Clone BS01296 Report

Search the DGRC for BS01296

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:12
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptE(z)-RA
Protein status:BS01296.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01296.3prime Sequence

865 bp (806 high quality bases) assembled on 2005-11-29

> BS01296.3prime
ATGGTCTAGAAAGCTTTCAAACAATTTCCATTTCACGCTCTATGCCCACG
AACTTCAGCTGCTCCGTGGGTCCGTATCTGTAGTCAAAGAATAGCTCTTC
GCCGGGCTGAATGGCCCGCTTGGCAAAGATGCCGATGCGATGATCGCCGG
TGACCATCATAACCTTGGCATAGCAATTGGGATTAATGGAATGATTGGCA
AACCGAATCTTGTTGCCCTTCCGAGTGGCATCCACAACAAAATCGTTGTT
CAGATTGAAAAGAAATGAGCACATGTACTTGTCGTAAACCTTGCCACGGC
GATCGGCTTCATCTTGGGATATGATCTCGCCACAATATTCCGAAATGAAC
TCATTCTTTTGCGCACCCTCCTTAAGAAAGATGCCCCAGCCGGCGATGTC
AGACGGAGCCATGAGCAGGTGCTTGTGCAGTCCTCGCTGCACGCACACGT
TCTTGCACGTGATCTTGGTCAGCTTAAACTGATCCGCTCCGCAGGCCTGG
CACAGATCGGGATCACACTCGCGCACTGCCAGATAGCAAGGACACTGCTT
CGTATTGCACTGAGCCTTGCAGCGACAGCCGGGGAAACGATTCTGGCAAT
CGCTGCTGCAGTTGCAGAACTTTTCGCAGAAGTTTTGTGTCTGAATGCAG
GAGCAGTTCATGTCGCATGGATGTCCGGGATGGTCGCAGGGCGTGTAGTT
GTACACGTGATTCGAGGATGAGTCCTTCTTTAGCTGAATCTTACGACAGT
GCAGCGACCACAGACGTTGCTTCTTCTTCTTCTTGCGCGGAGGTGTGAAG
TCCTGTCGCAAATCCTCGAAGCTAAACTCAGCATCCTCCTTCTGGGGCAA
CTCGTACACCTGACG

BS01296.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6502-PA 2283 E(z)-RA 1435..2283 865..17 4195 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
E(z)-RC 2479 CG6502-RC 1568..2416 865..17 4215 99.8 Minus
E(z)-RB 2464 CG6502-RB 1553..2401 865..17 4215 99.8 Minus
E(z)-RA 2650 CG6502-RA 1739..2587 865..17 4215 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10635116..10635554 427..865 2165 99.5 Plus
3L 28110227 3L 10634638..10635047 17..426 2050 100 Plus
Blast to na_te.dros performed on 2015-02-06 15:58:00 has no hits.

BS01296.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:05:58 Download gff for BS01296.3prime
Subject Subject Range Query Range Percent Splice Strand
E(z)-PA 1435..2283 17..865 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:29 Download gff for BS01296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6502-PA 1435..2283 17..865 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:18:40 Download gff for BS01296.3prime
Subject Subject Range Query Range Percent Splice Strand
E(z)-RA 1739..2587 17..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:05:06 Download gff for BS01296.3prime
Subject Subject Range Query Range Percent Splice Strand
E(z)-RA 1739..2587 17..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:05:06 Download gff for BS01296.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10634638..10635047 17..426 100 <- Plus
3L 10635116..10635554 427..865 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:18:40 Download gff for BS01296.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10627738..10628147 17..426 100 <- Plus
arm_3L 10628216..10628654 427..865 99   Plus

BS01296.5prime Sequence

891 bp (789 high quality bases) assembled on 2005-11-29

> BS01296.5prime
GAAGTTATCAGTCGACATGAATAGCACTAAAGTGCCGCCCGAGTGGAAGA
GGCGTGTCAAGTCGGAGTACATCAAAATCAGGCAGCAGAAGCGCTACAAA
CGTGCCGACGAGATCAAGGAGGCGTGGATAAGAAACTGGGACGAGCACAA
CCACAATGTACAGGATCTGTACTGCGAGTCGAAGGTTTGGCAGGCTAAAC
CCTACGATCCGCCGCATGTGGACTGTGTGAAGCGGGCGGAGGTGACTAGC
TACAATGGCATTCCCAGCGGTCCGCAAAAGGTGCCCATTTGCGTGATCAA
CGCGGTCACTCCCATACCCACCATGTACACGTGGGCACCAACACAGCAGA
ACTTCATGGTGGAGGATGAGACGGTGCTGCACAATATACCCTATATGGGC
GACGAGGTCCTCGATAAGGATGGCAAGTTCATAGAGGAACTGATCAAAAA
CTACGATGGCAAGGTTCACGGCGACAAGGATCCCTCGTTCATGGACGATG
CCATCTTCGTAGAACTGGTGCACGCCCTTATGCGCTCCTACAGCAAGGAA
CTGGAGGAAGCCGCTCCGGGTACAGCGACTGCCATTAAAACAGAGACGTT
GGCGAAATCAAAACAGGGCGAAGATGATGGGGTAGTTGATGTTGACGCAG
ATGGTGAATCTCCCATGAAGCTTGAGAAAACCGACAGCAAAGGGGATCTG
ACTGAAGTTGAGAAGAAGGAAACTGAAGAACCGCTGGAGACTGAAGATGC
GGATGTTAAGCCCGATGTGGAAGAAGTCAAGGACAAGCTGCCCTTCCCTG
CGCCCATTATTTTTCAGGCCATCAGCGCTAACTTTCCAGACAAGGGCACC
GCGCNAGAGCTCAAAGAAAAGTACATTGAGCTTACGGAGCA

BS01296.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6502-PA 2283 E(z)-RA 1..875 17..891 4356 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
E(z)-RC 2479 CG6502-RC 119..993 17..891 4364 99.9 Plus
E(z)-RB 2464 CG6502-RB 119..993 17..891 4364 99.9 Plus
E(z)-RA 2650 CG6502-RA 305..1179 17..891 4364 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10636843..10637578 873..138 3669 99.9 Minus
3L 28110227 3L 10637639..10637761 139..17 615 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:44:25 has no hits.

BS01296.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:00 Download gff for BS01296.5prime
Subject Subject Range Query Range Percent Splice Strand
E(z)-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:30 Download gff for BS01296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6502-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:52:41 Download gff for BS01296.5prime
Subject Subject Range Query Range Percent Splice Strand
E(z)-RA 298..1178 10..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:13:06 Download gff for BS01296.5prime
Subject Subject Range Query Range Percent Splice Strand
E(z)-RA 298..1178 10..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:13:06 Download gff for BS01296.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10636765..10636784 871..890 100 <- Minus
3L 10636846..10637577 139..870 99 <- Minus
3L 10637640..10637768 10..138 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:52:41 Download gff for BS01296.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10629865..10629884 871..890 100 <- Minus
arm_3L 10629946..10630677 139..870 99 <- Minus
arm_3L 10630740..10630868 10..138 96   Minus

BS01296.complete Sequence

2315 bp (2315 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634590

> BS01296.complete
GAAGTTATCAGTCGACATGAATAGCACTAAAGTGCCGCCCGAGTGGAAGA
GGCGTGTCAAGTCGGAGTACATCAAAATCAGGCAGCAGAAGCGCTACAAA
CGTGCCGACGAGATCAAGGAGGCGTGGATAAGAAACTGGGACGAGCACAA
CCACAATGTACAGGATCTGTACTGCGAGTCGAAGGTTTGGCAGGCTAAAC
CCTACGATCCGCCGCATGTGGACTGTGTGAAGCGGGCGGAGGTGACTAGC
TACAATGGCATTCCCAGCGGTCCGCAAAAGGTGCCCATTTGCGTGATCAA
CGCGGTCACTCCCATACCCACCATGTACACGTGGGCACCAACACAGCAGA
ACTTCATGGTGGAGGATGAGACGGTGCTGCACAATATACCCTATATGGGC
GACGAGGTCCTCGATAAGGATGGCAAGTTCATAGAGGAACTGATCAAAAA
CTACGATGGCAAGGTTCACGGCGACAAGGATCCCTCGTTCATGGACGATG
CCATCTTCGTAGAACTGGTGCACGCCCTTATGCGCTCCTACAGCAAGGAA
CTGGAGGAAGCCGCTCCGGGTACAGCGACTGCCATTAAAACAGAGACGTT
GGCGAAATCAAAACAGGGCGAAGATGATGGGGTAGTTGATGTTGACGCAG
ATGGTGAATCTCCCATGAAGCTTGAGAAAACCGACAGCAAAGGGGATCTG
ACTGAAGTTGAGAAGAAGGAAACTGAAGAACCGCTGGAGACTGAAGATGC
GGATGTTAAGCCCGATGTGGAAGAAGTCAAGGACAAGCTGCCCTTCCCTG
CGCCCATTATTTTTCAGGCCATCAGCGCTAACTTTCCAGACAAGGGCACC
GCGCAAGAGCTCAAAGAAAAGTACATTGAGCTTACGGAGCACCAGGATCC
GGAGCGCCCACAGGAGTGCACACCCAACATTGACGGCATCAAGGCCGAGA
GCGTTTCCCGGGAAAGGACTATGCACTCCTTTCACACGCTCTTCTGTCGT
CGTTGCTTCAAATACGACTGCTTCCTGCACCGCTTGCAAGGACATGCGGG
TCCCAATCTCCAGAAGCGTCGCTATCCGGAACTGAAGCCTTTCGCCGAAC
CTTGCAGCAACTCCTGCTACATGTTGATCGATGGCATGAAGGAAAAGCTG
GCGGCCGATAGCAAGACACCTCCCATTGATTCCTGCAATGAGGCCAGCTC
CGAGGACAGTAATGACAGCAACAGTCAGTTTAGCAACAAGGACTTTAATC
ATGAGAATAGCAAGGATAATGGCCTGACTGTAAATAGCGCCGCTGTGGCT
GAGATCAACTCCATTATGGCTGGCATGATGAACATCACCAGTACGCAGTG
CGTTTGGACAGGCGCTGACCAAGCACTTTATCGGGTCTTGCATAAAGTGT
ATTTAAAGAACTACTGCGCGATTGCGCACAACATGCTGACCAAGACCTGT
CGTCAGGTGTACGAGTTTGCCCAGAAGGAGGATGCTGAGTTTAGCTTCGA
GGATTTGCGACAGGACTTCACACCTCCGCGCAAGAAGAAGAAGAAGCAAC
GTCTGTGGTCGCTGCACTGTCGTAAGATTCAGCTAAAGAAGGACTCATCC
TCGAATCACGTGTACAACTACACGCCCTGCGACCATCCCGGACATCCATG
CGACATGAACTGCTCCTGCATTCAGACACAAAACTTCTGCGAAAAGTTCT
GCAACTGCAGCAGCGATTGCCAGAATCGTTTCCCCGGCTGTCGCTGCAAG
GCTCAGTGCAATACGAAGCAGTGTCCTTGCTATCTGGCAGTGCGCGAGTG
TGATCCCGATCTGTGCCAGGCCTGCGGAGCGGATCAGTTTAAGCTGACCA
AGATCACGTGCAAGAACGTGTGCGTGCAGCGAGGACTGCACAAGCACCTG
CTCATGGCTCCGTCTGACATCGCCGGCTGGGGCATCTTTCTTAAGGAGGG
TGCGCAAAAGAATGAGTTCATTTCGGAATATTGTGGCGAGATCATATCCC
AAGATGAAGCCGATCGCCGTGGCAAGGTTTACGACAAGTACATGTGCTCA
TTTCTTTTCAATCTGAACAACGATTTTGTTGTGGATGCCACTCGGAAGGG
CAACAAGATTCGGTTTGCCAATCATTCCATTAATCCCAATTGCTATGCCA
AGGTTATGATGGTCACCGGCGATCATCGCATCGGCATCTTTGCCAAGCGG
GCCATTCAGCCCGGCGAAGAGCTATTCTTTGACTACAGATACGGACCCAC
GGAGCAGCTGAAGTTCGTGGGCATAGAGCGTGAAATGGAAATTGTTTGAA
AGCTTTCTAGACCAT

BS01296.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
E(z)-RB 2283 CG6502-PB 1..2283 17..2299 11415 100 Plus
E(z)-RA 2283 CG6502-PA 1..2283 17..2299 11415 100 Plus
E(z)-RC 2298 CG6502-PC 1..2298 17..2299 11230 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
E(z)-RB 2464 CG6502-RB 119..2401 17..2299 11415 100 Plus
E(z)-RA 2650 CG6502-RA 305..2587 17..2299 11415 100 Plus
E(z)-RC 2479 CG6502-RC 119..2416 17..2299 11230 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10636843..10637578 873..138 3680 100 Minus
3L 28110227 3L 10635116..10635686 1889..1319 2855 100 Minus
3L 28110227 3L 10634638..10635047 2299..1890 2050 100 Minus
3L 28110227 3L 10635748..10635937 1319..1130 950 100 Minus
3L 28110227 3L 10636623..10636784 1032..871 810 100 Minus
3L 28110227 3L 10637639..10637761 139..17 615 100 Minus
3L 28110227 3L 10635995..10636093 1130..1032 495 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:46:56 has no hits.

BS01296.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:20 Download gff for BS01296.complete
Subject Subject Range Query Range Percent Splice Strand
E(z)-RB 1..2283 17..2299 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:19 Download gff for BS01296.complete
Subject Subject Range Query Range Percent Splice Strand
E(z)-RB 111..2400 10..2299 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:00 Download gff for BS01296.complete
Subject Subject Range Query Range Percent Splice Strand
E(z)-RA 305..2586 17..2298 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:20 Download gff for BS01296.complete
Subject Subject Range Query Range Percent Splice Strand
E(z)-RB 111..2400 10..2299 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:11 Download gff for BS01296.complete
Subject Subject Range Query Range Percent Splice Strand
E(z)-RA 305..2586 17..2298 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:11 Download gff for BS01296.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10634639..10635047 1890..2298 100 <- Minus
3L 10635116..10635685 1320..1889 100 <- Minus
3L 10635748..10635937 1130..1319 100 <- Minus
3L 10635996..10636093 1032..1129 100 <- Minus
3L 10636624..10636784 871..1031 100 <- Minus
3L 10636846..10637577 139..870 100 <- Minus
3L 10637640..10637761 17..138 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:00 Download gff for BS01296.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10627739..10628147 1890..2298 100 <- Minus
arm_3L 10628216..10628785 1320..1889 100 <- Minus
arm_3L 10628848..10629037 1130..1319 100 <- Minus
arm_3L 10629096..10629193 1032..1129 100 <- Minus
arm_3L 10629724..10629884 871..1031 100 <- Minus
arm_3L 10629946..10630677 139..870 100 <- Minus
arm_3L 10630740..10630861 17..138 100   Minus

BS01296.pep Sequence

Translation from 16 to 2298

> BS01296.pep
MNSTKVPPEWKRRVKSEYIKIRQQKRYKRADEIKEAWIRNWDEHNHNVQD
LYCESKVWQAKPYDPPHVDCVKRAEVTSYNGIPSGPQKVPICVINAVTPI
PTMYTWAPTQQNFMVEDETVLHNIPYMGDEVLDKDGKFIEELIKNYDGKV
HGDKDPSFMDDAIFVELVHALMRSYSKELEEAAPGTATAIKTETLAKSKQ
GEDDGVVDVDADGESPMKLEKTDSKGDLTEVEKKETEEPLETEDADVKPD
VEEVKDKLPFPAPIIFQAISANFPDKGTAQELKEKYIELTEHQDPERPQE
CTPNIDGIKAESVSRERTMHSFHTLFCRRCFKYDCFLHRLQGHAGPNLQK
RRYPELKPFAEPCSNSCYMLIDGMKEKLAADSKTPPIDSCNEASSEDSND
SNSQFSNKDFNHENSKDNGLTVNSAAVAEINSIMAGMMNITSTQCVWTGA
DQALYRVLHKVYLKNYCAIAHNMLTKTCRQVYEFAQKEDAEFSFEDLRQD
FTPPRKKKKKQRLWSLHCRKIQLKKDSSSNHVYNYTPCDHPGHPCDMNCS
CIQTQNFCEKFCNCSSDCQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLC
QACGADQFKLTKITCKNVCVQRGLHKHLLMAPSDIAGWGIFLKEGAQKNE
FISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRF
ANHSINPNCYAKVMMVTGDHRIGIFAKRAIQPGEELFFDYRYGPTEQLKF
VGIEREMEIV*

BS01296.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
E(z)-PB 760 CG6502-PB 1..760 1..760 4140 100 Plus
E(z)-PA 760 CG6502-PA 1..760 1..760 4140 100 Plus
E(z)-PC 765 CG6502-PC 1..765 1..760 4124 99.3 Plus
Su(var)3-9-PA 635 CG43664-PA 410..621 547..759 235 30 Plus
Set1-PI 1641 CG40351-PI 1502..1626 626..749 230 39.7 Plus