Clone Sequence Records
BS01319.3prime Sequence
917 bp (815 high quality bases) assembled on 2005-11-29
> BS01319.3prime
ATGGTCTAGAAAGCTTCTAGTTCAGCAACAGCTGAGCAACAATGCTGTTG
TCATCCGCCGGATTGGCAGAATGGAGGCCAGATCCGCTCTCGAGGAACTC
GCGCAGTTCGTTCTCCAGATCTCCACCGCCATGCTGTTCATCAGACTCGT
CGATCTCCATGGCCACAGGTTGCAACTGTGGCAGGGCCACCGGCTGTTGG
AGCAGCTCAGGCAGCTGGACGCGCGGAGAGACGGGTCGAGGTGGCGGCAA
GCCAGCATAGGACATGCCCATAGCTTTTCGCAAGGCATAGGGATCGGCGA
TGGCGGAAGGCGGCAACTTCTTAGCCAAATCGCTGATCTGCTGCGTCAAT
TGCTGGGCGGTTTGGATCTCCTCCTGACCGGCGGGCTGCACCAGACCCAG
GTGATTCGGCAAAGGCTGTGACAAACGATCGTGCTGCGCCACTCGCAGCT
TCTCGATTAGCGTCAAGTTTTGACTAAGATGCTCGTGCATGCGCCGATTA
AGCTCGTAGCTCTTCATTTCAGCCTCCATGCCGTCTAGGAAGCTCACATC
GATGCCAAGTTCACCAAGAGACTGCAATCCCTTGAAGTCCACATGTGTGT
TTTTGTATTTTTCATATTCTTGCTCAATTTGGGCGGTGGTTTCCTGCTGG
CTGGAAGTTTCCTCCTCCTGTTCAAAACACTTTTCAATCTCACGCTGCTC
GTATGAATGAAGCTGCATGTTGTATAGTTCATCCAGGGATTTACTGTGCT
CTCCGTTGGTAAGAATATCCAGCAAACCATTTGCAATTGTGGTCCCGTAG
TTAGAGTCTTTGGTGAAATTGTAGATGCTCTCCGCATATTCCGCACTGGA
GGCATCTCCATACGTACGCAAAACAATTTGCGTTTTCTCGGCACTCAGCG
TGGAAAAGCGCGAATCA
BS01319.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7154-PA | 2586 | CG7154-RA | 1786..2586 | 817..17 | 4005 | 100 | Minus |
| CG7154-PA | 2586 | CG7154-RA | 1686..1780 | 917..823 | 375 | 95.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7154-RA | 2834 | CG7154-RA | 1812..2712 | 917..17 | 4400 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:31:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7784979..7785640 | 917..256 | 3190 | 98.8 | Minus |
| 2L | 23513712 | 2L | 7785700..7785939 | 256..17 | 1200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:31:54 has no hits.
BS01319.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:35 Download gff for
BS01319.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-PA | 1687..2586 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:12 Download gff for
BS01319.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-PA | 1687..2586 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:15:02 Download gff for
BS01319.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-RA | 1813..2715 | 14..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:47:01 Download gff for
BS01319.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-RA | 1813..2715 | 14..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:47:01 Download gff for
BS01319.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7784980..7785640 | 256..916 | 99 | -> | Minus |
| 2L | 7785701..7785942 | 14..255 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:15:02 Download gff for
BS01319.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7784980..7785640 | 256..916 | 99 | -> | Minus |
| arm_2L | 7785701..7785942 | 14..255 | 99 | | Minus |
BS01319.5prime Sequence
875 bp (811 high quality bases) assembled on 2005-11-29
> BS01319.5prime
GAAGTTATCAGTCGACATGGGCTCCTCCAAGAAGCACAAGAAAAACAAGT
CGGAGCGACGCGAGAAATATGAAGAATACAGTCAGCACCAGGACCCGGCT
CAGCTGCAACGAGGTCTAAAGCTTATCCTTAAGGTGGGCTCGAATGCCAC
GCCGGAGTACAGTGCCAATTCGCCAATGGTGGACGGAGGACCGCCCACAG
CAGCCGAGGCCATGATGTCGCCAGTCCCCGAGGAACTTCAAGATCACCAG
GGTCATCGCGAGCGCCACAAAAAGTCAAAGAAAAAAAAGAAGAAGAAGGA
TCGCGAGAAGAAGCACAAACACCACAAGGAGAAACGGCACAGGAGCAGAG
ATAGACATCGGGACGCTGGATCGGACGAAGATATGATGGCCGGCGCTGAC
GATGCCGCTTGCAGTGGATTCGCCCCATCGTCTGTCGCTCCACCGGCCGC
CGATCCCGATTCCAGCCAAGATGGATTTAGCTTTATGGACGATGATCAAT
CACAACCGCTGCCAGAGAATATTTTGTTCTTCGCCGGCATCACCACGGAT
AACTCGCCATCAAACTGCCCCGTAACAAAGCCAATAGCTCCACGCAAGCT
GGATGATATTCTGATGGGCTCTTCGCCCAACTCGTCGTCGTTGCAATCTT
CCTCCCTGGGTTTAATAGGCAGCAGTCCCACCAAGCCACTGCCCGACCTT
TTAATACCTTCACCGTCGACGCCAGGAGGAGCCAACTCCCTTAATGCCCT
TACACCGAAGGCTCTCGAGGCGCCAAAGACGCCCAGTAGTTCCAGTGAGT
CGGGTAGAGAGCCACGGAGCTGTGTGCTCAAGCTAAAGCAGCAGAAATCG
CCCGTAAAACAACTTCTGGAGCACC
BS01319.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7154-PA | 2586 | CG7154-RA | 1..836 | 17..852 | 4180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7154-RA | 2834 | CG7154-RA | 127..985 | 17..875 | 4235 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7783297..7783921 | 73..697 | 3125 | 100 | Plus |
| 2L | 23513712 | 2L | 7783975..7784152 | 698..875 | 830 | 97.8 | Plus |
| 2L | 23513712 | 2L | 7782991..7783048 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:05:51 has no hits.
BS01319.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:37 Download gff for
BS01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:13 Download gff for
BS01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:40:08 Download gff for
BS01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-RA | 127..985 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:19 Download gff for
BS01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-RA | 127..985 | 17..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:19 Download gff for
BS01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7782991..7783048 | 17..74 | 100 | -> | Plus |
| 2L | 7783299..7783921 | 75..697 | 100 | -> | Plus |
| 2L | 7783975..7784152 | 698..875 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:40:08 Download gff for
BS01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7782991..7783048 | 17..74 | 100 | -> | Plus |
| arm_2L | 7783299..7783921 | 75..697 | 100 | -> | Plus |
| arm_2L | 7783975..7784152 | 698..875 | 98 | | Plus |
BS01319.complete Sequence
2618 bp (2618 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634597
> BS01319.complete
GAAGTTATCAGTCGACATGGGCTCCTCCAAGAAGCACAAGAAAAACAAGT
CGGAGCGACGCGAGAAATATGAAGAATACAGTCAGCACCAGGACCCGGCT
CAGCTGCAACGAGGTCTAAAGCTTATCCTTAAGGTGGGCTCGAATGCCAC
GCCGGAGTACAGTGCCAATTCGCCAATGGTGGACGGAGGACCGCCCACAG
CAGCCGAGGCCATGATGTCGCCAGTCCCCGAGGAACTTCAAGATCACCAG
GGTCATCGCGAGCGCCACAAAAAGTCAAAGAAAAAAAAGAAGAAGAAGGA
TCGCGAGAAGAAGCACAAACACCACAAGGAGAAACGGCACAGGAGCAGAG
ATAGACATCGGGACGCTGGATCGGACGAAGATATGATGGCCGGCGCTGAC
GATGCCGCTTGCAGTGGATTCGCCCCATCGTCTGTCGCTCCACCGGCCGC
CGATCCCGATTCCAGCCAAGATGGATTTAGCTTTATGGACGATGATCAAT
CACAACCGCTGCCAGAGAATATTTTGTTCTTCGCCGGCATCACCACGGAT
AACTCGCCATCAAACTGCCCCGTAACAAAGCCAATAGCTCCACGCAAGCT
GGATGATATTCTGATGGGCTCTTCGCCCAACTCGTCGTCGTTGCAATCTT
CCTCCCTGGGTTTAATAGGCAGCAGTCCCACCAAGCCACTGCCCGACCTT
TTAATACCTTCACCGTCGACGCCAGGAGGAGCCAACTCCCTTAATGCCCT
TACACCGAAGGCTCTCGAGGCGCCAAAGACGCCCAGTAGTTCCAGTGAGT
CGGGTAGAGAGCCACGGAGCTGTGTGCTCAAGCTAAAGCAGCAGAAATCG
CCGTTAAACAAACTTCTGGAGCACCTGTTGCGCTTCCTGGAGAAGCGGGA
TCCCCATCAGTTCTTCGCTTGGCCGGTGACCGATGACATGGCGCCCGGTT
ACTCTTCAATAATCAGCAGACCCATGGACTTCTCCACTATGCGACAGAAA
ATTGATGATCACGAGTATACCGCTTTAACCGAGTTCACTGATGACTTTAA
GCTGATGTGCGAAAATGCCATCAAGTACAACCACGTGGATACGGTTTATA
ACAAGGCAGCTAAACGTCTACTCCAAGTTGGAATGAAACATCTGCAACCT
GAGAACCTCATGAGAAGCCTGAAACCACTATCTGGTTATATGAGGGAGCT
TACAGCCAGAGAACTTGGCTTTGAGTTAAGTTCGAACGATATGTCAAGGG
AAAATAACGATTCGGCGGATGAAGGAGCTTCAACGGGAGCGGAAGAGCCA
CGCACTCCCGCTCAGCTGGAGGAGGAGGAGCGTAAGCGAACACTTCGTTT
GGAGAATGCACCCAAAACACATTTCGAGCCTTATGTAGACGATTTAACGG
GCGAAGAGATCCTGGCGCAAGTGCAAAATGCTGCGCAACAGGCCAAACAA
AGAGTGAACGCCAAGAAAAATGCCCACAAGATGGGTTTCCTGCGTCAAAT
GAAGGATGGCACCACCACCCTGAATCTGGTGATCAAAGAGGAAAACGAGG
GTCCTGAAAGGGTAGTAACAATTGGTGATCTAGTTGGCAAACTGCAAAAG
GGAAGCGCACAGCTACAGACGCGACAGGTTGACAAAAGGAATGCCGTGCG
GACAGTGAAATCCTTAAACTACGGAGCATTTGCCAGCTTTGCGCCCACCT
TTGATTCGCGCTTTTCCACGCTGAGTGCCGAAGAAACGCAATTGGTTTTG
CGTACGTATGGAGATGCCTCCAGTGCGGAATATGCGGAGAGCATCTTACA
ATTCACCAAAGACTCTAACTACGGGACCACAATTGCAAATGGTTTGCTGG
ATATTCTTACCAACGGAGAGCACAGTAAATCCCTGGATGAACTATACAAC
ATGCAGCTTCATTCATACGAGCAGCGTGAGATTGAAAAGTGTTTTGAACA
GGAGGAGGAAACTTCCAGCCAGCAGGAAACCACCGCCCAAATTGAGCAAG
AATATGAAAAATACAAAAACACACATGTGGACTTCAAGGGATTGCAGTCT
CTTGGTGAACTTGGCATCGATGTGAGCTTCCTAGACGGCATGGAGGCTGA
AATGAAGAGCTACGAGCTTAATCGGCGCATGCACGAGCATCTTAGTCAAA
ACTTGACGCTAATCGAGAAGCTGCGAGTGGCGCAGCACGATCGTTTGTCA
CAGCCTTTGCCGAATCACCTGGGTCTGGTGCAGCCCGCCGGTCAGGAGGA
GATCCAAACCGCCCAGCAATTGACGCAGCAGATCAGCGATTTGGCTAAGA
AGTTGCCGCCTTCCGCCATCGCCGATCCCTATGCCTTGCGAAAAGCTATG
GGCATGTCCTATGCTGGCTTGCCGCCACCTCGACCCGTCTCTCCGCGCGT
CCAGCTGCCTGAGCTGCTCCAACAGCCGGTGGCCCTGCCACAGTTGCAAC
CTGTGGCCATGGAGATCGACGAGTCTGATGAACAGCATGGCGGTGGAGAT
CTGGAGAACGAACTGCGCGAGTTCCTCGAGAGCGGATCTGGCCTCCATTC
TGCCAATCCGGCGGATGACAACAGCATTGTTGCTCAGCTGTTGCTGAACT
AGAAGCTTTCTAGACCAT
BS01319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7154-RA | 2586 | CG7154-PA | 1..2586 | 17..2602 | 12930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7154-RA | 2834 | CG7154-RA | 127..2712 | 17..2602 | 12930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7783975..7785640 | 698..2363 | 8330 | 100 | Plus |
| 2L | 23513712 | 2L | 7783297..7783921 | 73..697 | 3125 | 100 | Plus |
| 2L | 23513712 | 2L | 7785700..7785939 | 2363..2602 | 1200 | 100 | Plus |
| 2L | 23513712 | 2L | 7782991..7783048 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:44:38 has no hits.
BS01319.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:22 Download gff for
BS01319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-RA | 1..2586 | 17..2602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:22 Download gff for
BS01319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-RA | 135..2723 | 17..2605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:43 Download gff for
BS01319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-RA | 127..2712 | 17..2602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:22 Download gff for
BS01319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-RA | 135..2723 | 17..2605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:11 Download gff for
BS01319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-RA | 127..2712 | 17..2602 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:11 Download gff for
BS01319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7782991..7783048 | 17..74 | 100 | -> | Plus |
| 2L | 7783299..7783921 | 75..697 | 100 | -> | Plus |
| 2L | 7783975..7785640 | 698..2363 | 100 | -> | Plus |
| 2L | 7785701..7785939 | 2364..2602 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:43 Download gff for
BS01319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7782991..7783048 | 17..74 | 100 | -> | Plus |
| arm_2L | 7783299..7783921 | 75..697 | 100 | -> | Plus |
| arm_2L | 7783975..7785640 | 698..2363 | 100 | -> | Plus |
| arm_2L | 7785701..7785939 | 2364..2602 | 100 | | Plus |
BS01319.pep Sequence
Translation from 16 to 2601
> BS01319.pep
MGSSKKHKKNKSERREKYEEYSQHQDPAQLQRGLKLILKVGSNATPEYSA
NSPMVDGGPPTAAEAMMSPVPEELQDHQGHRERHKKSKKKKKKKDREKKH
KHHKEKRHRSRDRHRDAGSDEDMMAGADDAACSGFAPSSVAPPAADPDSS
QDGFSFMDDDQSQPLPENILFFAGITTDNSPSNCPVTKPIAPRKLDDILM
GSSPNSSSLQSSSLGLIGSSPTKPLPDLLIPSPSTPGGANSLNALTPKAL
EAPKTPSSSSESGREPRSCVLKLKQQKSPLNKLLEHLLRFLEKRDPHQFF
AWPVTDDMAPGYSSIISRPMDFSTMRQKIDDHEYTALTEFTDDFKLMCEN
AIKYNHVDTVYNKAAKRLLQVGMKHLQPENLMRSLKPLSGYMRELTAREL
GFELSSNDMSRENNDSADEGASTGAEEPRTPAQLEEEERKRTLRLENAPK
THFEPYVDDLTGEEILAQVQNAAQQAKQRVNAKKNAHKMGFLRQMKDGTT
TLNLVIKEENEGPERVVTIGDLVGKLQKGSAQLQTRQVDKRNAVRTVKSL
NYGAFASFAPTFDSRFSTLSAEETQLVLRTYGDASSAEYAESILQFTKDS
NYGTTIANGLLDILTNGEHSKSLDELYNMQLHSYEQREIEKCFEQEEETS
SQQETTAQIEQEYEKYKNTHVDFKGLQSLGELGIDVSFLDGMEAEMKSYE
LNRRMHEHLSQNLTLIEKLRVAQHDRLSQPLPNHLGLVQPAGQEEIQTAQ
QLTQQISDLAKKLPPSAIADPYALRKAMGMSYAGLPPPRPVSPRVQLPEL
LQQPVALPQLQPVAMEIDESDEQHGGGDLENELREFLESGSGLHSANPAD
DNSIVAQLLLN*
BS01319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7154-PA | 861 | CG7154-PA | 1..861 | 1..861 | 4434 | 100 | Plus |
| Br140-PB | 1430 | CG1845-PB | 612..704 | 276..368 | 187 | 40.9 | Plus |
| Br140-PA | 1430 | CG1845-PA | 612..704 | 276..368 | 187 | 40.9 | Plus |
