Clone Sequence Records
BS01313.3prime Sequence
856 bp (820 high quality bases) assembled on 2005-11-29
> BS01313.3prime
ATGGTCTAGAAAGCTTCTAAGAGTCCTGCTCAATCATATCCATCAGCTGC
AGAAACTCCTGGGAAGCGCCATCGACCTCGTTTTCCCCATCGCCATACTC
CTCATAATCATCGTCGTCCTCGAAACCAAAGCAGTTTTTGGCACTGATCT
TGGAGTTGGCGCTCGGTTCGTGCTTGACCAACACCTCCTCGTCGCCATTA
ACCAGCTCTACGACCATTACCTCGCCATCATCCCCTTGCCATTCCACGGT
GAAGTCCGAGTTGTCCGGCTCCTCCTTGATGTGGAACGTCTTGGTGCCCC
GTTGACTTCGGAGGCGTTGATTGATGATCATCGGCTGCTTTTCGGAGGCG
GCAAGCCTGGCCTGTTTGTTGATAATGATAGGTGCTGGCTTGATTCTCTG
ACGGATCGGATCACTGACTATGGTTTCCACATCATCATCGGCGTCTTCAG
CCTCCGAGTTCTCCGGCTCGATTTCAGCCAAGTCATAGCTCTCTGGGTTG
TCATCCTCTTCGTTTTCCTCCTGGTCCCGGTCCATATCCACATACTGATC
CTTGATCAACGTGATGACAGTGCCATCTTTCTGCAGCCGCACATTGCGGC
CCAATTTAAGGCGACGCCGCTTTTCGCGAGCATTCGCCGAATCATCGTGA
GTCTCCATGTGTCTCATTAGATTACCCTTGTGGGTAAACTCCCGCGGACA
ACTCGGACACTTGTGCAGTTTCTCGCGCGGTTCTGGTGGCTGATACTCTT
CGTTGTGCACGAGATTCATATGGCGGCGCAGCAATTGACGCTGCCGGAAG
GCCTGCGGGCACTGATCGCAATGGAACGGCTTTTCGTCCAGGTGGATGAG
CATGTG
BS01313.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8591-PA | 2457 | CTCF-RA | 1618..2457 | 856..17 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CTCF-RA | 2892 | CG8591-RA | 1753..2592 | 856..17 | 4200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:15:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7354041..7354779 | 118..856 | 3695 | 100 | Plus |
| 3L | 28110227 | 3L | 7353878..7353981 | 17..120 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:15:48 has no hits.
BS01313.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:25 Download gff for
BS01313.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-PA | 1618..2457 | 17..856 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:00 Download gff for
BS01313.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8591-PA | 1618..2457 | 17..856 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:16:24 Download gff for
BS01313.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-RA | 1753..2595 | 12..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:55:31 Download gff for
BS01313.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-RA | 1753..2595 | 12..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:55:31 Download gff for
BS01313.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7353875..7353979 | 12..118 | 97 | <- | Plus |
| 3L | 7354042..7354779 | 119..856 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:16:24 Download gff for
BS01313.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7346975..7347079 | 12..118 | 97 | <- | Plus |
| arm_3L | 7347142..7347879 | 119..856 | 100 | | Plus |
BS01313.5prime Sequence
869 bp (738 high quality bases) assembled on 2005-11-29
> BS01313.5prime
GAAGTTATCAGTCGACATGCCAAGGAGGACAAAAAAGGACGAGGACCCCG
AGGATCTGCAGACCTTCCTCAACAATTTCCATAAGGAGATCGAAGGCAAC
AGCGATGAGAAGGTGGTAAACACGATTTTGGAGGCCATCAGCGCCGAGGC
CATCGACTTGGATGAAAATGGTGCGGAGGCTGGTGGATCGAAACCGATGG
AGGAGGCGGAGGCTGATTTGGATCATGCGGAGGAAGCGGAGGAGGAGGAG
GAGGACGACGAGGATAAGTATTTCATAGATGACGAGGGCAACTGCTATAT
CAAGACTACGCCCAAGAAGCAAAAGGAGCTACAAAAGAAGCTCAAACAGG
CGGCTGCCAAGCCGGGGAAAGCTACACGTTCCGTGGTCAGTACAGCCACC
AATAAATCCATCAATTTGCGGCCAGCCAAATCGACACCGAAAGCGACTAC
TTCGAAGCCTCCCCCAGAACCCAAGGCAATTAGCGTTCGACCAGCCCGAG
CAGCTGCAGCCAAGGCGAAGCAATCGGCGATGCCACCGCCACCGGCATTA
GTGGTCAAAGTACCGGCACCCAGGGGCAGGCCTAGAAAGAACCCTGTCAT
ACCGAAGCCTGAACCCATGGACTTGGAGCGGGAGCTCGAGGAGCTGGTAG
ATGAGCCCGACATCAGTTCAATGGTGACAGAATTGTCGGACTATACCGTA
GACGAAGCTGCCGTAGAGGCAGCAACAGCTACGCTGACGCCAAACGAGGC
TGAGGTCTACGAATTTGAGGACAATGCGACGACAGAGGATGAGAAATGCC
GACAGAAGGACGTAGACTTTGTGCTAAGCAACANGGAGGTGAAGCTGAAG
ACAGCTTCTTCTACCAGCC
BS01313.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8591-PA | 2457 | CTCF-RA | 1..779 | 17..795 | 3895 | 100 | Plus |
| CG8591-PA | 2457 | CTCF-RA | 788..853 | 804..869 | 311 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CTCF-RA | 2892 | CG8591-RA | 136..988 | 17..869 | 4209 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7355544..7356005 | 869..408 | 2204 | 99.4 | Minus |
| 3L | 28110227 | 3L | 7356067..7356457 | 407..17 | 1955 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:12:15 has no hits.
BS01313.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:26 Download gff for
BS01313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:01 Download gff for
BS01313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8591-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:17:29 Download gff for
BS01313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-RA | 130..988 | 11..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:23:56 Download gff for
BS01313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-RA | 130..988 | 11..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:23:56 Download gff for
BS01313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7355544..7356005 | 408..869 | 99 | <- | Minus |
| 3L | 7356067..7356463 | 7..407 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:17:29 Download gff for
BS01313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7348644..7349105 | 408..869 | 99 | <- | Minus |
| arm_3L | 7349167..7349563 | 7..407 | 99 | | Minus |
BS01313.complete Sequence
2489 bp assembled on 2007-08-15
GenBank Submission: FJ638765
> BS01313.complete
GAAGTTATCAGTCGACATGCCAAGGAGGACAAAAAAGGACGAGGACCCCG
AGGATCTGCAGACCTTCCTCAACAATTTCCATAAGGAGATCGAAGGCAAC
AGCGATGAGAAGGTGGTAAACACGATTTTGGAGGCCATCAGCGCCGAGGC
CATCGACTTGGATGAAAATGGTGCGGAGGCTGGTGGATCGAAACCGATGG
AGGAGGCGGAGGCTGATTTGGATCATGCGGAGGAAGCGGAGGAGGAGGAG
GAGGACGACGAGGATAAGTATTTCATAGATGACGAGGGCAACTGCTATAT
CAAGACTACGCCCAAGAAGCAAAAGGAGCTACAAAAGAAGCTCAAACAGG
CGGCTGCCAAGCCGGGGAAAGCTACACGTTCCGTGGTCAGTACAGCCACC
AATAAATCCATCAATTTGCGGCCAGCCAAATCGACACCGAAAGCGACTAC
TTCGAAGCCTCCCCCAGAACCCAAGGCAATTAGCGTTCGACCAGCCCGAG
CAGCTGCAGCCAAGGCGAAGCAATCGGCGATGCCACCGCCACCGGCATTA
GTGGTCAAAGTACCGGCACCCAGGGGCAGGCCTAGAAAGAACCCTGTCAT
ACCGAAGCCTGAACCCATGGACTTGGAGCGGGAGCTCGAGGAGCTGGTAG
ATGAGCCCGACATCAGTTCAATGGTGACAGAATTGTCGGACTATACCGTA
GACGAAGCTGCCGTAGAGGCAGCAACAGCTACGCTGACGCCAAACGAGGC
TGAGGTCTACGAATTTGAGGACAATGCGACGACAGAGGATGAGAATGCCG
ACAAGAAGGACGTAGACTTTGTGCTAAGCAACAAGGAGGTGAAGCTGAAG
ACAGCTTCTTCTACCAGCCAGAATTCGAATGCATCGGGACATAAGTACTC
ATGCCCACACTGCCCGTATACGGCGAGCAAGAAGTTTCTGATCACGCGCC
ACTCACGAAGTCATGACGTCGAGCCATCCTTCAAGTGCTCCATCTGCGAG
AGGTCCTTTCGATCGAACGTGGGCCTGCAAAACCACATAAACACGCACAT
GGGCAATAAGCCGCACAAGTGCAAGCTCTGCGAAAGCGCCTTCACCACCA
GCGGCGAGCTGGTCCGTCACACTCGCTACAAGCACACTAAGGAAAAACCG
CACAAGTGCACGGAGTGCACATACGCCAGCGTGGAACTGACCAAACTGCG
CCGCCACATGACCTGCCATACGGGCGAGAGACCATATCAATGTCCGCACT
GCACCTACGCATCGCAGGACATGTTCAAGCTGAAGCGACACATGGTTATC
CACACCGGCGAGAAGAAGTACCAATGCGACATCTGCAAGTCGCGATTTAC
GCAATCTAACTCACTAAAGGCCCACAAGCTCATCCACAGCGTGGTCGACA
AGCCCGTCTTTCAGTGCAACTACTGCCCGACGACTTGCGGTCGGAAGGCT
GACCTGCGCGTTCACATTAAACACATGCACACCTCTGATGTGCCAATGAC
ATGCCGGCGCTGTGGCCAGCAGCTGCCCGATCGCTATCAATACAAGCTGC
ACGTTAAGTCACACGAGGGCGAAAAGTGTTACAGCTGCAAGCTGTGCAGC
TACGCTTCGGTCACCCAACGCCATTTGGCCTCACACATGCTCATCCACCT
GGACGAAAAGCCGTTCCATTGCGATCAGTGCCCGCAGGCCTTCCGGCAGC
GTCAATTGCTGCGCCGCCATATGAATCTCGTGCACAACGAAGAGTATCAG
CCACCAGAACCGCGCGAGAAACTGCACAAGTGTCCGAGTTGTCCGCGGGA
GTTTACCCACAAGGGTAATCTAATGAGACACATGGAGACTCACGATGATT
CGGCGAATGCTCGCGAAAAGCGGCGTCGCCTTAAATTGGGCCGCAATGTG
CGGCTGCAGAAAGATGGCACTGTCATCACGTTGATCAAGGATCAGTATGT
GGATATGGACCGGGACCAGGAGGAAAACGAAGAGGATGACAACCCAGAGA
GCTATGACTTGGCTGAAATCGAGCCGGAGAACTCGGAGGCTGAAGACGCC
GATGATGATGTGGAAACCATAGTCAGTGATCCGATCCGTCAGAGAATCAA
GCCAGCACCTATCATTATCAACAAACAGGCCAGGCTTGCCGCCTCCGAAA
AGCAGCCGATGATCATCAATCAACGCCTCCGAAGTCAACGGGGCACCAAG
ACGTTCCACATCAAGGAGGAGCCGGACAACTCGGACTTCACCGTGGAATG
GCAAGGGGATGATGGCGAGGTAATGGTCGTAGAGCTGGTTAATGGCGACG
AGGAGGTGTTGGTCAAGCACGAACCGAGCGCCAACTCCAAGATCAGTGCC
AAAAACTGCTTTGGTTTCGAGGACGACGATGATTATGAGGAGTATGGCGA
TGGGGAAAACGAGGTCGATGGCGCTTCCCAGGAGTTTCTGCAGCTGATGG
ATATGATTGAGCAGGACTCTTAGAAGCTTTCTAGACCAT
BS01313.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CTCF-RA | 2457 | CG8591-PA | 1..2457 | 17..2473 | 12285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CTCF-RA | 2892 | CG8591-RA | 136..2592 | 17..2473 | 12285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7354041..7356005 | 2372..408 | 9825 | 100 | Minus |
| 3L | 28110227 | 3L | 7356067..7356457 | 407..17 | 1955 | 100 | Minus |
| 3L | 28110227 | 3L | 7353878..7353981 | 2473..2370 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:37:12 has no hits.
BS01313.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:14 Download gff for
BS01313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-RA | 1..2457 | 17..2473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:50:47 Download gff for
BS01313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-RA | 113..2578 | 11..2478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:08 Download gff for
BS01313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-RA | 136..2592 | 17..2473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:15 Download gff for
BS01313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-RA | 113..2578 | 11..2478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:02 Download gff for
BS01313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-RA | 136..2592 | 17..2473 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:02 Download gff for
BS01313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7353878..7353979 | 2372..2473 | 100 | <- | Minus |
| 3L | 7354042..7356005 | 408..2371 | 100 | <- | Minus |
| 3L | 7356067..7356457 | 17..407 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:08 Download gff for
BS01313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7346978..7347079 | 2372..2473 | 100 | <- | Minus |
| arm_3L | 7349167..7349557 | 17..407 | 100 | | Minus |
| arm_3L | 7347142..7349105 | 408..2371 | 100 | <- | Minus |
BS01313.pep Sequence
Translation from 16 to 2472
> BS01313.pep
MPRRTKKDEDPEDLQTFLNNFHKEIEGNSDEKVVNTILEAISAEAIDLDE
NGAEAGGSKPMEEAEADLDHAEEAEEEEEDDEDKYFIDDEGNCYIKTTPK
KQKELQKKLKQAAAKPGKATRSVVSTATNKSINLRPAKSTPKATTSKPPP
EPKAISVRPARAAAAKAKQSAMPPPPALVVKVPAPRGRPRKNPVIPKPEP
MDLERELEELVDEPDISSMVTELSDYTVDEAAVEAATATLTPNEAEVYEF
EDNATTEDENADKKDVDFVLSNKEVKLKTASSTSQNSNASGHKYSCPHCP
YTASKKFLITRHSRSHDVEPSFKCSICERSFRSNVGLQNHINTHMGNKPH
KCKLCESAFTTSGELVRHTRYKHTKEKPHKCTECTYASVELTKLRRHMTC
HTGERPYQCPHCTYASQDMFKLKRHMVIHTGEKKYQCDICKSRFTQSNSL
KAHKLIHSVVDKPVFQCNYCPTTCGRKADLRVHIKHMHTSDVPMTCRRCG
QQLPDRYQYKLHVKSHEGEKCYSCKLCSYASVTQRHLASHMLIHLDEKPF
HCDQCPQAFRQRQLLRRHMNLVHNEEYQPPEPREKLHKCPSCPREFTHKG
NLMRHMETHDDSANAREKRRRLKLGRNVRLQKDGTVITLIKDQYVDMDRD
QEENEEDDNPESYDLAEIEPENSEAEDADDDVETIVSDPIRQRIKPAPII
INKQARLAASEKQPMIINQRLRSQRGTKTFHIKEEPDNSDFTVEWQGDDG
EVMVVELVNGDEEVLVKHEPSANSKISAKNCFGFEDDDDYEEYGDGENEV
DGASQEFLQLMDMIEQDS*
BS01313.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CTCF-PA | 818 | CG8591-PA | 1..818 | 1..818 | 4365 | 100 | Plus |
| crol-PC | 756 | CG14938-PC | 239..536 | 294..593 | 528 | 35.5 | Plus |
| crol-PG | 878 | CG14938-PG | 361..658 | 294..593 | 528 | 35.5 | Plus |
| Meics-PB | 571 | CG8474-PB | 112..540 | 188..609 | 527 | 30.1 | Plus |
| Meics-PA | 583 | CG8474-PA | 143..552 | 202..609 | 522 | 29.5 | Plus |
| crol-PC | 756 | CG14938-PC | 170..490 | 279..609 | 507 | 31.6 | Plus |
| Meics-PA | 583 | CG8474-PA | 288..580 | 282..574 | 399 | 28.2 | Plus |
| Meics-PB | 571 | CG8474-PB | 315..568 | 291..574 | 389 | 30.6 | Plus |
| Meics-PB | 571 | CG8474-PB | 225..481 | 347..612 | 351 | 29.6 | Plus |
| Meics-PA | 583 | CG8474-PA | 237..493 | 347..612 | 351 | 29.6 | Plus |
| crol-PC | 756 | CG14938-PC | 344..514 | 285..453 | 259 | 31.2 | Plus |
| Meics-PB | 571 | CG8474-PB | 399..569 | 293..459 | 245 | 30.2 | Plus |
| Meics-PA | 583 | CG8474-PA | 411..581 | 293..459 | 245 | 30.2 | Plus |
