Clone Sequence Records
BS01309.3prime Sequence
858 bp (765 high quality bases) assembled on 2005-11-29
> BS01309.3prime
ATGGTCTAGAAAGCTTCTACTCCTTAAACTCTGGCTTAAAGCTAAACTCT
GCCTTCGGCTGCTGGACTCCGGCTCCATTTGCCGCCGCTGCCGCCGCCGC
TGCTGCCGATGCGGCGCTAAGTGCTGCCAGGTTGCCGAGCATGGAGGAAT
TCTGGGTCATTCCCGGATAGAGGTTCTGGTAGAAGAGGGGATTCTGCAAC
TGGAAGAGGGCCATCAGGTGGGTGAGCTGGAAGTTAGGGGCTGTGGGATC
CACTCCAGGAGCGGCGGCAGCGGGCAGGAGACCGGGAAAGAGTCCACTTG
TCAGCGGATGCACAGCGGCTGCTGGCTGGGACTGGGGCAGGAGCATGGCG
GGATTAGAGGACTCGTCTTCGACTTTCAGGCGCTTGGCTTCCGACTGCTG
AGCGTCGGCTGGCAGTTGGATTTTCTTGGGTGGCCTGCCGCGTTTCCGAG
CCAGGAAGTGCTCGGCGGACAAAGAGGAGAGTGGAGTGGAGGTGTTGCTG
CCGCCGCATACAGAGCTGCTGCTCTGGGATTGACTAAGGCTGGTGGGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGGGGCATGGCATCCAGGGAGGACT
CCTCCACGTCCTGCTTGATCTTAAACTGCTGGTACGCCTGCTCTCCGTCC
TGACGATCGTGCTTTCTCTTGTGGCTGATCATCTGGCTGCTGGAGTGCAG
GATGTAGTCGCAGCCCTCGCGGACGCAGTGGATGTGGTTGCAGACGGTGG
AGAACTTGCAGGCGTCGAAGGGACATACCTCGGTCTTCAGGATCTTCTTG
AAAGCGTCCATCTTCAGCTGGTGGTCCTTCAGATGGTAAGTTTTGTGCTT
GTCCATAT
BS01309.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2102-PA | 2382 | cas-RA | 1541..2382 | 858..17 | 4160 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cas-RC | 2845 | CG2102-RC | 1428..2269 | 858..17 | 4180 | 99.8 | Minus |
| cas-RA | 3151 | CG2102-RA | 1734..2575 | 858..17 | 4180 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5714024..5714458 | 419..853 | 2145 | 99.5 | Plus |
| 3R | 32079331 | 3R | 5713551..5713952 | 17..418 | 2010 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 19:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 877..943 | 62..129 | 112 | 66.7 | Plus |
BS01309.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:16 Download gff for
BS01309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-PA | 1541..2382 | 17..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:49 Download gff for
BS01309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2102-PA | 1541..2382 | 17..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:16:18 Download gff for
BS01309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 1734..2579 | 14..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:36:17 Download gff for
BS01309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 1734..2579 | 14..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:36:17 Download gff for
BS01309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5714024..5714460 | 419..858 | 98 | | Plus |
| 3R | 5713547..5713952 | 14..418 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:16:18 Download gff for
BS01309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1539269..1539674 | 14..418 | 99 | <- | Plus |
| arm_3R | 1539746..1540182 | 419..858 | 98 | | Plus |
BS01309.5prime Sequence
890 bp (799 high quality bases) assembled on 2005-11-29
> BS01309.5prime
GAAGTTATCAGTCGACATGTCCAACCAAATGGAGTTTATTATGCAACTCT
ACATGATGAACTTGATGAAGCAGCAGCAGCAAATGCAGCTCCAGCTTCCG
CAGCAGCAACAGCAGCAGCAGCTGGCTGGATACACTTACACACAGAACGA
GGATATCTCTAGCAGCACATCCGTGCAGCAGCAACAGCAGCAGCAGCAGG
AGCAACTGCAGCAGCCACAGCCAGATCTCCGCAAGACAAGAACGCACAAG
CGCATTAGCTCGCAAAACACCAACTGTAGTAGTAGCCGTAGTTGTAGTCC
CAATAGTAATTTGATTGCTTTTCAACCACAACAATACCCAGGCGCTACAG
CGGCAACTCCTTCCACTCCCAACAGCCACCCCAGCAACCTGGTCAACCAG
ATGCTGCTCCAAAGCCTGCCGCCGCTGACGCAGCTCATGTTGCAGCAGCA
GCAGCAGCAACATTTGCTGACCACCTCCAACCTTCTACTAACACCCACCC
ACACCCCCAGTTCGCTGGGCAAGCAGGATCCACTGCAGCATCCGTTGTTG
CTGGGCCAGTTTGCCGGCTCCGAACAGATGGCCACAAATAACTTCCTTCA
ATCATCCACAGTGACCTCCACGCCCATCGAGAGAGAGAAGGCAGCCACAC
CAGCACCCTCCGCCGGAGCAACTGCCGGCAACCTTTCGGCGGCCCAGGTC
AAGTTTGAGCAGGAGTCCGCCGACGACGATGAGGACGATGATAAGCCGCT
GTCCAGCCTCACCAGCTGCAGCTCCTCGGGCCACACCAACGCCAGCTCCG
AGAAGCTGCTGTTGTCGGGCGTCCATCCGCTGGAGTCAACCACCGACAGC
CTAGACTCACCCAGCATGTATACGCCCGGTCAGCAGCCCG
BS01309.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2102-PA | 2382 | cas-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cas-RA | 3151 | CG2102-RA | 194..1065 | 17..888 | 4315 | 99.8 | Plus |
| cas-RC | 2845 | CG2102-RC | 194..482 | 17..305 | 1445 | 100 | Plus |
| cas-RC | 2845 | CG2102-RC | 483..759 | 612..888 | 1340 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:10:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5715761..5716612 | 868..17 | 4260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:10:50 has no hits.
BS01309.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:17 Download gff for
BS01309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-PA | 1..873 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:14:51 Download gff for
BS01309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2102-PA | 1..873 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:42:21 Download gff for
BS01309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 194..1066 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:27 Download gff for
BS01309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 194..1066 | 17..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:27 Download gff for
BS01309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5715761..5716612 | 17..868 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:42:21 Download gff for
BS01309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1541483..1542334 | 17..868 | 100 | | Minus |
BS01309.complete Sequence
2414 bp (2414 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634594
> BS01309.complete
GAAGTTATCAGTCGACATGTCCAACCAAATGGAGTTTATTATGCAACTCT
ACATGATGAACTTGATGAAGCAGCAGCAGCAAATGCAGCTCCAGCTTCCG
CAGCAGCAACAGCAGCAGCAGCTGGCTGGATACACTTACACACAGAACGA
GGATATCTCTAGCAGCACATCCGTGCAGCAGCAACAGCAGCAGCAGCAGG
AGCAACTGCAGCAGCCACAGCCAGATCTCCGCAAGACAAGAACGCACAAG
CGCATTAGCTCGCAAAACACCAACTGTAGTAGTAGCCGTAGTTGTAGTCC
CAATAGTAATTTGATTGCTTTTCAACCACAACAATACCCAGGCGCTACAG
CGGCAACTCCTTCCACTCCCAACAGCCACCCCAGCAACCTGGTCAACCAG
ATGCTGCTCCAAAGCCTGCCGCCGCTGACGCAGCTCATGTTGCAGCAGCA
GCAGCAGCAACATTTGCTGACCACCTCCAACCTTCTACTAACACCCACCC
ACACCCCCAGTTCGCTGGGCAAGCAGGATCCACTGCAGCATCCGTTGTTG
CTGGGCCAGTTTGCCGGCTCCGAACAGATGGCCACAAATAACTTCCTTCA
ATCATCCACAGTGACCTCCACGCCCATCGAGAGAGAGAAGGCAGCCACAC
CAGCACCCTCCGCCGGAGCAACTGCCGGCAACCTTTCGGCGGCCCAGGTC
AAGTTTGAGCAGGAGTCCGCCGACGACGATGAGGACGATGATAAGCCGCT
GTCCAGCCTCACCAGCTGCAGCTCCTCGGGCCACACCAACGCCAGCTCCG
AGAAGCTGCTGTTGTCGGGCGTCCATCCGCTGGAGTCAACCACCGACAGC
CTAGACTCACCCAGCATGTATACGCCCGTCAAGCAGCCGGCGGACTCATC
GTACGGACTCATCACACCCGTCGACAGTGATCTGACCCCCAACACACCCC
TCCAACCGACCCAAACAATATCCCTGCTGACGCCGCCGTCGAGTGAGCAG
AGCAAGAGCCTGGTGAGCCTCTCGGCGGCCAGCGGCCTGGATGCTCTGCT
CCAGAACGAGGAGGTACTGAAGAACCTGCGGAAAGTGTCCTCCTACCTGG
AGTGCGAGAACAGCCTGTGCAGGCAGGAGAACCTGCGGGAGCACTTCCAT
TGCCACGAGGAGCCCTGCCAGGGCAAGATCCTGAGCAAGAAGGACGACAT
CATCCGGCACCTGAAGTGGCACAAGAAGCGCAAGGAAAGCCTCAAGCTGG
GCTTTGCCCGCTTCTCCTCCTCGGACGACTGTGCACCAGCCTACGGAGAG
GGTTGCGCCTACAACTGGAAACAGACCCACTACCACTGCGTCTACGAGCA
CTGTCCCAAGGTGTATGTGAGCACCAGTGACGTCCAGATGCATGCCAATT
TCCACCGCAAGGACTCCGAGATCGTGAACGAGGGCTTCCGGCGCTTCCGG
GCGCACGAGACCTGCCGCATCGAGGATTGCCCCTTTTTCGGCAAGAAGAT
CTCCCACTACCACTGCTGTCGCGAGGGATGCACCCACACCTTCAAGAACA
AGGCCGATATGGACAAGCACAAAACTTACCATCTGAAGGACCACCAGCTG
AAGATGGACGGCTTCAAGAAGATCCTGAAGACCGAGGTATGTCCCTTCGA
CGCCTGCAAGTTCTCCACCGTCTGCAACCACATCCACTGCGTCCGCGAGG
GCTGCGACTACATCCTGCACTCCAGCAGCCAGATGATCAGCCACAAGAGA
AAGCACGATCGTCAGGACGGAGAGCAGGCGTACCAGCAGTTTAAGATCAA
GCAGGACGTGGAGGAGTCCTCCCTGGATGCCATGCCCCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCCCACCAGCCTTAGTCAATCCCAGAGCAGCAGC
TCTGTATGCGGCGGCAGCAACACCTCCACTCCACTCTCCTCTTTGTCCGC
CGAGCACTTCCTGGCTCGGAAACGCGGCAGGCCACCCAAGAAAATCCAAC
TGCCAGCCGACGCTCAGCAGTCGGAAGCCAAGCGCCTGAAAGTCGAAGAC
GAGTCCTCTAATCCCGCCATGCTCCTGCCCCAGTCCCAGCCAGCAGCCGC
TGTGCATCCGCTGACAAGTGGACTCTTTCCCGGTCTCCTGCCCGCTGCCG
CCGCTCCTGGAGTGGATCCCACAGCCCCTAACTTCCAGCTCACCCACCTG
ATGGCCCTCTTCCAGTTGCAGAATCCCCTCTTCTACCAGAACCTCTATCC
GGGAATGACCCAGAATTCCTCCATGCTCGGCAACCTGGCAGCACTTAGCG
CCGCATCGGCAGCAGCGGCGGCGGCAGCGGCGGCAAATGGAGCCGGAGTC
CAGCAGCCGAAGGCAGAGTTTAGCTTTAAGCCAGAGTTTAAGGAGTAGAA
GCTTTCTAGACCAT
BS01309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cas-RA | 2382 | CG2102-PA | 1..2382 | 17..2398 | 11910 | 100 | Plus |
| cas-RC | 2076 | CG2102-PC | 290..2076 | 612..2398 | 8935 | 100 | Plus |
| cas-RC | 2076 | CG2102-PC | 1..289 | 17..305 | 1445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cas-RA | 3151 | CG2102-RA | 194..2575 | 17..2398 | 11910 | 100 | Plus |
| cas-RC | 2845 | CG2102-RC | 483..2269 | 612..2398 | 8935 | 100 | Plus |
| cas-RC | 2845 | CG2102-RC | 194..482 | 17..305 | 1445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5715761..5716612 | 868..17 | 4260 | 100 | Minus |
| 3R | 32079331 | 3R | 5714528..5715222 | 1562..868 | 3475 | 100 | Minus |
| 3R | 32079331 | 3R | 5714024..5714458 | 1996..1562 | 2175 | 100 | Minus |
| 3R | 32079331 | 3R | 5713551..5713952 | 2398..1997 | 2010 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:27:06 has no hits.
BS01309.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:05 Download gff for
BS01309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 1..2382 | 17..2398 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:35 Download gff for
BS01309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 689..3074 | 17..2401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:24 Download gff for
BS01309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 194..2575 | 17..2398 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:05 Download gff for
BS01309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 689..3074 | 17..2401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:40 Download gff for
BS01309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 194..2575 | 17..2398 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:40 Download gff for
BS01309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5714024..5714457 | 1563..1996 | 100 | <- | Minus |
| 3R | 5713551..5713952 | 1997..2398 | 100 | <- | Minus |
| 3R | 5714528..5715221 | 869..1562 | 100 | <- | Minus |
| 3R | 5715761..5716612 | 17..868 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:24 Download gff for
BS01309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1539746..1540179 | 1563..1996 | 100 | <- | Minus |
| arm_3R | 1539273..1539674 | 1997..2398 | 100 | <- | Minus |
| arm_3R | 1540250..1540943 | 869..1562 | 100 | <- | Minus |
| arm_3R | 1541483..1542334 | 17..868 | 100 | | Minus |
BS01309.pep Sequence
Translation from 16 to 2397
> BS01309.pep
MSNQMEFIMQLYMMNLMKQQQQMQLQLPQQQQQQQLAGYTYTQNEDISSS
TSVQQQQQQQQEQLQQPQPDLRKTRTHKRISSQNTNCSSSRSCSPNSNLI
AFQPQQYPGATAATPSTPNSHPSNLVNQMLLQSLPPLTQLMLQQQQQQHL
LTTSNLLLTPTHTPSSLGKQDPLQHPLLLGQFAGSEQMATNNFLQSSTVT
STPIEREKAATPAPSAGATAGNLSAAQVKFEQESADDDEDDDKPLSSLTS
CSSSGHTNASSEKLLLSGVHPLESTTDSLDSPSMYTPVKQPADSSYGLIT
PVDSDLTPNTPLQPTQTISLLTPPSSEQSKSLVSLSAASGLDALLQNEEV
LKNLRKVSSYLECENSLCRQENLREHFHCHEEPCQGKILSKKDDIIRHLK
WHKKRKESLKLGFARFSSSDDCAPAYGEGCAYNWKQTHYHCVYEHCPKVY
VSTSDVQMHANFHRKDSEIVNEGFRRFRAHETCRIEDCPFFGKKISHYHC
CREGCTHTFKNKADMDKHKTYHLKDHQLKMDGFKKILKTEVCPFDACKFS
TVCNHIHCVREGCDYILHSSSQMISHKRKHDRQDGEQAYQQFKIKQDVEE
SSLDAMPQQQQQQQQQQPTSLSQSQSSSSVCGGSNTSTPLSSLSAEHFLA
RKRGRPPKKIQLPADAQQSEAKRLKVEDESSNPAMLLPQSQPAAAVHPLT
SGLFPGLLPAAAAPGVDPTAPNFQLTHLMALFQLQNPLFYQNLYPGMTQN
SSMLGNLAALSAASAAAAAAAAANGAGVQQPKAEFSFKPEFKE*
BS01309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cas-PA | 793 | CG2102-PA | 1..793 | 1..793 | 4153 | 100 | Plus |
| cas-PC | 691 | CG2102-PC | 1..691 | 1..793 | 3182 | 81.1 | Plus |
| CG7512-PB | 540 | CG7512-PB | 335..528 | 403..579 | 203 | 25.1 | Plus |
| Spps-PA | 968 | CG5669-PA | 375..824 | 13..465 | 177 | 22.6 | Plus |
| Spps-PB | 985 | CG5669-PB | 375..824 | 13..465 | 177 | 22.6 | Plus |
