGGGTG
ATCGCTTGGTGGTGCGCAGCTTGGTTAGTGGTGCTCCACTTTATCAGTCA
TCTATTGAGGGCGGAGCAGGTGCTGTGCTTCCTATGTCCCAAAGCGTGCA
GCCGCTAATAGGTCAGGACTTTTTGGAGCAACAACTGGAGCAGTATAAGG
CGAATAACTTTATGTTTCCACTATCGATGGCCGGGTTTGTTTCCGCAGAC
TCTGCACCACCGGGGGACTTGGCCAAGGAAAATATGGAGAACTCACTGCC
AGATGGTAATCCGTGCAACAACAACAACGACGATGAGCTGCCGCAGTGCA
AGATACGGCGTAACTACAGCTGCAACCAGTGCGCATTCTTCACGCAAAAT
CCGCGCAGTCATCTCTCGCATCTGCGGGACGTACATGGCGAGCGGATTGT
GATCAACGAGTGCAAGTTGTGCCTCTATGCCTCACGCCACTTCCAGAAGC
TGGTGCGGCACATGAAAATGGTGCACGGCTGTTCCGATGATGGCGGCGCA
GTGCAGGGATCAGGTGCTCAGCCGCGTGGTAAGCGAAATCTCTCCAGGGA
GGTGCGCAAGCGTCGTCTGGAGGAGAGCATTGAAGGCCAGGGTGCGACTG
GGCAATGCCTAGACCTCAGCGTGCTGCGCATGATCCAAAATGGACCGCCA
CTGGAGCAGCTGAAAGTAGAACTGCAGCAGCAAGAGATGCAGCTACTGGC
CAGTGTCCAGGCGTACAATCGACAGCAGGAGATGCTGCAGCTGCAGCAGA
TCGTCGAGAGCCACGACAACATATTCTCCATGGCCTACGAGTTCCAGACC
AAGTTAATGCCGCCTAAGCAAGCAGAGTCCCTGAAATTGGAACAGCAAAA
CAGCAGCTCCGATTCCGAGGAGACTGCGAAGAGTCCTTCGCCGGATACCC
GTGAATTGGTGTCGGGTAAGGAGCAGTTTCAATGCCAGAAGTGTTCATAT
AGCACGCCCATTCGAGCCAGATTCAAAAAGCATGTGAAGTACCATTCCAT
GCCACTGATCAAGTGCAGCTCATGTGATTTTCACACACCCTACAAGTGGA
ATCTAGACCGGCACACCAAGAACCATGGTGCCAATGGCCATTTCAAGTGC
TCGTGCTGTGACTTTAGCACGGATATCAAACAATCGCTGACCATACACGA
ATCAAACCATCATGTGCCCATGCCGGTTCACCAAATGGGCAACCGAAGCC
GAGATGAGGCTGAGGATCTGGTGGATCAGCAGTCAAGTGGTTCCAGGAAA
CCAGAAACGTTTAAAAATGGTGGTGCTACCGTTGCATCGACAGAATCTCT
GCTTCCCCGGACTTCGGGGATCGTTTGTTCACACTGCCAGAAGCGGGTGG
GCAATGCCATGCAGTTGATCAACCATCTACAAGTGTGCACTTTGGCCTTG
CACAACACCACCCAACTGCAGGCTTCTATCAACGCGGAGGTGGATCTTCA
CGATGAGGACTTCCCCAATGCTCCCACTGATCTCAGTTATTGCGGCGTAG
AAACAGCTCCTGGCTATGGGGAGGTCACAGAAGTTTTGCCAGAGGAACCC
GAAGATTTGGCGCCATTGAAGAAGGTTTTTAAGTGTCCTCATTGCAGTTT
TTGGGCAGCCACTGCATCTCGCTTCCATGTCCACATCGTTGGTCATCTAA
ATAGGAAGCCCTTTGAATGCTCTCTGTGCGCCTATCGCTCCAACTGGCGC
TGGGACATCACCAAGCACATCCGTTTGAAGGCCCTCCGCGATAGATCCCA
TAACCAGGCCCAGGTGCTGATGAACGATGAGACCGGTAGGCGCAACTACG
CCAAGTACAATCAGTATCTGACTATGATGAAGGTAAGCGCCGAACAATTG
GCCGATTCGAAGGGAATGCGCACGGGTGAAATGATTGTGATGCCGCCGGA
GAAGCTAGACGACCATCATCCCATGGAAACGGAGGAGATCATCGAGATGG
TGGATAGTGCTCATTCGACCTCGGCACTGGATTTACGAAAGCCCAGGGAT
GACCAGACGGAGGACTTGGCAGGCAACAGCGATGAGCTGCCGCAAGAGGG
AGCCAAGACGGAGCCAAATTTAGAACCCTTGTCATTTAAATCATTGAATT
CATCACAAGTCATGCCAAAGCCCAAAGGGTCGCCTATGAATTTGACCAAG
ACAGATGGTGGTCAATCAGACGAAACGACATCCGCTGATGAATCCAATGA
AAGCGATTAAAAGCTTTCTAGACCAT

BS01293.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5204-RA 2244 CG5204-PA 1..2244 17..2260 11220 100 Plus
CG9932-RE 6504 CG9932-PE 2417..2686 1617..1886 585 81.1 Plus
CG9932-RD 5967 CG9932-PD 2417..2686 1617..1886 585 81.1 Plus
CG9932-RE 6504 CG9932-PE 325..518 338..531 445 82 Plus
CG9932-RE 6504 CG9932-PE 1060..1250 1028..1218 235 74.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5204-RA 2364 CG5204-RA 73..2319 16..2262 11235 100 Plus
CG9932-RE 8986 CG9932-RE 3444..3713 1617..1886 585 81.1 Plus
CG9932-RD 7646 CG9932-RD 3444..3713 1617..1886 585 81.1 Plus
CG9932-RE 8986 CG9932-RE 1352..1545 338..531 445 82 Plus
CG9932-RE 8986 CG9932-RE 2087..2277 1028..1218 235 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13160805..13162364 16..1575 7800 100 Plus
2L 23513712 2L 13162418..13163108 1572..2262 3455 100 Plus
2L 23513712 2L 13028236..13028505 1886..1617 585 81.1 Minus
2L 23513712 2L 13030816..13031009 531..338 445 82 Minus
2L 23513712 2L 13030084..13030274 1218..1028 235 74.9 Minus
Blast to na_te.dros performed on 2014-11-27 15:00:25 has no hits.

BS01293.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:53 Download gff for BS01293.complete
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 1..2244 17..2260 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:35 Download gff for BS01293.complete
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 70..2326 10..2269 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:55 Download gff for BS01293.complete
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 74..2315 17..2258 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:53 Download gff for BS01293.complete
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 70..2326 10..2269 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:49 Download gff for BS01293.complete
Subject Subject Range Query Range Percent Splice Strand
CG5204-RA 74..2315 17..2258 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:49 Download gff for BS01293.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13160806..13162362 17..1573 100 -> Plus
2L 13162420..13163104 1574..2258 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:55 Download gff for BS01293.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13160806..13162362 17..1573 100 -> Plus
arm_2L 13162420..13163104 1574..2258 100   Plus

BS01293.pep Sequence

Translation from 16 to 2259

> BS01293.pep
MELPSMVERSGDRLVVRSLVSGAPLYQSSIEGGAGAVLPMSQSVQPLIGQ
DFLEQQLEQYKANNFMFPLSMAGFVSADSAPPGDLAKENMENSLPDGNPC
NNNNDDELPQCKIRRNYSCNQCAFFTQNPRSHLSHLRDVHGERIVINECK
LCLYASRHFQKLVRHMKMVHGCSDDGGAVQGSGAQPRGKRNLSREVRKRR
LEESIEGQGATGQCLDLSVLRMIQNGPPLEQLKVELQQQEMQLLASVQAY
NRQQEMLQLQQIVESHDNIFSMAYEFQTKLMPPKQAESLKLEQQNSSSDS
EETAKSPSPDTRELVSGKEQFQCQKCSYSTPIRARFKKHVKYHSMPLIKC
SSCDFHTPYKWNLDRHTKNHGANGHFKCSCCDFSTDIKQSLTIHESNHHV
PMPVHQMGNRSRDEAEDLVDQQSSGSRKPETFKNGGATVASTESLLPRTS
GIVCSHCQKRVGNAMQLINHLQVCTLALHNTTQLQASINAEVDLHDEDFP
NAPTDLSYCGVETAPGYGEVTEVLPEEPEDLAPLKKVFKCPHCSFWAATA
SRFHVHIVGHLNRKPFECSLCAYRSNWRWDITKHIRLKALRDRSHNQAQV
LMNDETGRRNYAKYNQYLTMMKVSAEQLADSKGMRTGEMIVMPPEKLDDH
HPMETEEIIEMVDSAHSTSALDLRKPRDDQTEDLAGNSDELPQEGAKTEP
NLEPLSFKSLNSSQVMPKPKGSPMNLTKTDGGQSDETTSADESNESD*

BS01293.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5204-PA 747 CG5204-PA 1..747 1..747 3961 100 Plus
CG9932-PC 1899 CG9932-PC 1..424 1..409 907 47 Plus
CG9932-PD 1988 CG9932-PD 1..424 1..409 907 47 Plus
CG9932-PE 2167 CG9932-PE 1..424 1..409 907 47 Plus
CG9932-PA 2171 CG9932-PA 1..424 1..409 907 47 Plus
CG9932-PC 1899 CG9932-PC 675..914 449..639 553 48.1 Plus
CG9932-PD 1988 CG9932-PD 675..910 449..639 547 47.9 Plus
CG9932-PE 2167 CG9932-PE 675..910 449..639 547 47.9 Plus