Clone Sequence Records
BS01304.3prime Sequence
868 bp (815 high quality bases) assembled on 2005-11-29
> BS01304.3prime
ATGGTCTAGAAAGCTTTTACTCCATTCGCCGGGCCTCGGCTTGCATGGTC
TGCAGTACGATGTGTGGCACCAGGTGTGTGGAGGCGTAGTTCAGGGGCAC
CGTGGCCAATGGCGCTGAGCCGTCAGATGGGAAGTTGAGCTCCTGTGCCA
TGGGCATGTCCCTGTCGATGACATCCTGGGCGATCAAGGTCTTGGTCTCC
TCGTACTCCATGCCCGCCTCCGGCTTAGCGCCCATCAAGAGTTTTCCGCG
CTGCACGCCCATGTACTGGGTGGCCTTGGCATTCAAAGGCAACTGGCCGC
AGGTATCGGCATGCACCTTGCGATGTGCCTGCAAGTTGGAGATGCAAGTG
AAGCGCTTGCCGCAGTTATTGCACAGGAAACGCTTAATGCCCGTGTGCAC
GGTCATGTGGGTGAGCAGACTCTCCCTGTACGGATACTCCTTGGGACACA
GGTGGCACTTGTACGGCTTGTAGTCCGTGTGGCGCGTCTTCAAGTGCGAC
TTGTATTGCGCCTTCACCTTGAATGTTTTGCCGCACTTATCGCACTGGTA
CGGAGTGTCTGCCTTGTGAAGGAGCATGTGCGTCTTGAGAATACCAGCGG
TGGACAAATGTTTGCCGCAAACGCTGCAGCCGTAGAGCGGTAGACGGCCG
CAGTCAGAACGAACGTGGTCAGAGAGCGATGTGCGTCCGGTGAACTTCTT
GCCGCACTTGTCGCAGATGAGGTTGCGCTGCTGGCTGCGCGGCTCCTTCT
TCGAGTGGAAATTGCGTTCGTGGTTCTTGAGGCTGTCGTGTCCGGTCATG
TACTTGTCGCATTTTTCGCAGTAGAGCAGTTCCTTGTGCTGGGCCCTAGC
ATGCTCAGTGGCCTGTTC
BS01304.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3998-PA | 2334 | zf30C-RA | 1483..2334 | 868..17 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:54:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zf30C-RA | 2976 | CG3998-RA | 1891..2742 | 868..17 | 4260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9761564..9762141 | 594..17 | 2890 | 100 | Minus |
| 2L | 23513712 | 2L | 9761225..9761499 | 868..594 | 1375 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:54:35 has no hits.
BS01304.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:05 Download gff for
BS01304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-PA | 1483..2334 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:36 Download gff for
BS01304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3998-PA | 1483..2334 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:30:48 Download gff for
BS01304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 1891..2745 | 11..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:55:44 Download gff for
BS01304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 1891..2745 | 11..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:55:44 Download gff for
BS01304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9761225..9761499 | 594..868 | 100 | -> | Minus |
| 2L | 9761565..9762144 | 11..593 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:30:48 Download gff for
BS01304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9761225..9761499 | 594..868 | 100 | -> | Minus |
| arm_2L | 9761565..9762144 | 11..593 | 99 | | Minus |
BS01304.5prime Sequence
851 bp (785 high quality bases) assembled on 2005-11-29
> BS01304.5prime
GAAGTTATCAGTCGACATGGAAACCGAGTCGATGGCTCCAAGCAGCAGTG
CGGCGGCTGCAGCCACCAAGCTCCTGGTGGAGATCACCACCGACGGAATA
CCCAAGCTGCACTGCCCGGTGTGCAACAAGGCGCTGGTCTCCCTAGCCGG
ATATGTGAAGCACGTAAAGAAGCACCAGCCGCCGGGCGGCTTCGAGTGCC
GTCACTGCGATGCTCGGTTTTGCCACGAGGAGGAGCTCACCCAGCATGCA
AAGGATGAGCACGGAGTCACTGGCGCGGTAGCTGGACAGGAGCGAAAGCC
TTTCGTTTGTGAAAAGTGCGGCGCGGAGTACAAGTACCAGGAGGCATACC
GTCGCCACTGCAGGACCAAGTGTGGCGAGGAAAAGCTACCCAGGGAGGAA
TCCCGACCAATGGAGTGCAAGTGCTGCTACACCCGCTTCTCTAGCGCCTC
TAACCTATCCAAGCATCGACGCAGTCGTCCCGACACCTGTGGACAGCCGG
AATACGATTCGCCCGGTTCATCCGATGGGATGAAGAAACATAAGGCCTTC
CGCAAGAAGGACAGAAACAGGGACTCTGATGATGAAGATACCACCAGCGA
AGAATCGGAAGATAGCGATGATGACATTCCTCTGGCCAGTCGTCTGAAGA
CGAAGCTCAAGCAGGAGAGCCAGAACTCGGACTCGGGCGACGAGTGTCCC
GACTTCGAACCCAACAACAGTGAGGACGATGCGGATGCATCCGGATTCCA
GCTTCCTCCGCCGGCTATGGTCAAGGTGGAGGCCTTCGACGAAGAAGATT
TCGAGTACCAGGACGCCAGCATGTATGTGAAGACCGAAAGCACCGATATC
T
BS01304.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3998-PA | 2334 | zf30C-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zf30C-RA | 2976 | CG3998-RA | 405..1243 | 13..851 | 4180 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9760120..9760577 | 394..851 | 2290 | 100 | Plus |
| 2L | 23513712 | 2L | 9759679..9760054 | 20..395 | 1880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:34:31 has no hits.
BS01304.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:06 Download gff for
BS01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:38 Download gff for
BS01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3998-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:29:03 Download gff for
BS01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 397..1243 | 6..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:15:54 Download gff for
BS01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 397..1243 | 6..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:15:54 Download gff for
BS01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9760121..9760577 | 395..851 | 100 | | Plus |
| 2L | 9759674..9760053 | 11..394 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:29:03 Download gff for
BS01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9759674..9760053 | 11..394 | 98 | -> | Plus |
| arm_2L | 9760121..9760577 | 395..851 | 100 | | Plus |
BS01304.complete Sequence
2366 bp assembled on 2007-10-17
GenBank Submission: FJ634591
> BS01304.complete
GAAGTTATCAGTCGACATGGAAACCGAGTCGATGGCTCCAAGCAGCAGTG
CGGCGGCTGCAGCCACCAAGCTCCTGGTGGAGATCACCACCGACGGAATA
CCCAAGCTGCACTGCCCGGTGTGCAACAAGGCGCTGGTCTCCCTAGCCGG
ATATGTGAAGCACGTAAAGAAGCACCAGCCGCCGGGCGGCTTCGAGTGCC
GTCACTGCGATGCTCGGTTTTGCCACGAGGAGGAGCTCACCCAGCATGCA
AAGGATGAGCACGGAGTCACTGGCGCGGTAGCTGGACAGGAGCGAAAGCC
TTTCGTTTGTGAAAAGTGCGGCGCGGAGTACAAGTACCAGGAGGCATACC
GTCGCCACTGCAGGACCAAGTGTGGCGAGGAAAAGCTACCCAGGGAGGAA
TCCCGACCAATGGAGTGCAAGTGCTGCTACACCCGCTTCTCTAGCGCCTC
TAACCTATCCAAGCATCGACGCAGTCGTCCCGACACCTGTGGACAGCCGG
AATACGATTCGCCCGGTTCATCCGATGGGATGAAGAAACATAAGGCCTTC
CGCAAGAAGGACAGAAACAGGGACTCTGATGATGAAGATACCACCAGCGA
AGAATCGGAAGATAGCGATGATGACATTCCTCTGGCCAGTCGTCTGAAGA
CGAAGCTCAAGCAGGAGAGCCAGAACTCGGACTCGGGCGACGAGTGTCCC
GACTTCGAACCCAACAACAGTGAGGACGATGCGGATGCATCCGGATTCCA
GCTTCCTCCGCCGGCTATGGTCAAGGTGGAGGCCTTCGACGAAGAAGATT
TCGAGTACCAGGACGCCAGCATGTATGTGAAGACCGAAAGCACCGATATC
TTTAGCAACGAAAAGGATAAGCTGCTGGATGTGCTGCTCAATGAGGGTGA
TGGCTTAAAGCCCTTTGAGAGCCTAAAGGTGGAACAGGGCGCTGGTATAC
TAGACGAAATCGCGGCCGTGCCGCTAGTGGAGGTTGCGGAAGAAGATGTC
TTAGAACTGAGGGGTCATCAAATGGAAAAACCTCCCGGACCAAGAAAGCG
GGGCAGACCGCCAAAGGAAAAGATACCTGTGGTCAAGAGAAAGTATCGCA
AACGAAACGCACCTAGATCGCCCTCGCCTGACGATTCATCGGGTACACCA
AAACGCGTAGCTAAGATCAGCAAAAAGGAGCTAAAGGAGCGCCTTAAGAT
GATCAACAAGATGGAAAAATCCTGGAAGTGTCCTCACTGCGTAAAAATCT
ACCACATCCGCAAGCCCTACGAAAAGCATTTGCGCGACGACCACAAGTTA
AATGAGGCGGAAATGAAAGAGATCTTTAAGGACGTGGACGTCCATGCTAA
GCTGGACGAGGAAGTCTTTAAGTGTCCCATATGCAGCAAGATCTATTTGG
TGGAGAAGCGCTTGGTCACCCACATGAAGGTGCATGGCGAAGATGGCAAG
CTGACTTTCAAGTGCCCATGCTACTGCAACCTCTTCTTCGCCACCAAGGA
ACAGGCCACTGAGCATGCTAGGGCCCAGCACAAGGAACTGCTCTACTGCG
AAAAATGCGACAAGTACATGACCGGACACGACAGCCTCAAGAACCACGAA
CGCAATTTCCACTCGAAGAAGGAGCCGCGCAGCCAGCAGCGCAACCTCAT
CTGCGACAAGTGCGGCAAGAAGTTCACCGGACGCACATCGCTCTCTGACC
ACGTTCGTTCTGACTGCGGCCGTCTACCGCTCTACGGCTGCAGCGTTTGC
GGCAAACATTTGTCCACCGCTGGTATTCTCAAGACGCACATGCTCCTTCA
CAAGGCAGACACTCCGTACCAGTGCGATAAGTGCGGCAAAACATTCAAGG
TGAAGGCGCAATACAAGTCGCACTTGAAGACGCGCCACACGGACTACAAG
CCGTACAAGTGCCACCTGTGTCCCAAGGAGTATCCGTACAGGGAGAGTCT
GCTCACCCACATGACCGTGCACACGGGCATTAAGCGTTTCCTGTGCAATA
ACTGCGGCAAGCGCTTCACTTGCATCTCCAACTTGCAGGCACATCGCAAG
GTGCATGCCGATACCTGCGGCCAGTTGCCTTTGAATGCCAAGGCCACCCA
GTACATGGGCGTGCAGCGCGGAAAACTCTTGATGGGCGCTAAGCCGGAGG
CGGGCATGGAGTACGAGGAGACCAAGACCTTGATCGCCCAGGATGTCATC
GACAGGGACATGCCCATGGCACAGGAGCTCAACTTCCCATCTGACGGCTC
AGCGCCATTGGCCACGGTGCCCCTGAACTACGCCTCCACACACCTGGTGC
CACACATCGTACTGCAGACCATGCAAGCCGAGGCCCGGCGAATGGAGTAA
AAGCTTTCTAGACCAT
BS01304.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zf30C-RA | 2334 | CG3998-PA | 1..2334 | 17..2350 | 11670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zf30C-RA | 2976 | CG3998-RA | 405..2742 | 13..2350 | 11675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9760120..9761499 | 394..1773 | 6900 | 100 | Plus |
| 2L | 23513712 | 2L | 9761564..9762141 | 1773..2350 | 2890 | 100 | Plus |
| 2L | 23513712 | 2L | 9759679..9760054 | 20..395 | 1880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:31:30 has no hits.
BS01304.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:03:05 Download gff for
BS01304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 1..2334 | 17..2350 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:31:48 Download gff for
BS01304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 401..2749 | 6..2356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:26 Download gff for
BS01304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 409..2740 | 17..2348 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:09 Download gff for
BS01304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 413..2744 | 17..2348 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:18 Download gff for
BS01304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 409..2740 | 17..2348 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:18 Download gff for
BS01304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9759678..9760053 | 17..394 | 99 | -> | Plus |
| 2L | 9760121..9761499 | 395..1773 | 100 | -> | Plus |
| 2L | 9761565..9762139 | 1774..2348 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:26 Download gff for
BS01304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9759678..9760053 | 17..394 | 99 | -> | Plus |
| arm_2L | 9760121..9761499 | 395..1773 | 100 | -> | Plus |
| arm_2L | 9761565..9762139 | 1774..2348 | 100 | | Plus |
BS01304.pep Sequence
Translation from 16 to 2349
> BS01304.pep
METESMAPSSSAAAAATKLLVEITTDGIPKLHCPVCNKALVSLAGYVKHV
KKHQPPGGFECRHCDARFCHEEELTQHAKDEHGVTGAVAGQERKPFVCEK
CGAEYKYQEAYRRHCRTKCGEEKLPREESRPMECKCCYTRFSSASNLSKH
RRSRPDTCGQPEYDSPGSSDGMKKHKAFRKKDRNRDSDDEDTTSEESEDS
DDDIPLASRLKTKLKQESQNSDSGDECPDFEPNNSEDDADASGFQLPPPA
MVKVEAFDEEDFEYQDASMYVKTESTDIFSNEKDKLLDVLLNEGDGLKPF
ESLKVEQGAGILDEIAAVPLVEVAEEDVLELRGHQMEKPPGPRKRGRPPK
EKIPVVKRKYRKRNAPRSPSPDDSSGTPKRVAKISKKELKERLKMINKME
KSWKCPHCVKIYHIRKPYEKHLRDDHKLNEAEMKEIFKDVDVHAKLDEEV
FKCPICSKIYLVEKRLVTHMKVHGEDGKLTFKCPCYCNLFFATKEQATEH
ARAQHKELLYCEKCDKYMTGHDSLKNHERNFHSKKEPRSQQRNLICDKCG
KKFTGRTSLSDHVRSDCGRLPLYGCSVCGKHLSTAGILKTHMLLHKADTP
YQCDKCGKTFKVKAQYKSHLKTRHTDYKPYKCHLCPKEYPYRESLLTHMT
VHTGIKRFLCNNCGKRFTCISNLQAHRKVHADTCGQLPLNAKATQYMGVQ
RGKLLMGAKPEAGMEYEETKTLIAQDVIDRDMPMAQELNFPSDGSAPLAT
VPLNYASTHLVPHIVLQTMQAEARRME*
BS01304.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zf30C-PA | 777 | CG3998-PA | 1..777 | 1..777 | 4204 | 100 | Plus |
| crol-PH | 686 | CG14938-PH | 184..459 | 404..680 | 343 | 30.7 | Plus |
| crol-PB | 891 | CG14938-PB | 442..664 | 448..680 | 339 | 33.2 | Plus |
| CG11696-PA | 664 | CG11696-PA | 105..583 | 184..678 | 337 | 25.3 | Plus |
| CG5245-PA | 501 | CG5245-PA | 61..382 | 352..680 | 332 | 27 | Plus |
| CG5245-PA | 501 | CG5245-PA | 190..466 | 400..680 | 311 | 29.2 | Plus |
| crol-PH | 686 | CG14938-PH | 187..480 | 355..669 | 309 | 27.9 | Plus |
| CG5245-PA | 501 | CG5245-PA | 204..490 | 385..676 | 308 | 28.3 | Plus |
| crol-PH | 686 | CG14938-PH | 184..403 | 452..681 | 298 | 29.7 | Plus |
| crol-PH | 686 | CG14938-PH | 190..444 | 419..686 | 292 | 28.9 | Plus |
| crol-PH | 686 | CG14938-PH | 293..493 | 400..625 | 230 | 29.7 | Plus |
| crol-PH | 686 | CG14938-PH | 165..290 | 554..680 | 205 | 32.3 | Plus |
