Clone Sequence Records
BS01327.3prime Sequence
879 bp (818 high quality bases) assembled on 2005-11-29
> BS01327.3prime
ATGGTCTAGAAAGCTTTTAGTAAACAACCGGGTGCTGTTCCACGTTCGCT
GGCAGATGCTGCAGCTGGATGGCGGCACGTGCCAGAGCACTTGGGTCACT
GATCAAGGCGATGGGCGGCGGCTGCTGTTGCTGCTGCGGTGGCGGGGCCT
GTGGATGACCCTGCTGTTGCTGCTGGTGATGCTGTTGCTGTTGTTGCTGC
TGGTGTTGCTGTTGCTGCTGTTGACGATGCTGCTCCTGCTGATGATGGTG
AGCCGCCTGTTGGATGGACAACTGAAGCAGTTGTTGCTGCTGCTGCAACT
GCTGTTGCTGCTGCTGGTGTGCAGCCACTGCAGCCTGCTGTTGATGTTGC
GCGGCCACTTGTTGTTGATGCTGCTGATGTGCAGCAGCCGCCTGTTGCTG
AGCTGCTTGCTGTTGGGCAGCAGCGGCGGCTGCGGCCTGTTGCTGTGCAG
CTGCTGCGGCGGCTGCTTGCTGCTTCTGCGACTGCTGTTGAGCAGCCGCA
TTATGTGAGATGAGCGTAGAGGTAACCAGGGGCACCAGACCCGGTGTTAA
CTGGACCGCACCGGCTCCGCCCGCCGCACCCGCCGTGATCTGCTGAATGG
TGTGCATTGTGGTGGTCGCCGAGTGATGGGGAATTATGATCGGTTTCACT
TCCTGCTTGACTTGCGTCAGCACACCAGCCGGTATTTGCGGATGCGGATG
CACGGGTGGTGGCGGCATCATAGCATCCGGGTGATTCATCTTCATGTGGC
GCTTCAAATTGCCGCGCTCGACGAACGCCTTGCTGCACAGTGTGCACGCG
TGTGGTTTCTCACCCGAATGGGAGCGCATGTGCGAGACCAAGTGACCCTT
GCAGATGAAGTTCTTGGGGCACTTCTCGC
BS01327.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14938-PC | 2271 | crol-RC | 1409..2271 | 879..17 | 4290 | 99.8 | Minus |
| CG14938-PD | 2637 | crol-RD | 1775..2637 | 879..17 | 4290 | 99.8 | Minus |
| CG14938-PA | 2889 | crol-RA | 2027..2889 | 879..17 | 4290 | 99.8 | Minus |
| CG14938-PB | 2676 | crol-RB | 2060..2676 | 633..17 | 3085 | 100 | Minus |
| CG14938-PB | 2676 | crol-RB | 2027..2057 | 879..849 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crol-RI | 5617 | CG14938-RI | 2799..3661 | 879..17 | 4300 | 99.9 | Minus |
| crol-RG | 6097 | CG14938-RG | 2437..3299 | 879..17 | 4300 | 99.9 | Minus |
| crol-RF | 6184 | CG14938-RF | 2524..3386 | 879..17 | 4300 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:46:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11797125..11797741 | 17..633 | 3085 | 100 | Plus |
| 2L | 23513712 | 2L | 11797829..11798042 | 634..847 | 1070 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 12:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2665 | 490..174 | 473 | 65.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6923 | 320..121 | 445 | 71.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2538 | 343..115 | 440 | 67.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6944 | 380..166 | 437 | 70.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2678 | 490..110 | 402 | 62.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2501 | 295..99 | 380 | 67.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6857 | 308..121 | 379 | 68.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6899 | 309..121 | 375 | 69.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2637 | 474..115 | 356 | 60.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6452..6868 | 487..87 | 333 | 58.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2475..2853 | 490..121 | 322 | 60.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2424 | 245..121 | 319 | 72.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2429..2829 | 506..115 | 305 | 59.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6886 | 221..50 | 294 | 67.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2403 | 215..118 | 229 | 74.3 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1045..1145 | 224..118 | 223 | 73.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6800 | 206..115 | 205 | 75 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2379 | 193..115 | 183 | 74.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1588 | 196..117 | 163 | 73.8 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3219..3310 | 211..123 | 156 | 65.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6779 | 177..115 | 146 | 73 | Minus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 516..648 | 415..283 | 142 | 58.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1581 | 195..115 | 128 | 63.4 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1112 | 183..118 | 120 | 71.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6441..6560 | 234..115 | 113 | 59.3 | Minus |
BS01327.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:47 Download gff for
BS01327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crol-PA | 2027..2889 | 17..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:26 Download gff for
BS01327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14938-PA | 2027..2889 | 17..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:32:12 Download gff for
BS01327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crol-RF | 2524..3389 | 14..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:18:41 Download gff for
BS01327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crol-RF | 2524..3389 | 14..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:18:41 Download gff for
BS01327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11797122..11797741 | 14..633 | 99 | <- | Plus |
| 2L | 11797829..11798041 | 634..846 | 100 | <- | Plus |
| 2L | 11798665..11798697 | 847..879 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:32:12 Download gff for
BS01327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11797122..11797741 | 14..633 | 99 | <- | Plus |
| arm_2L | 11797829..11798041 | 634..846 | 100 | <- | Plus |
| arm_2L | 11798665..11798697 | 847..879 | 96 | | Plus |
BS01327.5prime Sequence
781 bp (777 high quality bases) assembled on 2005-11-29
> BS01327.5prime
GAAGTTATCAGTCGACATGCAGCACGTGAGCGCTGCCAGCTCGGTGCCAT
CAGTAGTAACTCCTGTTGTGACCACTGGTGGGACAACGATCACATTGGGC
GGCCCACCACCGCTCCCTAAATCCGAGCACAAAGAGGATGGCAAGCCGCC
GCACGGCATCGAAATGTACAAGGTGAACATTGAGGACATTTCGCAGCTCT
TCACCTACCACGAGGTCTTTGGCAAAATCCACGGCGATGTGGTCAATCAT
CAATTAGCAGCGGCCCACGGCGGCCAGTTGCCACCACCTCCTCCGCTGCC
GCCGCAGGTTACCAGTCATGCGGCGAGTGCAGCGGCAGCCGCAGCAGCGG
CGTCCACGAATAATGCCGCCGTTGCAGCGGTAATGGCATCAGCGAATGCA
GCAGCGGCCGCGGCGGCAGCTGCATCGGCGGGGGGAGGACTACCGCCGGC
CACCAGCGGCAATGGGGGCCAGCAGGTGACGGTGACGACGACCAGCAGCT
CGACTAGCAGCGGCGGGAGCACCACCAGTGGGGGCACCACGACCACGGCG
GGTGAGTTGCTTATGCCTAAAATGGAGGGCGGAATTCATGGCGTGGACGG
CAGCGGCAATGGCGGCAATGGTGGCGGACAAAACGTGGCGCTGGCGCCAG
ACGGTACGCCCATTGCGACGGGGACGCACGTCTGCGACATCTGCGGCAAG
ATGTTCCAGTTCCGGTACCAGCTGATCGTGCACCGGCGCTACCACAGCGA
ACGGAAGCCGTTCATGTGCCAGGTGTGCGGG
BS01327.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14938-PB | 2676 | crol-RB | 1..764 | 17..780 | 3820 | 100 | Plus |
| CG14938-PD | 2637 | crol-RD | 1..764 | 17..780 | 3820 | 100 | Plus |
| CG14938-PA | 2889 | crol-RA | 1..764 | 17..780 | 3820 | 100 | Plus |
| CG14938-PC | 2271 | crol-RC | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crol-RI | 5617 | CG14938-RI | 773..1536 | 17..780 | 3820 | 100 | Plus |
| crol-RG | 6097 | CG14938-RG | 663..1426 | 17..780 | 3820 | 100 | Plus |
| crol-RF | 6184 | CG14938-RF | 663..1426 | 17..780 | 3820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11802676..11803439 | 780..17 | 3820 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 05:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 591..760 | 483..320 | 152 | 60.6 | Minus |
BS01327.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:48 Download gff for
BS01327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crol-PB | 1..764 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:28 Download gff for
BS01327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14938-PA | 1..764 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:37:37 Download gff for
BS01327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crol-RF | 656..1426 | 9..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:39 Download gff for
BS01327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crol-RF | 656..1426 | 9..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:39 Download gff for
BS01327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11802675..11803444 | 9..781 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:37:37 Download gff for
BS01327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11802675..11803444 | 9..781 | 99 | | Minus |
BS01327.complete Sequence
2669 bp (2669 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634598
> BS01327.complete
GAAGTTATCAGTCGACATGCAGCACGTGAGCGCTGCCAGCTCGGTGCCAT
CAGTAGTAACTCCTGTTGTGACCACTGGTGGGACAACGATCACATTGGGC
GGCCCACCACCGCTCCCTAAATCCGAGCACAAAGAGGATGGCAAGCCGCC
GCACGGCATCGAAATGTACAAGGTGAACATTGAGGACATTTCGCAGCTCT
TCACCTACCACGAGGTCTTTGGCAAAATCCACGGCGATGTGGTCAATCAT
CAATTAGCAGCGGCCCACGGCGGCCAGTTGCCACCACCTCCTCCGCTGCC
GCCGCAGGTTACCAGTCATGCGGCGAGTGCAGCGGCAGCCGCAGCAGCGG
CGTCCACGAATAATGCCGCCGTTGCAGCGGTAATGGCATCAGCGAATGCA
GCAGCGGCCGCGGCGGCAGCTGCATCGGCGGGGGGAGGACTACCGCCGGC
CACCAGCGGCAATGGGGGCCAGCAGGTGACGGTGACGACGACCAGCAGCT
CGACTAGCAGCGGCGGGAGCACCACCAGTGGGGGCACCACGACCACGGCG
GGTGAGTTGCTTATGCCTAAAATGGAGGGCGGAATTCATGGCGTGGACGG
CAGCGGCAATGGCGGCAATGGTGGCGGACAAAACGTGGCGCTGGCGCCAG
ACGGTACGCCCATTGCGACGGGGACGCACGTCTGCGACATCTGCGGCAAG
ATGTTCCAGTTCCGGTACCAGCTGATCGTGCACCGGCGCTACCACAGCGA
ACGGAAGCCGTTCATGTGCCAGGTGTGCGGCCAGGGGTTCACCACGTCGC
AGGATTTGACGCGCCACGGCAAGATCCATATTGGCGGGCCCATGTTCACC
TGCATCGTGTGCTTCAATGTGTTCGCGAACAATACGAGCCTGGAGCGGCA
CATGAAACGGCACTCGACGGACAAACCGTTCGCCTGCACCATTTGCCAAA
AGACCTTTGCCCGCAAAGAGCATCTGGACAATCACTTCCGCTCGCACACG
GGCGAAACGCCCTTCCGTTGCCAGTACTGCGCCAAGACGTTCACGCGCAA
GGAGCACATGGTCAACCATGTGCGCAAACACACGGGTGAGACGCCACATC
GTTGCGATATTTGTAAGAAGTCCTTTACGCGCAAGGAACACTATGTTAAC
CACTACATGTGGCACACTGGCGAGACGCCGCACCGGTGCGACTTTTGCTC
CAAGACGTTTACGCGAAAGGAGCACTTGCTTAACCACGTGCGCCAGCATA
CGGGAGAGTCGCCACACCGCTGCTCCTACTGCATGAAGACGTTCACGCGC
AAGGAGCACCTGGTCAACCACATACGCCAGCACACGGGCGAGTCGCCGCA
CAAGTGCACGTACTGCACCAAGACGTTCACGCGCAAGGAGCACCTGACGA
ACCATGTGCGCCAGCACACGGGCGACTCCCCGCACCGCTGCTCCTACTGC
AAGAAGACCTTCACGCGCAAGGAGCACCTGACGAACCATGTGCGCCTGCA
CACGGGCGACTCGCCGCACAAGTGCGAGTACTGCCAGAAGACGTTTACGC
GGAAGGAGCACCTCAACAATCATATGCGCCAGCATTCGAGCGACAATCCG
CATTGCTGCAACGTTTGCAACAAGCCGTTTACGCGCAAGGAACACCTGAT
CAACCATATGTCGCGGTGCCACACCGGTGACCGGCCCTTCACCTGCGAGA
CGTGCGGCAAATCGTTCCCGCTCAAGGGCAATCTGCTCTTCCATCAGCGC
AGCCATACCAAGGGCCAGGAGATGGAGCGGCCATTCGCCTGCGAGAAGTG
CCCCAAGAACTTCATCTGCAAAGGTCACTTGGTCTCGCACATGCGCTCCC
ATTCGGGTGAGAAACCACACGCGTGCACACTGTGCAGCAAGGCGTTCGTC
GAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTAT
GATGCCGCCACCACCCGTGCATCCGCATCCGCAAATACCGGCTGGTGTGC
TGACGCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCATCACTCG
GCGACCACCACAATGCACACCATTCAGCAGATCACGGCGGGTGCGGCGGG
CGGAGCCGGTGCGGTCCAGTTAACACCGGGTCTGGTGCCCCTGGTTACCT
CTACGCTCATCTCACATAATGCGGCTGCTCAACAGCAGTCGCAGAAGCAG
CAAGCAGCCGCCGCAGCAGCTGCACAGCAACAGGCCGCAGCCGCCGCTGC
TGCCCAACAGCAAGCAGCTCAGCAACAGGCGGCTGCTGCACATCAGCAGC
ATCAACAACAAGTGGCCGCGCAACATCAACAGCAGGCTGCAGTGGCTGCA
CACCAGCAGCAGCAACAGCAGTTGCAGCAGCAGCAACAACTGCTTCAGTT
GTCCATCCAACAGGCGGCTCACCATCATCAGCAGGAGCAGCATCGTCAAC
AGCAGCAACAGCAACACCAGCAGCAACAACAGCAACAGCATCACCAGCAG
CAACAGCAGGGTCATCCACAGGCCCCGCCACCGCAGCAGCAACAGCAGCC
GCCGCCCATCGCCTTGATCAGTGACCCAAGTGCTCTGGCACGTGCCGCCA
TCCAGCTGCAGCATCTGCCAGCGAACGTGGAACAGCACCCGGTTGTTTAC
TAAAAGCTTTCTAGACCAT
BS01327.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crol-RD | 2637 | CG14938-PD | 1..2637 | 17..2653 | 13185 | 100 | Plus |
| crol-RG | 2637 | CG14938-PG | 1..2637 | 17..2653 | 12120 | 97.3 | Plus |
| crol-RF | 2724 | CG14938-PF | 1240..2724 | 1169..2653 | 7425 | 100 | Plus |
| crol-RG | 2637 | CG14938-PG | 1063..1560 | 1163..1660 | 1410 | 85.5 | Plus |
| crol-RD | 2637 | CG14938-PD | 978..1473 | 1162..1657 | 800 | 77.4 | Plus |
| crol-RD | 2637 | CG14938-PD | 1146..1641 | 994..1489 | 800 | 77.4 | Plus |
| crol-RD | 2637 | CG14938-PD | 1063..1560 | 1163..1660 | 795 | 77.3 | Plus |
| crol-RD | 2637 | CG14938-PD | 1147..1644 | 1079..1576 | 795 | 77.3 | Plus |
| crol-RG | 2637 | CG14938-PG | 1063..1644 | 995..1576 | 795 | 75.8 | Plus |
| crol-RG | 2637 | CG14938-PG | 978..1473 | 1162..1657 | 755 | 76.8 | Plus |
| crol-RG | 2637 | CG14938-PG | 1186..1641 | 1034..1489 | 690 | 76.8 | Plus |
| crol-RG | 2637 | CG14938-PG | 1018..1389 | 1286..1657 | 615 | 77.7 | Plus |
| crol-RG | 2637 | CG14938-PG | 946..1232 | 1298..1584 | 460 | 77.4 | Plus |
| crol-RD | 2637 | CG14938-PD | 1282..1640 | 962..1320 | 325 | 72.7 | Plus |
| crol-RD | 2637 | CG14938-PD | 946..1304 | 1298..1656 | 325 | 72.7 | Plus |
| crol-RD | 2637 | CG14938-PD | 1018..1389 | 1286..1657 | 300 | 72 | Plus |
| crol-RD | 2637 | CG14938-PD | 1270..1641 | 1034..1405 | 300 | 72 | Plus |
| crol-RG | 2637 | CG14938-PG | 978..1220 | 1414..1656 | 300 | 74.9 | Plus |
| crol-RG | 2637 | CG14938-PG | 1198..1641 | 962..1405 | 300 | 71.2 | Plus |
| crol-RG | 2637 | CG14938-PG | 1344..1640 | 1024..1320 | 285 | 73.1 | Plus |
| crol-RG | 2637 | CG14938-PG | 934..1136 | 1454..1656 | 190 | 72.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crol-RD | 6207 | CG14938-RD | 773..3409 | 17..2653 | 13185 | 100 | Plus |
| crol-RG | 6097 | CG14938-RG | 663..3299 | 17..2653 | 12120 | 97.3 | Plus |
| crol-RF | 6184 | CG14938-RF | 1902..3386 | 1169..2653 | 7425 | 100 | Plus |
| crol-RG | 6097 | CG14938-RG | 1725..2222 | 1163..1660 | 1410 | 85.5 | Plus |
| crol-RD | 6207 | CG14938-RD | 1750..2245 | 1162..1657 | 800 | 77.4 | Plus |
| crol-RD | 6207 | CG14938-RD | 1918..2413 | 994..1489 | 800 | 77.4 | Plus |
| crol-RD | 6207 | CG14938-RD | 1835..2332 | 1163..1660 | 795 | 77.3 | Plus |
| crol-RD | 6207 | CG14938-RD | 1919..2416 | 1079..1576 | 795 | 77.3 | Plus |
| crol-RG | 6097 | CG14938-RG | 1725..2306 | 995..1576 | 795 | 75.8 | Plus |
| crol-RG | 6097 | CG14938-RG | 1640..2135 | 1162..1657 | 755 | 76.8 | Plus |
| crol-RG | 6097 | CG14938-RG | 1848..2303 | 1034..1489 | 690 | 76.8 | Plus |
| crol-RG | 6097 | CG14938-RG | 1680..2051 | 1286..1657 | 615 | 77.7 | Plus |
| crol-RG | 6097 | CG14938-RG | 1608..1894 | 1298..1584 | 460 | 77.4 | Plus |
| crol-RD | 6207 | CG14938-RD | 1718..2076 | 1298..1656 | 325 | 72.7 | Plus |
| crol-RD | 6207 | CG14938-RD | 2054..2412 | 962..1320 | 325 | 72.7 | Plus |
| crol-RD | 6207 | CG14938-RD | 1790..2161 | 1286..1657 | 300 | 72 | Plus |
| crol-RD | 6207 | CG14938-RD | 2042..2413 | 1034..1405 | 300 | 72 | Plus |
| crol-RG | 6097 | CG14938-RG | 1640..1882 | 1414..1656 | 300 | 74.9 | Plus |
| crol-RG | 6097 | CG14938-RG | 1860..2303 | 962..1405 | 300 | 71.2 | Plus |
| crol-RG | 6097 | CG14938-RG | 2006..2302 | 1024..1320 | 285 | 73.1 | Plus |
| crol-RG | 6097 | CG14938-RG | 1596..1798 | 1454..1656 | 190 | 72.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11802282..11803439 | 1174..17 | 5775 | 99.9 | Minus |
| 2L | 23513712 | 2L | 11797125..11797741 | 2653..2037 | 3085 | 100 | Minus |
| 2L | 23513712 | 2L | 11798663..11799400 | 1825..1088 | 2640 | 90.5 | Minus |
| 2L | 23513712 | 2L | 11798912..11799403 | 1660..1169 | 1395 | 85.6 | Minus |
| 2L | 23513712 | 2L | 11797829..11798043 | 2036..1822 | 1075 | 100 | Minus |
| 2L | 23513712 | 2L | 11798828..11799376 | 1576..1028 | 765 | 76 | Minus |
| 2L | 23513712 | 2L | 11798831..11799286 | 1489..1034 | 690 | 76.8 | Minus |
| 2L | 23513712 | 2L | 11798999..11799370 | 1657..1286 | 600 | 77.4 | Minus |
| 2L | 23513712 | 2L | 11799083..11799403 | 1657..1337 | 450 | 76 | Minus |
| 2L | 23513712 | 2L | 11798831..11799274 | 1405..962 | 300 | 71.2 | Minus |
| 2L | 23513712 | 2L | 11798832..11799128 | 1320..1024 | 285 | 73.1 | Minus |
| 2L | 23513712 | 2L | 11802315..11802494 | 1477..1298 | 270 | 76.7 | Minus |
| 2L | 23513712 | 2L | 11799240..11799370 | 1584..1454 | 220 | 77.9 | Minus |
| 2L | 23513712 | 2L | 11802351..11802462 | 1273..1162 | 200 | 78.6 | Minus |
| 2L | 23513712 | 2L | 11802361..11802422 | 1347..1286 | 190 | 87.1 | Minus |
Blast to na_te.dros performed 2014-11-27 14:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2665 | 2180..2496 | 473 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6923 | 2350..2549 | 445 | 71.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2538 | 2327..2555 | 440 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6944 | 2290..2504 | 437 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2678 | 2180..2560 | 402 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2501 | 2375..2571 | 380 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6857 | 2362..2549 | 379 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6899 | 2361..2549 | 375 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2637 | 2196..2555 | 356 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6452..6868 | 2183..2583 | 333 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2475..2853 | 2180..2549 | 322 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2424 | 2425..2549 | 319 | 72.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2429..2829 | 2164..2555 | 305 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6886 | 2449..2620 | 294 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2403 | 2455..2552 | 229 | 74.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1045..1145 | 2446..2552 | 223 | 73.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6800 | 2464..2555 | 205 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2379 | 2477..2555 | 183 | 74.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1588 | 2474..2553 | 163 | 73.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3219..3310 | 2459..2547 | 156 | 65.2 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 591..760 | 483..320 | 152 | 60.6 | Minus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 516..648 | 2255..2387 | 142 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1581 | 2475..2555 | 128 | 63.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1112 | 2487..2552 | 120 | 71.6 | Plus |
BS01327.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:10 Download gff for
BS01327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crol-RC | 685..871 | 1151..1337 | 97 | -> | Plus |
| crol-RC | 956..2271 | 1338..2653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:15 Download gff for
BS01327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crol-RC | 2103..2289 | 1151..1337 | 97 | -> | Plus |
| crol-RC | 2374..3692 | 1338..2656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:38 Download gff for
BS01327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crol-RD | 773..3407 | 17..2651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:10 Download gff for
BS01327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crol-RC | 2103..2289 | 1151..1337 | 97 | -> | Plus |
| crol-RC | 2374..3692 | 1338..2656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:33 Download gff for
BS01327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crol-RD | 773..3407 | 17..2651 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:33 Download gff for
BS01327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11797829..11798041 | 1824..2036 | 100 | <- | Minus |
| 2L | 11798665..11799150 | 1338..1823 | 100 | <- | Minus |
| 2L | 11797127..11797741 | 2037..2651 | 100 | <- | Minus |
| 2L | 11799235..11799402 | 1170..1337 | 100 | <- | Minus |
| 2L | 11802287..11803439 | 17..1169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:38 Download gff for
BS01327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11797127..11797741 | 2037..2651 | 100 | <- | Minus |
| arm_2L | 11797829..11798041 | 1824..2036 | 100 | <- | Minus |
| arm_2L | 11798665..11799150 | 1338..1823 | 100 | <- | Minus |
| arm_2L | 11799235..11799402 | 1170..1337 | 100 | <- | Minus |
| arm_2L | 11802287..11803439 | 17..1169 | 100 | | Minus |
BS01327.pep Sequence
Translation from 16 to 2652
> BS01327.pep
MQHVSAASSVPSVVTPVVTTGGTTITLGGPPPLPKSEHKEDGKPPHGIEM
YKVNIEDISQLFTYHEVFGKIHGDVVNHQLAAAHGGQLPPPPPLPPQVTS
HAASAAAAAAAASTNNAAVAAVMASANAAAAAAAAASAGGGLPPATSGNG
GQQVTVTTTSSSTSSGGSTTSGGTTTTAGELLMPKMEGGIHGVDGSGNGG
NGGGQNVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFM
CQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHS
TDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVN
HVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGETPHRCDFCSKTFTR
KEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGESPHKCTYC
TKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSP
HKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSR
CHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQEMERPFACEKCPKNFI
CKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPP
VHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAGGAGAV
QLTPGLVPLVTSTLISHNAAAQQQSQKQQAAAAAAAQQQAAAAAAAQQQA
AQQQAAAAHQQHQQQVAAQHQQQAAVAAHQQQQQQLQQQQQLLQLSIQQA
AHHHQQEQHRQQQQQQHQQQQQQQHHQQQQQGHPQAPPPQQQQQPPPIAL
ISDPSALARAAIQLQHLPANVEQHPVVY*
BS01327.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crol-PD | 878 | CG14938-PD | 1..878 | 1..878 | 4789 | 100 | Plus |
| crol-PF | 907 | CG14938-PF | 1..907 | 1..878 | 4701 | 95.9 | Plus |
| crol-PG | 878 | CG14938-PG | 1..878 | 1..878 | 4682 | 97.4 | Plus |
| crol-PI | 962 | CG14938-PI | 1..962 | 1..878 | 4577 | 89.4 | Plus |
| crol-PE | 962 | CG14938-PE | 1..962 | 1..878 | 4577 | 89.4 | Plus |
