Clone Sequence Records
BS01305.3prime Sequence
881 bp (741 high quality bases) assembled on 2005-11-29
> BS01305.3prime
ATGGTCTAGAAAGCTTCTACTCCTCATCCGAGTCGCCATCACTGGAGTAA
TGTGTGATTTGAGGGCGACGAATGAAAGGCGCCGTTATCACTTGTGCAAT
GCGGCGGTAGTGATTTAGCCACTCTTCCAGCATCTGGGCGACCAGCAAGG
GACGCTTGCTTAGCTTTTGTTGCGCCACCAGTAGGCCTCCATCAGTTACG
CACACGTCCAGCCATTGACGCATCATTGACTCCTCGTTGCCAACCTCCGA
CTGTGTAAGGAAATGTATGGGCAAAAGTTTCAGCTCGCAGTCCATTAGCG
GGAGATAGGTTACGTCCTCCACATCGTCACGCCGCCCATCGATGCGAGTG
AATGGCTCCATCGGCACCAGGGCGCTGAAATGGCCACGTGTGTAGCCCAG
TGCTATCGGTGACTTGGTGCAAAAGTTTTGATCCCAGAACAAAGGCAAGT
AGACACCTTCGAAACGCGCGTATCCAATGTCCTCGCCCCGAAAACTCTTG
ACGTACTTCACGCCGTAAACGATAATCGGCCGACGAAGGATATGCGCCAG
CGCAAAGATGTGCAGTTGCTCCAGGGACGAGCCGGGTTGGCCGGCCAATG
ACAGTAGTGTACTCCAGTCCTCCTCGAACTGAGAGTCCTCCAGCGTAAAG
TGGAGCATCGAAGCCTGCAGCATCTCGTACTCTTTCCAGCGAGTAAAGAA
CACATGCCCGCACTGGTGCAGTGTGTCGGCGAGTGCCCGCCTAAGGATAT
TGTCACGATCGAAGACGCCCCAGGTGGCCTGCATGGCCGAGTCCAGCAGG
CAGTCGCCAGCACTGCGGTTCCACAGTACAAACATCCGTGAGCTCAGGCG
AGCAGTGATCTCCAGCGACCAATTCAAGGCC
BS01305.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9448-PA | 2337 | CG9448-RA | 1473..2337 | 881..17 | 4325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbd-RA | 3679 | CG9448-RA | 2063..2928 | 881..16 | 4330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9707373..9707619 | 455..701 | 1235 | 100 | Plus |
| 3R | 32079331 | 3R | 9707105..9707320 | 243..458 | 1080 | 100 | Plus |
| 3R | 32079331 | 3R | 9707683..9707864 | 700..881 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 9706892..9707042 | 96..246 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 9706747..9706826 | 16..95 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:08:01 has no hits.
BS01305.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:07 Download gff for
BS01305.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9448-PA | 1473..2337 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:39 Download gff for
BS01305.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9448-PA | 1473..2337 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:16:25 Download gff for
BS01305.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbd-RA | 2063..2928 | 16..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:41:58 Download gff for
BS01305.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbd-RA | 2063..2928 | 16..881 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:41:58 Download gff for
BS01305.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9707375..9707619 | 457..701 | 100 | <- | Plus |
| 3R | 9706747..9706826 | 16..95 | 100 | <- | Plus |
| 3R | 9706892..9707040 | 96..244 | 100 | <- | Plus |
| 3R | 9707107..9707318 | 245..456 | 100 | <- | Plus |
| 3R | 9707685..9707864 | 702..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:16:25 Download gff for
BS01305.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5532469..5532548 | 16..95 | 100 | <- | Plus |
| arm_3R | 5532614..5532762 | 96..244 | 100 | <- | Plus |
| arm_3R | 5532829..5533040 | 245..456 | 100 | <- | Plus |
| arm_3R | 5533097..5533341 | 457..701 | 100 | <- | Plus |
| arm_3R | 5533407..5533586 | 702..881 | 100 | | Plus |
BS01305.5prime Sequence
763 bp (743 high quality bases) assembled on 2005-11-29
> BS01305.5prime
GAAGTTATCAGTCGACATGTGCGATACCAAAGACGATGCGCAGAAATGGA
AATGTGAAACTTGCACCTACGAGAACTACCCATCCTCGCTGAAATGCACC
ATGTGCCAGGCGTCCAAGCCGCTGCTCAACGAGGACATCTTCCGTCTGAG
TCCAGCCCAGGAGAGCTGCACCGTTGCGGAGGAGGCGGCTGCCGTCGAAG
TAGCCGTAATGTCGCCCACACCTTCGTCCACGTGCTACTCGCTCCAGCCG
CAGAGCCAGGCACGGCAGAGCAACGTGGCGGACAGCGAAAAGTGGCCCTG
CAAGGTGTGCACCTATCTCAATTGGCCGCGGAGCCTGCGCTGCGTTCAGT
GCTGCACGAAGCGCGGTGGCGAGGCGATAGAGCGTGGCAAAAAGGACATG
GATAACGAGGCGGACGGGGATCGTGCAGGAGAGGCGCTGCAAGCCCTTCG
CATCAGCGGCTCGGAGGAGAACCTGGCCAATAAGCCGGTTCAGCTCATCG
GCGCCACGGCCTCCCATCGTTTGAGCCTTAGTCGTGGCATAGACGATGCG
ACCCATCTGAACAATCTCGCCAATGCGTCTCACAACCAGTCGCAGTCCCA
GCACCGGCAGCCTGTCCTACAGCAGCAGATGCAGCTCCAGCTGCAGCCGC
AGCAACAGCGGGAATCCTCATCCTCCGCCGCCGTCCCGCCGCAGCAGCAG
AAGCAGTGCTATGTCTCCAAATGGGCGTGTAACTCTTGCACTTACGAAAA
CTGGCCGAGGAGC
BS01305.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9448-PA | 2337 | CG9448-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbd-RA | 3679 | CG9448-RA | 591..1337 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9708736..9709325 | 733..144 | 2950 | 100 | Minus |
| 3R | 32079331 | 3R | 9709388..9709515 | 144..17 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:05:49 has no hits.
BS01305.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:08 Download gff for
BS01305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9448-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:41 Download gff for
BS01305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9448-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:16 Download gff for
BS01305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbd-RA | 583..1337 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:05 Download gff for
BS01305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbd-RA | 583..1337 | 9..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:05 Download gff for
BS01305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9708646..9708675 | 734..763 | 100 | <- | Minus |
| 3R | 9708736..9709324 | 145..733 | 100 | <- | Minus |
| 3R | 9709388..9709523 | 9..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:16 Download gff for
BS01305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5534368..5534397 | 734..763 | 100 | <- | Minus |
| arm_3R | 5534458..5535046 | 145..733 | 100 | <- | Minus |
| arm_3R | 5535110..5535245 | 9..144 | 97 | | Minus |
BS01305.complete Sequence
2369 bp (2369 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634592
> BS01305.complete
GAAGTTATCAGTCGACATGTGCGATACCAAAGACGATGCGCAGAAATGGA
AATGTGAAACTTGCACCTACGAGAACTACCCATCCTCGCTGAAATGCACC
ATGTGCCAGGCGTCCAAGCCGCTGCTCAACGAGGACATCTTCCGTCTGAG
TCCAGCCCAGGAGAGCTGCACCGTTGCGGAGGAGGCGGCTGCCGTCGAAG
TAGCCGTAATGTCGCCCACACCTTCGTCCACGTGCTACTCGCTCCAGCCG
CAGAGCCAGGCACGGCAGAGCAACGTGGCGGACAGCGAAAAGTGGCCCTG
CAAGGTGTGCACCTATCTCAATTGGCCGCGGAGCCTGCGCTGCGTTCAGT
GCTGCACGAAGCGCGGTGGCGAGGCGATAGAGCGTGGCAAAAAGGACATG
GATAACGAGGCGGACGGGGATCGTGCAGGAGAGGCGCTGCAAGCCCTTCG
CATCAGCGGCTCGGAGGAGAACCTGGCCAATAAGCCGGTTCAGCTCATCG
GCGCCACGGCCTCCCATCGTTTGAGCCTTAGTCGTGGCATAGACGATGCG
ACCCATCTGAACAATCTCGCCAATGCGTCTCACAACCAGTCGCAGTCCCA
GCACCGGCAGCCTGTCCTACAGCAGCAGATGCAGCTCCAGCTGCAGCCGC
AGCAACAGCGGGAATCCTCATCCTCCGCCGCCGTCCCGCCGCAGCAGCAG
AAGCAGTGCTATGTCTCCAAATGGGCGTGTAACTCTTGCACTTACGAAAA
CTGGCCGAGGAGCATCAAGTGCTCCATGTGCGGCAAGACGAGGGAGCGGG
AGATTAGTGGGTCGCAGAACGACTTGCACGCCTCATCCAGCCTAAACAGT
CAGGAGGAGAATCAGCAACAACTGCAGCAGCCAAACGTGGATACCGTCAG
CGTCAATAACTCGTTCAATAAGAAGCACATTTACCAACTGGGTTCTTCGG
AAACCATCAACAACTGTGATACGCTGCAAGAGCGTCAGGAGCGCCGCCAG
CGTCAAATCCGACGACAGGTGGACTGGCAGTGGCTGAATGCGTGCCTGGG
CGTCGTGGAGAACAACTACAGCGCTGTGGAGGCGTACCTCTCCTGCGGTG
GCAATCCAGCCCGTTCGTTGACCAGCACCGAGATTGCCGCCCTCAACCGC
AACTCGGCCTTCGACGTGGGCCACACCCTGATCCACCTGGCCATTCGTTT
TCATCGCGAGGAGATGTTACCGATGCTGCTGGACCAGATCTCCGGTTCGG
GGCCGGGCATCAAGCGTGTGCCGTCCTACGTGGCTCCCGACTTGGCGGCC
GATATCCGGCGCCACTTTGCCAATACCCTGCGCTTGCGCAAGTCCGGTCT
ACCCTGCCACTATGTGCAAAAGCACGCCACCTTCGCCCTCCCCGCCGAGA
TTGAGGAGCTGCCGATACCCATACAGGAGCAGCTCTACGATGAGCTGCTC
GACCGCGACGCGCAGAAACAGCTGGAGACGCCGCCGCCGGCCTTGAATTG
GTCGCTGGAGATCACTGCTCGCCTGAGCTCACGGATGTTTGTACTGTGGA
ACCGCAGTGCTGGCGACTGCCTGCTGGACTCGGCCATGCAGGCCACCTGG
GGCGTCTTCGATCGTGACAATATCCTTAGGCGGGCACTCGCCGACACACT
GCACCAGTGCGGGCATGTGTTCTTTACTCGCTGGAAAGAGTACGAGATGC
TGCAGGCTTCGATGCTCCACTTTACGCTGGAGGACTCTCAGTTCGAGGAG
GACTGGAGTACACTACTGTCATTGGCCGGCCAACCCGGCTCGTCCCTGGA
GCAACTGCACATCTTTGCGCTGGCGCATATCCTTCGTCGGCCGATTATCG
TTTACGGCGTGAAGTACGTCAAGAGTTTTCGGGGCGAGGACATTGGATAC
GCGCGTTTCGAAGGTGTCTACTTGCCTTTGTTCTGGGATCAAAACTTTTG
CACCAAGTCACCGATAGCACTGGGCTACACACGTGGCCATTTCAGCGCCC
TGGTGCCGATGGAGCCATTCACTCGCATCGATGGGCGGCGTGACGATGTG
GAGGACGTAACCTATCTCCCGCTAATGGACTGCGAGCTGAAACTTTTGCC
CATACATTTCCTTACACAGTCGGAGGTTGGCAACGAGGAGTCAATGATGC
GTCAATGGCTGGACGTGTGCGTAACTGATGGAGGCCTACTGGTGGCGCAA
CAAAAGCTAAGCAAGCGTCCCTTGCTGGTCGCCCAGATGCTGGAAGAGTG
GCTAAATCACTACCGCCGCATTGCACAAGTGATAACGGCGCCTTTCATTC
GTCGCCCTCAAATCACACATTACTCCAGTGATGGCGACTCGGATGAGGAG
TAGAAGCTTTCTAGACCAT
BS01305.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbd-RA | 2337 | CG9448-PA | 1..2337 | 17..2353 | 11685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbd-RA | 3679 | CG9448-RA | 591..2928 | 17..2354 | 11690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9707683..9708412 | 1670..941 | 3650 | 100 | Minus |
| 3R | 32079331 | 3R | 9708736..9709325 | 733..144 | 2950 | 100 | Minus |
| 3R | 32079331 | 3R | 9707373..9707619 | 1915..1669 | 1235 | 100 | Minus |
| 3R | 32079331 | 3R | 9707105..9707320 | 2127..1912 | 1080 | 100 | Minus |
| 3R | 32079331 | 3R | 9708466..9708675 | 943..734 | 1050 | 100 | Minus |
| 3R | 32079331 | 3R | 9706892..9707042 | 2274..2124 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 9709388..9709515 | 144..17 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 9706747..9706826 | 2354..2275 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:40:07 has no hits.
BS01305.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:22 Download gff for
BS01305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9448-RA | 1..2337 | 17..2353 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:30 Download gff for
BS01305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9448-RA | 578..2923 | 9..2354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:58 Download gff for
BS01305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbd-RA | 591..2927 | 17..2353 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:22 Download gff for
BS01305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9448-RA | 578..2923 | 9..2354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:24 Download gff for
BS01305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbd-RA | 591..2927 | 17..2353 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:24 Download gff for
BS01305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9706748..9706826 | 2275..2353 | 100 | <- | Minus |
| 3R | 9706892..9707040 | 2126..2274 | 100 | <- | Minus |
| 3R | 9707107..9707318 | 1914..2125 | 100 | <- | Minus |
| 3R | 9707375..9707619 | 1669..1913 | 100 | <- | Minus |
| 3R | 9707685..9708411 | 942..1668 | 100 | <- | Minus |
| 3R | 9708468..9708675 | 734..941 | 100 | <- | Minus |
| 3R | 9708736..9709324 | 145..733 | 100 | <- | Minus |
| 3R | 9709388..9709515 | 17..144 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:58 Download gff for
BS01305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5532470..5532548 | 2275..2353 | 100 | <- | Minus |
| arm_3R | 5532614..5532762 | 2126..2274 | 100 | <- | Minus |
| arm_3R | 5532829..5533040 | 1914..2125 | 100 | <- | Minus |
| arm_3R | 5533097..5533341 | 1669..1913 | 100 | <- | Minus |
| arm_3R | 5533407..5534133 | 942..1668 | 100 | <- | Minus |
| arm_3R | 5534190..5534397 | 734..941 | 100 | <- | Minus |
| arm_3R | 5534458..5535046 | 145..733 | 100 | <- | Minus |
| arm_3R | 5535110..5535237 | 17..144 | 100 | | Minus |
BS01305.pep Sequence
Translation from 16 to 2352
> BS01305.pep
MCDTKDDAQKWKCETCTYENYPSSLKCTMCQASKPLLNEDIFRLSPAQES
CTVAEEAAAVEVAVMSPTPSSTCYSLQPQSQARQSNVADSEKWPCKVCTY
LNWPRSLRCVQCCTKRGGEAIERGKKDMDNEADGDRAGEALQALRISGSE
ENLANKPVQLIGATASHRLSLSRGIDDATHLNNLANASHNQSQSQHRQPV
LQQQMQLQLQPQQQRESSSSAAVPPQQQKQCYVSKWACNSCTYENWPRSI
KCSMCGKTREREISGSQNDLHASSSLNSQEENQQQLQQPNVDTVSVNNSF
NKKHIYQLGSSETINNCDTLQERQERRQRQIRRQVDWQWLNACLGVVENN
YSAVEAYLSCGGNPARSLTSTEIAALNRNSAFDVGHTLIHLAIRFHREEM
LPMLLDQISGSGPGIKRVPSYVAPDLAADIRRHFANTLRLRKSGLPCHYV
QKHATFALPAEIEELPIPIQEQLYDELLDRDAQKQLETPPPALNWSLEIT
ARLSSRMFVLWNRSAGDCLLDSAMQATWGVFDRDNILRRALADTLHQCGH
VFFTRWKEYEMLQASMLHFTLEDSQFEEDWSTLLSLAGQPGSSLEQLHIF
ALAHILRRPIIVYGVKYVKSFRGEDIGYARFEGVYLPLFWDQNFCTKSPI
ALGYTRGHFSALVPMEPFTRIDGRRDDVEDVTYLPLMDCELKLLPIHFLT
QSEVGNEESMMRQWLDVCVTDGGLLVAQQKLSKRPLLVAQMLEEWLNHYR
RIAQVITAPFIRRPQITHYSSDGDSDEE*
BS01305.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbd-PA | 778 | CG9448-PA | 1..778 | 1..778 | 4119 | 100 | Plus |
