Clone Sequence Records
BS01321.3prime Sequence
910 bp (839 high quality bases) assembled on 2005-11-29
> BS01321.3prime
ATGGTCTAGAAAGCTTTTAAATGAACTGCGGGAAGTCCAGCATGTCGAAG
CTGTTGTCAAATTCGGGCTGCAAATGGAAATTAGCCGGGGGCTGTGGGCT
TTTGCATTGCGGCTCGTAGACATCCGTCAGATACTTTGTCACGTACTCGA
ACGACACAAACTCGCTCAAGTGGCATTTGCTGTCACCATTGGCGCGGCCA
TTATTGTTGGCCAGGCTAATTCCATTAGCAGATGCGGCTGGCGTACCTGT
GGGCTTCGCCGTCGTCAGCAATTGCTCGAGTTCGCTTAATTGATTAATAT
TCGCATTGTAACGGTTATTGTTGCTGTTACTGTTACTGCTGCCGCCACCG
CTGCAAACGCTCAGCACTTCCGTTTCCGGTGCGGGCGCCATGTTGCCATT
GCCATATGTTGCTGTTGCCGTTGTTGTTGCTGTTGCGGTTGCCAGTGTTG
CAGGTCCTGCAGGACCTCCGCTCTGATTGTGCTCGATGATGACAATGCAA
TTTGACAACTCATTAAAGTTCATTGAATTGTTATTAGCTGCAACACCGGT
GCCGCAATTGCTGCGGTCTGTCGTCCTTTCGTTTTCTGGCTGATGCTGCT
TCTGCTGCTGCTGCTGCTGTTGCTGCTGCTGTTGATGCTGCTGCAGCAGC
AATGCCTCGCTGCAACTATTGCTGCGGTGTTGTCGCTGATCCCCCGGAGC
ACTTGGCACGGCCACGCCCACGCCCGCACCCACGCCCCTTTGCACCAGTG
CCGACTCGGAGTGACGGCGTGTTTTGGCCGCCTTCTTTGGACCGGAGGGC
GGTACGGAAGCGCCGCCGGCAGATTTGCGGCGCAGCTGTCCGNTGGCGTT
GCGCAGCGCGTGGTTCTTGACATGTTTGCGGAAGCTGGAGGGATCCGTGT
AGCGCTTGGT
BS01321.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4677-PB | 2601 | lmd-RB | 1708..2601 | 910..17 | 4426 | 99.7 | Minus |
| CG4677-PA | 2079 | lmd-RA | 1645..1975 | 910..580 | 1611 | 99.3 | Minus |
| CG4677-PA | 2079 | lmd-RA | 1975..2079 | 465..361 | 525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lmd-RC | 1579 | CG4677-RC | 352..1245 | 910..17 | 4444 | 99.8 | Minus |
| lmd-RB | 3197 | CG4677-RB | 1970..2863 | 910..17 | 4444 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23021556..23022449 | 17..910 | 4444 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-06 15:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6906 | 462..307 | 232 | 65 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6526..6847 | 640..312 | 214 | 58.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2563 | 436..164 | 143 | 55.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2408 | 419..306 | 142 | 63.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6892 | 354..220 | 111 | 55.6 | Minus |
BS01321.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:38 Download gff for
BS01321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lmd-PB | 1708..2601 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:15 Download gff for
BS01321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4677-PB | 1708..2601 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:17:30 Download gff for
BS01321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lmd-RB | 1970..2866 | 11..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:02:51 Download gff for
BS01321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lmd-RB | 1970..2866 | 11..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:02:51 Download gff for
BS01321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23021548..23022449 | 11..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:17:30 Download gff for
BS01321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18847270..18848171 | 11..910 | 99 | | Plus |
BS01321.5prime Sequence
829 bp (772 high quality bases) assembled on 2005-11-29
> BS01321.5prime
GAAGTTATCAGTCGACATGTCATCCTCGCTGAAGACCAGCCAAAGTGGCG
GCATGTACGTCAAGACGTCGTCGATTTCGGGTATTTCGTCGATTTCTGGC
AAGGAGGCGGCCAGTTGCTACGGCGGATTTATGTCGCCTCCGCTGAGTGC
CAATATAACGGCCAATAATGGGGAGCGGGAAATGTTCCGTGTGCCGGGAG
CCAAGGTGGAAACGAATGAAAGTTACGCCTGCGGTGAGCTGCAGTTTCCG
GACTTTTCACACCTCTGCTTTGCCGCCGAGACACCGAACTCCGTGTTCAG
CGACTGTCACAACTATGCTGGCCAGGATCAGCAGCAGGATTCGGATCAGG
ATGACATTGTCTGCGCAGCGGCGGAAAATACGGGCATGCCCTATCAGCAG
GGACAGTACACGCAACTGAATCGCGAGGATATCTTCCGCTTCGAACCGGA
GGACATAGCGCGTCTGACTGGCGAGTCCGAACTGCCCGGCATGTTGCAAC
ATCCACAGACGCCATATACCCCATATACCCCTTACACACCCTACACACCG
TGCAGTGCACAGAATAGTCAGTATGCCGTGCAGCCGGCGAATGACTCCAT
TAATCTGGATATCGATTATTTTAATTACGACGAGATTAATTGCCAATCGA
AAAACCAGTCACCGTGCTCATCACCGCACCTCGACGCCTGGCTGAACTTC
AATCTCGGCGAGATTTCAGCGGCCGCATCATCGAGTGCCGCATCCCCGAA
GTTGGGCAATGTGTTCGAGGAGCANGTCAAAGAGGAGGCCTCGCCGGCGA
AACTGCCATCGATGAACTCCACCTTCGGC
BS01321.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4677-PB | 2601 | lmd-RB | 1..813 | 17..829 | 4046 | 99.8 | Plus |
| CG4677-PA | 2079 | lmd-RA | 1..476 | 17..492 | 2380 | 100 | Plus |
| CG4677-PA | 2079 | lmd-RA | 477..750 | 556..829 | 1351 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lmd-RB | 3197 | CG4677-RB | 263..1075 | 17..829 | 4054 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23025639..23026451 | 829..17 | 4054 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-04 04:17:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 1766..1810 | 282..237 | 110 | 73.9 | Minus |
BS01321.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:39 Download gff for
BS01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lmd-PB | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:16 Download gff for
BS01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4677-PB | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:09:34 Download gff for
BS01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lmd-RB | 263..1075 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:50:47 Download gff for
BS01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lmd-RB | 263..1075 | 17..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:50:47 Download gff for
BS01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23025639..23026451 | 17..829 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:09:34 Download gff for
BS01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18851361..18852173 | 17..829 | 99 | | Minus |
BS01321.complete Sequence
2633 bp assembled on 2009-02-12
> BS01321.complete
GAAGTTATCAGTCGACATGTCATCCTCGCTGAAGACCAGCCAAAGTGGCG
GCATGTACGTCAAGACGTCGTCGATTTCGGGTATTTCGTCGATTTCTGGC
AAGGAGGCGGCCAGTTGCTACGGCGGATTTATGTCGCCTCCGCTGAGTGC
CAATATAACGGCCAATAATGGGGAGCGGGAAATGTTCCGTGTGCCGGGAG
CCAAGGTGGAAACGAATGAAAGTTACGCCTGCGGTGAGCTGCAGTTTCCG
GACTTTTCACACCTCTGCTTTGCCGCCGAGACACCGAACTCCGTGTTCAG
CGACTGTCACAACTATGCTGGCCAGGATCAGCAGCAGGATTCGGATCAGG
ATGACATTGTCTGCGCAGCGGCGGAAAATACGGGCATGCCCTATCAGCAG
GGACAGTACACGCAACTGAATCGCGAGGATATCTTCCGCTTCGAACCGGA
GGACATAGCGCGTCTGACTGGCGAGTCCGAACTGCCCGGCATGTTGCAAC
ATCCACAGACGCCATATACCCCATATACCCCTTACACACCCTACACACCG
TGCAGTGCACAGAATAGTCAGTATGCCGTGCAGCCGGCGAATGACTCCAT
TAATCTGGATATCGATTATTTTAATTACGACGAGATTAATTGCCAATCGA
AAAACCAGTCACCGTGCTCATCACCGCACCTCGACGCCTGGCTGAACTTC
AATCTCGGCGAGATTTCAGCGGCCGCATCATCGAGTGCCGCATCCCCGAA
GTTGGGCAATGTGTTCGAGGAGCAGGTCAAAGAGGAGGCCTCGCCGGCGA
AACTGCCATCGATGAACTCCACCTTCGGCACTCCCAAATGCATTCCCATG
TGCGCCAGCAACTACGAGGATTACGCGAATCTCTACCAACAGGGATCGGG
GTATTCCACGGAGAACTACCACAACAATATGGCTCAGGTCGTCGAGAAGC
CCAATCGCGAGCACAAGGCCATCTGGACCATCGATGAACTGGATGAACTG
ATGTTGGGCGAGCAGCAGCAGTTCCTTCAGCATCATCTGCAGCAGCAACA
CTTGCAGGAGCAGCAGGAGCAACTGCATCAGCCACATGGGCAGGAACAGC
AAACACAGAACTGCAAAGACGATCTGGTCAACTATCTATCGGATGAGTTC
ATCAAGGCCGAGGAGTTCCGGAGCCTGGACAGTGACGATGACGAGAACTA
CAACGAGGAGGAGGATGACCTGGACAATGACGTGTTTGCCCCACCGGCGG
AAAGTGATCCCAAGCCGGATTCAACCTGCTGTGATCCCGAGGCGGAGCCA
GAGAATGAGGTCATCCCACTCATCTGCCGCTGGACGGGATGCGACGAGGA
GTTCCCGCACCAACAGGCCTTCGTCGAGCACATCGAGAAGTGCCATGTGG
ATGTGCGCAAGGGCGAGGACTTCTCCTGCTTCTGGCTAGACTGCCCCAGG
CGCTACAAGCCCTTCAATGCCCGCTACAAGCTGCTCATCCACATGCGAGT
TCACAGCGGCGAGAAGCCCAACAAATGTCCGTTTCCCGGCTGCAATAAAG
CATTCTCGCGTTTGGAAAATTTGAAAATTCATCAACGCTCGCACACGGGC
GAGCGGCCTTATGGCTGCCAGTATAAAGGTTGCCTCAAAGCGTTCAGCAA
TAGCTCGGATCGGGCGAAACATCAAAGGACCCACTACGATACGAAACCGT
ATGCCTGCCAGCTGCCTGGATGCACCAAGCGCTACACGGATCCCTCCAGC
CTCCGCAAACATGTCAAGAACCACGCGCTGCGCAACGCCAACGGACAGCT
GCGCCGCAAATCTGCCGGCGGCGCTTCCGTACCGCCCTCCGGTCCAAAGA
AGGCGGCCAAAACACGCCGTCACTCCGAGTCGGCACTGGTGCAAAGGGGC
GTGGGTGCGGGCGTGGGCGTGGCCGTGCCAAGTGCTCCGGGGGATCAGCG
ACAACACCGCAGCAATAGTTGCAGCGAGGCATTGCTGCTGCAGCAGCATC
AACAGCAGCAGCAACAGCAGCAGCAGCAGCAGAAGCAGCATCAGCCAGAA
AACGAAAGGACGACAGACCGCAGCAATTGCGGCACCGGTGTTGCAGCTAA
TAACAATTCAATGAACTTTAATGAGTTGTCAAATTGCATTGTCATCATCG
AGCACAATCAGAGCGGAGGTCCTGCAGGACCTGCAACACTGGCAACCGCA
ACAGCAACAACAACGGCAACAGCAACATATGGCAATGGCAACATGGCGCC
CGCACCGGAAACGGAAGTGCTGAGCGTTTGCAGCGGTGGCGGCAGCAGTA
ACAGTAACAGCAACAATAACCGTTACAATGCGAATATTAATCAATTAAGC
GAACTCGAGCAATTGCTGACGACGGCGAAGCCCACAGGTACGCCAGCCGC
ATCTGCTAATGGAATTAGCCTGGCCAACAATAATGGCCGCGCCAATGGTG
ACAGCAAATGCCACTTGAGCGAGTTTGTGTCGTTCGAGTACGTGACAAAG
TATCTGACGGATGTCTACGAGCCGCAATGCAAAAGCCCACAGCCCCCGGC
TAATTTCCATTTGCAGCCCGAATTTGACAACAGCTTCGACATGCTGGACT
TCCCGCAGTTCATTTAAAAGCTTTCTAGACCAT
BS01321.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lmd-RB | 2601 | CG4677-PB | 1..2601 | 17..2617 | 13005 | 100 | Plus |
| lmd-RC | 1098 | CG4677-PC | 12..1098 | 1531..2617 | 5435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lmd-RB | 3197 | CG4677-RB | 263..2863 | 17..2617 | 13005 | 100 | Plus |
| lmd-RC | 1579 | CG4677-RC | 159..1245 | 1531..2617 | 5435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23024937..23026451 | 1531..17 | 7575 | 100 | Minus |
| 3R | 32079331 | 3R | 23021556..23022480 | 2617..1693 | 4625 | 100 | Minus |
| 3R | 32079331 | 3R | 23023760..23023922 | 1693..1531 | 815 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6906 | 2172..2327 | 232 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6526..6847 | 1994..2322 | 214 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2408 | 2215..2328 | 142 | 63.2 | Plus |
BS01321.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:19 Download gff for
BS01321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lmd-RB | 263..2861 | 17..2615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:58 Download gff for
BS01321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lmd-RB | 263..2861 | 17..2615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:10 Download gff for
BS01321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lmd-RB | 263..2861 | 17..2615 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:10 Download gff for
BS01321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23021558..23022479 | 1694..2615 | 100 | <- | Minus |
| 3R | 23023760..23023921 | 1532..1693 | 100 | <- | Minus |
| 3R | 23024937..23026451 | 17..1531 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:58 Download gff for
BS01321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18847280..18848201 | 1694..2615 | 100 | <- | Minus |
| arm_3R | 18849482..18849643 | 1532..1693 | 100 | <- | Minus |
| arm_3R | 18850659..18852173 | 17..1531 | 100 | | Minus |
BS01321.pep Sequence
Translation from 16 to 2616
> BS01321.pep
MSSSLKTSQSGGMYVKTSSISGISSISGKEAASCYGGFMSPPLSANITAN
NGEREMFRVPGAKVETNESYACGELQFPDFSHLCFAAETPNSVFSDCHNY
AGQDQQQDSDQDDIVCAAAENTGMPYQQGQYTQLNREDIFRFEPEDIARL
TGESELPGMLQHPQTPYTPYTPYTPYTPCSAQNSQYAVQPANDSINLDID
YFNYDEINCQSKNQSPCSSPHLDAWLNFNLGEISAAASSSAASPKLGNVF
EEQVKEEASPAKLPSMNSTFGTPKCIPMCASNYEDYANLYQQGSGYSTEN
YHNNMAQVVEKPNREHKAIWTIDELDELMLGEQQQFLQHHLQQQHLQEQQ
EQLHQPHGQEQQTQNCKDDLVNYLSDEFIKAEEFRSLDSDDDENYNEEED
DLDNDVFAPPAESDPKPDSTCCDPEAEPENEVIPLICRWTGCDEEFPHQQ
AFVEHIEKCHVDVRKGEDFSCFWLDCPRRYKPFNARYKLLIHMRVHSGEK
PNKCPFPGCNKAFSRLENLKIHQRSHTGERPYGCQYKGCLKAFSNSSDRA
KHQRTHYDTKPYACQLPGCTKRYTDPSSLRKHVKNHALRNANGQLRRKSA
GGASVPPSGPKKAAKTRRHSESALVQRGVGAGVGVAVPSAPGDQRQHRSN
SCSEALLLQQHQQQQQQQQQQQKQHQPENERTTDRSNCGTGVAANNNSMN
FNELSNCIVIIEHNQSGGPAGPATLATATATTTATATYGNGNMAPAPETE
VLSVCSGGGSSNSNSNNNRYNANINQLSELEQLLTTAKPTGTPAASANGI
SLANNNGRANGDSKCHLSEFVSFEYVTKYLTDVYEPQCKSPQPPANFHLQ
PEFDNSFDMLDFPQFI*
BS01321.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lmd-PB | 866 | CG4677-PB | 1..866 | 1..866 | 4680 | 100 | Plus |
| lmd-PC | 365 | CG4677-PC | 5..365 | 506..866 | 1924 | 100 | Plus |
| ci-PB | 1279 | CG2125-PB | 262..482 | 352..584 | 524 | 47.7 | Plus |
| ci-PA | 1397 | CG2125-PA | 380..600 | 352..584 | 524 | 47.7 | Plus |
| opa-PA | 609 | CG1133-PA | 231..491 | 442..681 | 500 | 40.5 | Plus |
