Clone Sequence Records
BS01331.3prime Sequence
784 bp (777 high quality bases) assembled on 2005-11-29
> BS01331.3prime
ATGGTCTAGAAAGCTTTTAGGCTATTGCAGCCGTCAGATAGTACAGATCC
ATTAGCGTCTGGACATTGATGGGCAGACAGGAGAGACGATCGTGTGTGTT
GGAGTCGAGCGCCAGCCAGGAAAGGGCATTGTATCCCTCGAGGACGAAGC
GCAGCACATCCGCTGTGAGATTGGAGTCAAGCGGATGATCGTTGCCTGAC
TGATGGGCATTGGTCGAGTTGAGAATATCGTCGGCAGACTGTATGCTGGG
CACATGGAGATGGAGGGCTGTCTTCAGAAACACCGGACAAACGTCTTCTA
GATGCGGACAGGCGGACCAGAACCAAGCAGGCATGCGACCGGTTGGCGCC
GTGGACACCATGTAACCCACTGATATGGGCTGCTGGTTGAGTGAACCAAC
CTCCTCTACTTCCTGGGGCGGCGTGCACTTGAAATTATTACCGCCAGCGC
TCTGCCAACTCCGATTGTCATCCATGCGACCGGGACTACCATGATTGGAT
ACTCTGTCCATATGAGTGTCCCAGAAGAGATCTCCAATGTCCGCATCGCT
GAAGTCCTCGTTGCCCTCTTCCTCGAATGTTAGAAAGTCGTCATCTACTT
GCGGCTCGTTTTGGAACTGGCGCGTAAAAGGCGCACAGACGGCGCTAGTG
GGAAAGACCAGGATGTGGGTGCAGGTCACGTCCTGTGGAGTGGCCAACGG
GTTCTGCATGGAAATCTGTGAGAAGCGCTCATCTGGCGTAAACTGGTCGG
GCATCACGCGCAGCTTGGCATCCGGCTCCNAGGT
BS01331.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9936-PC | 7857 | skd-RC | 7090..7857 | 784..17 | 3821 | 99.8 | Minus |
| CG9936-PD | 7857 | skd-RD | 7090..7857 | 784..17 | 3821 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:42:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| skd-RF | 9982 | CG9936-RF | 7642..8409 | 784..17 | 3829 | 99.9 | Minus |
| skd-RE | 10703 | CG9936-RE | 8363..9130 | 784..17 | 3829 | 99.9 | Minus |
| skd-RD | 10465 | CG9936-RD | 8125..8892 | 784..17 | 3829 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20995704..20996089 | 17..402 | 1930 | 100 | Plus |
| 3L | 28110227 | 3L | 20996502..20996654 | 632..784 | 754 | 99.3 | Plus |
| 3L | 28110227 | 3L | 20996143..20996264 | 395..516 | 595 | 99.2 | Plus |
| 3L | 28110227 | 3L | 20996324..20996439 | 517..632 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:42:06 has no hits.
BS01331.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:55 Download gff for
BS01331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-PD | 7090..7857 | 17..784 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:39 Download gff for
BS01331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9936-PD | 7090..7857 | 17..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:28:25 Download gff for
BS01331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-RD | 8125..8892 | 17..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:53:55 Download gff for
BS01331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-RD | 8125..8892 | 17..784 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:53:55 Download gff for
BS01331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20995704..20996087 | 17..400 | 100 | <- | Plus |
| 3L | 20996149..20996264 | 401..516 | 100 | <- | Plus |
| 3L | 20996324..20996438 | 517..631 | 100 | <- | Plus |
| 3L | 20996502..20996654 | 632..784 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:28:25 Download gff for
BS01331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20988804..20989187 | 17..400 | 100 | <- | Plus |
| arm_3L | 20989249..20989364 | 401..516 | 100 | <- | Plus |
| arm_3L | 20989424..20989538 | 517..631 | 100 | <- | Plus |
| arm_3L | 20989602..20989754 | 632..784 | 99 | | Plus |
BS01331.5prime Sequence
789 bp (773 high quality bases) assembled on 2005-11-29
> BS01331.5prime
GAAGTTATCAGTCGACATGTCCCGCCAACGAAGGATCTTCGGTAACAATG
GAGCTCCCACTGCCTCATTGGCATCAATTGCAAATGTTCTAGAGTTTATG
GATGCACACGACGTTATAAGTTTGGCCCTGGAGCAGTCGAGATTGGCATT
CGAAAACCAGCGGATGGACAACATGATGGACTTCCATGGGAATGGTAGCA
GTAGCTCGCATCAGCAGCAGCAACTGACAGCTTTCCATGCGCCACCACCT
GCTTTGCGTCACAAGCTAGCAGGTATTGGTGCTGGGCGGTTGACGGTTCA
CAAGTGGCCATATCTTCCCGTCGGTTTCACCCGTAGCAATAAGGAGATTG
TACGCACCATGAATGCTATACAGCCGATGCTGCAGAATGCATTCCATTGC
AAATCCAGGGGCGGCTCAGGTTCCAAGGATGCCAGTTCGTACAATACGGT
GAGTGGACCGCTAACCTGGCGCCAATTCCATCGACTGGCAGGCCGTGCAT
CCGGACAATGTGAGCCGCAACCGATACCATCCGTGGTGGTGGGCTACGAG
AAGGATTGGATCTCGGTGGCACCGCACTCCATCCACTATTGGGATAAGTT
TCTCCTGGAACCGTACTCCTATGCCAGGGATGTTGTATACGTGGTAGTGT
GTCCGGACAACGAGCATGTGGTAAATTGTACTCGCAGCTATTTCCGGGAA
CTAAGCAGCACCTACGAGATGTGCAAGCTGGGCAAACACACACCCATCCG
AGGATGGGATGGTTTCCTTCAAGTAGGCGCTGCTCGCAA
BS01331.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9936-PC | 7857 | skd-RC | 5035..5807 | 17..789 | 3865 | 100 | Plus |
| CG9936-PD | 7857 | skd-RD | 5035..5807 | 17..789 | 3865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:19:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| skd-RF | 9982 | CG9936-RF | 5587..6359 | 17..789 | 3865 | 100 | Plus |
| skd-RE | 10703 | CG9936-RE | 6308..7080 | 17..789 | 3865 | 100 | Plus |
| skd-RD | 10465 | CG9936-RD | 6070..6842 | 17..789 | 3865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20997937..20998709 | 789..17 | 3865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:19:44 has no hits.
BS01331.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:56 Download gff for
BS01331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-PD | 5029..5805 | 10..787 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:40 Download gff for
BS01331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9936-PD | 5029..5805 | 10..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:35:37 Download gff for
BS01331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-RD | 6064..6840 | 10..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:07 Download gff for
BS01331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-RD | 6064..6840 | 10..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:07 Download gff for
BS01331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20997939..20998715 | 10..787 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:35:37 Download gff for
BS01331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20991039..20991815 | 10..787 | 99 | | Minus |
BS01331.complete Sequence
2855 bp (2855 high quality bases) assembled on 2006-03-24
> BS01331.complete
GAAGTTATCAGTCGACATGTCCCGCCAACGAAGGATCTTCGGTAACAATG
GAGCTCCCACTGCCTCATTGGCATCAATTGCAAATGTTCTAGAGTTTATG
GATGCACACGACGTTATAAGTTTGGCCCTGGAGCAGTCGAGATTGGCATT
CGAAAACCAGCGGATGGACAACATGATGGACTTCCATGGGAATGGTAGCA
GTAGCTCGCATCAGCAGCAGCAACTGACAGCTTTCCATGCGCCACCACCT
GCTTTGCGTCACAAGCTAGCAGGTATTGGTGCTGGGCGGTTGACGGTTCA
CAAGTGGCCATATCTTCCCGTCGGTTTCACCCGTAGCAATAAGGAGATTG
TACGCACCATGAATGCTATACAGCCGATGCTGCAGAATGCATTCCATTGC
AAATCCAGGGGCGGCTCAGGTTCCAAGGATGCCAGTTCGTACAATACGGT
GAGTGGACCGCTAACCTGGCGCCAATTCCATCGACTGGCAGGCCGTGCAT
CCGGACAATGTGAGCCGCAACCGATACCATCCGTGGTGGTGGGCTACGAG
AAGGATTGGATCTCGGTGGCACCGCACTCCATCCACTATTGGGATAAGTT
TCTCCTGGAACCGTACTCCTATGCCAGGGATGTTGTATACGTGGTAGTGT
GTCCGGACAACGAGCATGTGGTAAATTGTACTCGCAGCTATTTCCGGGAA
CTAAGCAGCACCTACGAGATGTGCAAGCTGGGCAAACACACACCCATCCG
AGGATGGGATGGTTTCCTTCAAGTAGGCGCTGCTCGCAACAACGTGCCTG
CGGATCGGGAAACAACTCCCTTGGATGATTGGCTGCGTACCCTGGAACAT
GCTGCTCTGGCGGAGCAAATCCGTCGGTATGCAGTTGCCTTTATTCACCA
GTTGGCTCCATACCTAAGTCGAGTGCCAAATGATAAAACGCTGTTGAATC
CACCAGATGGCAGTGGCAACTCACACTCTAAAGGAGGAAGCTCTTGCTCC
TCGAATAGCTCTTCAGTCAGCGGATTGCCAGGCGGGGACTTACCCACGGA
TAATATAAAGCTGGAGCCAGGTACAGAACCACAAGTCCAACCGATGGAGA
CTAACGAAATAAAACAGGAACCCGGAGTGGGAAAAGGAGGCACTGCAGCA
GGTGAAACCAAACCAACTCTGATCCTCGGAGATCCGTTGGGAATGGGCGA
GACTTTGGAGGACATCAACCCGTCAGCCATTGTCCTTTATGTGGTCAATC
CGTTCACTTTCGCCTCGGATAGCTGCGAGCTGGAGCGTCTAGCTCTGATT
GCTCTACTTCGTTGCTATGCGGAACTGCTGAAAGCAGTCCCAGATTCAGT
GCGATCCCAGATGAACATACAGATTATATCGCTAGAATCGGTAATGGAAC
TGGGTCCGTGCGGCAATCGAAAGCGTTTCTCGGACGAGATTAGGTGCCTG
GCTCTAAACATATTTTCGCAGTGCCGGCGACATCTGGTGCATGCCCAATC
CGTTAAAAGTCTTACTGGCTTTGGTACGGCGGCTAATATGGAGGCGTTTC
TCAAGACAAAGGATGAACCCAATCGCCGGGCCTACAAGATGTACACGGCT
CCCTTTGTTCTGGCACCAATGCACGAGAGGAATGACAAAACGGACTTCTC
CAGATCAGCGGGAAGTATGCATGGCCAGAATGAACATCGTTATTCGGTTA
TGTATTGCAATTACTGCCTAAGTGAGGATCAGGCTTGGCTTTTGGCCACC
GCCACTGATGAAAGGGGCGAGATGCTGGAGAAGATCTGCATTAATATTGA
TGTGCCAAATCGTGCTCGGAGGAGAAAAGCCCCTGCTCGCTATGTGGCCC
TAAAGAAACTGATGGACTTCATCATGGGAATCATCTCGCAGACATCGCAA
ATGTGGCGTTTGGTTATCGGACGCATTGGAAGGATCGGACACAGTGAACT
GAAGTCGTGGAGTTTTTTGCTCAGCAAGCAACAGCTGCAAAAGGCATCCA
AGCAATTTAAGGATATGTGTAAGCAATGTACATTGATGTATCCACCCACG
ATCCTGAGTGCTTGCCTTGTGACCTTGGAGCCGGATGCCAAGCTGCGCGT
GATGCCCGACCAGTTTACGCCAGATGAGCGCTTCTCACAGATTTCCATGC
AGAACCCGTTGGCCACTCCACAGGACGTGACCTGCACCCACATCCTGGTC
TTTCCCACTAGCGCCGTCTGTGCGCCTTTTACGCGCCAGTTCCAAAACGA
GCCGCAAGTAGATGACGACTTTCTAACATTCGAGGAAGAGGGCAACGAGG
ACTTCAGCGATGCGGACATTGGAGATCTCTTCTGGGACACTCATATGGAC
AGAGTATCCAATCATGGTAGTCCCGGTCGCATGGATGACAATCGGAGTTG
GCAGAGCGCTGGCGGTAATAATTTCAAGTGCACGCCGCCCCAGGAAGTAG
AGGAGGTTGGTTCACTCAACCAGCAGCCCATATCAGTGGGTTACATGGTG
TCCACGGCGCCAACCGGTCGCATGCCTGCTTGGTTCTGGTCCGCCTGTCC
GCATCTAGAAGACGTTTGTCCGGTGTTTCTGAAGACAGCCCTCCATCTCC
ATGTGCCCAGCATACAGTCTGCCGACGATATTCTCAACTCGACCAATGCC
CATCAGTCAGGCAACGATCATCCGCTTGACTCCAATCTCACAGCGGATGT
GCTGCGCTTCGTCCTCGAGGGATACAATGCCCTTTCCTGGCTGGCGCTCG
ACTCCAACACACACGATCGTCTCTCCTGTCTGCCCATCAATGTCCAGACG
CTAATGGATCTGTACTATCTGACGGCTGCAATAGCCTAAAAGCTTTCTAG
ACCAT
BS01331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| skd-RF | 7806 | CG9936-PF | 4984..7806 | 17..2839 | 14115 | 100 | Plus |
| skd-RE | 8307 | CG9936-PE | 5485..8307 | 17..2839 | 14115 | 100 | Plus |
| skd-RD | 7857 | CG9936-PD | 5035..7857 | 17..2839 | 14115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| skd-RF | 9982 | CG9936-RF | 5587..8409 | 17..2839 | 14115 | 100 | Plus |
| skd-RE | 10703 | CG9936-RE | 6308..9130 | 17..2839 | 14115 | 100 | Plus |
| skd-RD | 10465 | CG9936-RD | 6070..8892 | 17..2839 | 14115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20996502..20998709 | 2224..17 | 11040 | 100 | Minus |
| 3L | 28110227 | 3L | 20995704..20996089 | 2839..2454 | 1930 | 100 | Minus |
| 3L | 28110227 | 3L | 20996143..20996264 | 2461..2340 | 595 | 99.2 | Minus |
| 3L | 28110227 | 3L | 20996324..20996439 | 2339..2224 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:08:37 has no hits.
BS01331.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:11 Download gff for
BS01331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-RE | 5479..8307 | 10..2839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:17 Download gff for
BS01331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-RE | 6504..9332 | 10..2839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:41 Download gff for
BS01331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-RD | 6070..8890 | 17..2837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:12 Download gff for
BS01331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-RE | 6504..9332 | 10..2839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:06 Download gff for
BS01331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-RD | 6070..8890 | 17..2837 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:06 Download gff for
BS01331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20995706..20996087 | 2456..2837 | 100 | <- | Minus |
| 3L | 20996149..20996264 | 2340..2455 | 100 | <- | Minus |
| 3L | 20996324..20996438 | 2225..2339 | 100 | <- | Minus |
| 3L | 20996502..20998709 | 17..2224 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:41 Download gff for
BS01331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20988806..20989187 | 2456..2837 | 100 | <- | Minus |
| arm_3L | 20989249..20989364 | 2340..2455 | 100 | <- | Minus |
| arm_3L | 20989424..20989538 | 2225..2339 | 100 | <- | Minus |
| arm_3L | 20989602..20991809 | 17..2224 | 100 | | Minus |
BS01331.pep Sequence
Translation from 16 to 2838
> BS01331.pep
MSRQRRIFGNNGAPTASLASIANVLEFMDAHDVISLALEQSRLAFENQRM
DNMMDFHGNGSSSSHQQQQLTAFHAPPPALRHKLAGIGAGRLTVHKWPYL
PVGFTRSNKEIVRTMNAIQPMLQNAFHCKSRGGSGSKDASSYNTVSGPLT
WRQFHRLAGRASGQCEPQPIPSVVVGYEKDWISVAPHSIHYWDKFLLEPY
SYARDVVYVVVCPDNEHVVNCTRSYFRELSSTYEMCKLGKHTPIRGWDGF
LQVGAARNNVPADRETTPLDDWLRTLEHAALAEQIRRYAVAFIHQLAPYL
SRVPNDKTLLNPPDGSGNSHSKGGSSCSSNSSSVSGLPGGDLPTDNIKLE
PGTEPQVQPMETNEIKQEPGVGKGGTAAGETKPTLILGDPLGMGETLEDI
NPSAIVLYVVNPFTFASDSCELERLALIALLRCYAELLKAVPDSVRSQMN
IQIISLESVMELGPCGNRKRFSDEIRCLALNIFSQCRRHLVHAQSVKSLT
GFGTAANMEAFLKTKDEPNRRAYKMYTAPFVLAPMHERNDKTDFSRSAGS
MHGQNEHRYSVMYCNYCLSEDQAWLLATATDERGEMLEKICINIDVPNRA
RRRKAPARYVALKKLMDFIMGIISQTSQMWRLVIGRIGRIGHSELKSWSF
LLSKQQLQKASKQFKDMCKQCTLMYPPTILSACLVTLEPDAKLRVMPDQF
TPDERFSQISMQNPLATPQDVTCTHILVFPTSAVCAPFTRQFQNEPQVDD
DFLTFEEEGNEDFSDADIGDLFWDTHMDRVSNHGSPGRMDDNRSWQSAGG
NNFKCTPPQEVEEVGSLNQQPISVGYMVSTAPTGRMPAWFWSACPHLEDV
CPVFLKTALHLHVPSIQSADDILNSTNAHQSGNDHPLDSNLTADVLRFVL
EGYNALSWLALDSNTHDRLSCLPINVQTLMDLYYLTAAIA*
BS01331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| skd-PF | 2601 | CG9936-PF | 1662..2601 | 1..940 | 4992 | 100 | Plus |
| skd-PE | 2768 | CG9936-PE | 1829..2768 | 1..940 | 4992 | 100 | Plus |
| skd-PD | 2618 | CG9936-PD | 1679..2618 | 1..940 | 4992 | 100 | Plus |
| skd-PC | 2618 | CG9936-PC | 1679..2618 | 1..940 | 4992 | 100 | Plus |
