Clone Sequence Records
BS01334.3prime Sequence
871 bp (814 high quality bases) assembled on 2005-11-29
> BS01334.3prime
ATGGTCTAGAAAGCTTCTACTCCATCTTCACCACTGTTTCCCGGTCAACG
CCGAACTTATGCATCGCATAGTTGGTCACATGCTGCTCATGTTGACCCAA
GAGGGCGGCAGTCTGCTGCTGCAGCTGTTGCTGCTGCTGCTGATGTCTCT
GGAAGGCGGCCAGTTCGTAGTGCTCGTCCAGCGATGCCGATCGGCTGAGC
ATTATCTCTCCATGTTGCTGCTGCTGATGCTGCTGCTGCTGTTGTTGCTG
TTGCGACTGATCCATCTCTTCCATCTTGATGAGAGCGGGCTGCTCATCCT
CCTCCGGAGTCAGGTAGTAGGGTGGGGAAGGTCTCGTGGGCTTGCACAGC
GTCATTCCGGCCTGGTGATACGGATTCTGCAGACTAATAATGTTGCTGTG
ACTCAGGGACGATAATGTGCTCGATGCCGTGGTCGGTGTTGAGGTGACCA
TAAGTCCCGCCGACGCTGTGGAGCAGTTGGCCTGGGAGGTGAGCGACAAG
GCCTCCGTCTTGATCGCCGCCGCTGCCGCCGCCGCTGCTGCTGCTGCTGC
CGCCGTAATGGAGTTCGGCAGCAGTTGGGCCAGCAACTGGTGGTCGCTGG
TGGAGCCGCTGTTGCTGCTGCTGCTCAGTTGCTGAGCTTGCAGATATTTC
TGTATAAGTTTGTTGTTATTCTCATTGCTACTACTATTGTTGTTGTTGTT
GTTGTTGAAGATCGAGCTGTTGTTGTTGTTGTTATTGTTATTGTGGAGCT
GGTGAGTTGGCGATGGGGTGTTGAAGATGGATGTGGGTGTGCTGGGGTGA
GTGCTGCATGCTGCACGATTGCTGCTGCTGATGCTGCTGCATGTTGAGCG
GCGACATTTGGTAGTTTGAGT
BS01334.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3992-PB | 3750 | srp-RB | 2971..3750 | 796..17 | 3875 | 99.8 | Minus |
| CG3992-PA | 3795 | srp-RA | 3016..3795 | 796..17 | 3875 | 99.8 | Minus |
| CG3992-PD | 2241 | srp-RD | 1462..2241 | 796..17 | 3875 | 99.8 | Minus |
| CG3992-PB | 3750 | srp-RB | 2897..2973 | 871..795 | 385 | 100 | Minus |
| CG3992-PA | 3795 | srp-RA | 2942..3018 | 871..795 | 385 | 100 | Minus |
| CG3992-PD | 2241 | srp-RD | 1388..1464 | 871..795 | 385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RF | 3274 | CG3992-RF | 1843..2696 | 871..17 | 4235 | 99.8 | Minus |
| srp-RE | 3796 | CG3992-RE | 2365..3218 | 871..17 | 4235 | 99.8 | Minus |
| srp-RD | 3841 | CG3992-RD | 2410..3263 | 871..17 | 4235 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16002650..16003503 | 871..17 | 4210 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-03 14:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2938 | 725..81 | 353 | 55.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6681..6899 | 739..522 | 309 | 64.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2539 | 769..536 | 306 | 63 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2250..2534 | 863..587 | 304 | 62.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..6923 | 769..528 | 287 | 61.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6944 | 753..519 | 286 | 61.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2666 | 846..591 | 255 | 62.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2938 | 846..524 | 221 | 57.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..7106 | 839..501 | 219 | 57.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2466 | 653..522 | 165 | 63.6 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 966..1163 | 744..546 | 146 | 58.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6416..6572 | 746..587 | 143 | 59.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1526..1591 | 653..589 | 120 | 66.7 | Minus |
BS01334.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:06:59 Download gff for
BS01334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-PB | 2897..3750 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:45 Download gff for
BS01334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3992-PD | 1388..2241 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:10:13 Download gff for
BS01334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RD | 2410..3265 | 13..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:56:55 Download gff for
BS01334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RD | 2410..3265 | 13..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:56:55 Download gff for
BS01334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16002650..16003505 | 13..871 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:10:13 Download gff for
BS01334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11828372..11829227 | 13..871 | 99 | | Minus |
BS01334.5prime Sequence
908 bp (790 high quality bases) assembled on 2005-11-29
> BS01334.5prime
GAAGTTATCAGTCGACATGCGGAACAACTTTGCGTTCTACAGCGTCTACA
CCGGAGGCGGTGGCGGAGTGGGCGTGGGCATGACTAGCCACGAGCATTTG
GCAGCGGCGGCGGCAGCGGCAGCAGCAGTGGCCCAGGGCACCACACCCAA
CATAGACGAGGTCATCCAGGACACGCTGAAGGACGAGTGCTTCGAGGATG
GCCACAGCACCGATTACCATGTGCTGACCTCCGTGTCCGATATGCATACG
CTAAAGGACTCCAGTCCCTATGCCCTCACCCACGAGCAACTCCACCAGCA
GCAGCACCATCACCAGCAGCAACTGCATCACCATCAGCAGCAGCAGCAAC
AACTTTACCACCAGCAACAGCAGCAGCAGCAGCAGCAACAACATCATCAC
CACCACAACAACTCCACCAGTTCGGCGGGCGGGGACTCCCCGTCGTCCTC
GCACGCACTGTCCACCCTGCAGAGCTTCACCCAGCTGACCAGCGCCACCC
AGCGTGATAGCCTCTCGCCGGAGAATGACGCCTACTTTGCGGCCGCCCAG
CTCGGCAGCAGCTTGCAGAACAGCTCTGTTTATGCTGGCTCGTTGCTTAC
TCAGACTGCCAATGGCATTCAGTACGGCATGCAGTCCCCCAACCAAACAC
AAGCCCATCTCCAGCAGCAGCACCATCAGCAGCAGCAGCAACAACATCAG
CAACACCAGCAGCAGCAACTGCAGCAGCAGCAGCAGCAACATCACCACAA
TCAACACCAGCACCACAACTCCAGCAGCAGCAGTCCGGGGCCAGCGGGTC
TGCACCACTCGAGCTCCTCGGCGGGCACGGCGGCAGCGGTGGCTGCGGCA
ACGGCGGCGGTCAATGGACACAACAGCTCCTTGGAGGACGGCTACGGATC
GCCAAGGA
BS01334.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3992-PB | 3750 | srp-RB | 943..1834 | 17..908 | 4435 | 99.8 | Plus |
| CG3992-PA | 3795 | srp-RA | 943..1834 | 17..908 | 4435 | 99.8 | Plus |
| CG3992-PD | 2241 | srp-RD | 1..280 | 629..908 | 1375 | 99.6 | Plus |
| CG14307-PK | 2118 | fru-RK | 1930..1970 | 362..402 | 180 | 97.5 | Plus |
| CG14307-PG | 2391 | fru-RG | 2203..2243 | 362..402 | 180 | 97.5 | Plus |
| CG1597-PA | 2661 | CG1597-RA | 184..211 | 101..128 | 140 | 100 | Plus |
| CG18599-PA | 1428 | CG18599-RA | 253..284 | 368..399 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RA | 4459 | CG3992-RA | 1029..1920 | 17..908 | 4445 | 99.9 | Plus |
| srp-RB | 4414 | CG3992-RB | 1029..1920 | 17..908 | 4445 | 99.9 | Plus |
| srp-RG | 3377 | CG3992-RG | 968..1302 | 574..908 | 1660 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15995168..15995724 | 17..573 | 2785 | 100 | Plus |
| 3R | 32079331 | 3R | 15999322..15999660 | 570..908 | 1680 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-10 23:09:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 1950..2032 | 333..415 | 109 | 62.4 | Plus |
BS01334.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:00 Download gff for
BS01334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-PB | 939..1833 | 9..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:46 Download gff for
BS01334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3992-PB | 939..1833 | 9..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:16:55 Download gff for
BS01334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RB | 1025..1919 | 9..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:26:56 Download gff for
BS01334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RB | 1025..1919 | 9..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:26:56 Download gff for
BS01334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15995164..15995724 | 9..573 | 99 | -> | Plus |
| 3R | 15999326..15999659 | 574..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:16:55 Download gff for
BS01334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11820886..11821446 | 9..573 | 99 | -> | Plus |
| arm_3R | 11825048..11825381 | 574..907 | 99 | | Plus |
BS01334.complete Sequence
2885 bp assembled on 2008-08-15
GenBank Submission: FJ634599
> BS01334.complete
GAAGTTATCAGTCGACATGCGGAACAACTTTGCGTTCTACAGCGTCTACA
CCGGAGGCGGTGGCGGAGTGGGCGTGGGCATGACTAGCCACGAGCATTTG
GCAGCGGCGGCGGCAGCGGCAGCAGCAGTGGCCCAGGGCACCACACCCAA
CATAGACGAGGTCATCCAGGACACGCTGAAGGACGAGTGCTTCGAGGATG
GCCACAGCACCGATTACCATGTGCTGACCTCCGTGTCCGATATGCATACG
CTAAAGGACTCCAGTCCCTATGCCCTCACCCACGAGCAACTCCACCAGCA
GCAGCACCATCACCAGCAGCAACTGCATCACCATCAGCAGCAGCAGCAAC
AACTTTACCACCAGCAACAGCAGCAGCAGCAGCAGCAACAACATCATCAC
CACCACAACAACTCCACCAGTTCGGCGGGCGGGGACTCCCCGTCGTCCTC
GCACGCACTGTCCACCCTGCAGAGCTTCACCCAGCTGACCAGCGCCACCC
AGCGTGATAGCCTCTCGCCGGAGAATGACGCCTACTTTGCGGCCGCCCAG
CTCGGCAGCAGCTTGCAGAACAGCTCTGTTTATGCTGGCTCGTTGCTTAC
TCAGACTGCCAATGGCATTCAGTACGGCATGCAGTCCCCCAACCAAACAC
AAGCCCATCTCCAGCAGCAGCACCATCAGCAGCAGCAGCAACAACATCAG
CAACACCAGCAGCAGCAACTGCAGCAGCAGCAGCAGCAACATCACCACAA
TCAACACCAGCACCACAACTCCAGCAGCAGCAGTCCGGGGCCAGCGGGTC
TGCACCACTCGAGCTCCTCGGCGGCCACGGCGGCAGCGGTGGCTGCGGCA
ACGGCGGCGGTCAATGGACACAACAGCTCCTTGGAGGACGGCTACGGATC
GCCAAGGAGCAGCCACAGTGGCGGCGGGGGCGGTGGTACTCTGCCAGCCT
TCCAGCGGATCGCATACCCCAACAGTGGCTCCGTGGAACGTTACGCTCCG
ATAACCAATTATCGCGGTCAGAACGATACCTGGTTCGATCCGTTAAGCTA
CGCCACCTCCTCTTCCGGGCAGGCGCAGTTGGGCGTCGGTGTTGGAGCCG
GAGTGGTCTCGAATGTGATACGGAATGGGCGGGCCATTTCGGCTGCTAAT
GCAGCAGCTGCAGCCGCCGCGGATGGAACCACTGGACGCGTAGATCCTGG
AACCTTTCTTTCCGCCTCGGCATCGTTGTCAGCAATGGCCGCTGAATCAG
GCGGGGATTTCTATAAACCCAACTCATTTAATGTGGGCGGCGGTGGCCGT
AGTAAGGCTAACACGAGTGGTGCCGCCAGCTCCTACTCCTGTCCAGGCTC
GAATGCAACCTCGGCGGCGACTTCGGCGGTGGCGTCGGGAACGGCAGCAA
CTGCAGCGACGACGCTCGACGAGCACGTTAGTCGCGCCAATTCGAGACGC
TTGAGCGCCTCAAAGCGAGCCGGACTTTCCTGCTCCAACTGCCACACCAC
CCACACTTCGTTGTGGCGCCGCAATCCCGCCGGAGAGCCCGTCTGCAATG
CATGCGGCCTGTACTATAAGCTCCACAGTGTCCCACGGCCACTGACCATG
AAAAAGGACACCATTCAGAAACGCAAGCGCAAGCCGAAAGGAACGAAGAG
CGAGAAGTCCAAGTCAAAGTCAAAGAACGCTTTGAATGCCATCATGGAAA
GTGGTTCATTGGTGACCAATTGCCATAACGTTGGTGTCGTCCTGGACAGC
AGCCAGATGGATGTCAATGACGATATGAAACCACAGCTCGATCTGAAACC
ATACAACTCATACTCATCGCAGCCGCAGCAACAGCTTCCACAGTACCAGC
AGCAGCAGCAGCTGCTAATGGCTGATCAGCACTCATCGGCGGCCAGCTCG
CCCCATAGCATGGGTTCCACCTCATTGTCGCCATCAGCCATGTCACATCA
GCATCAGACTCATCCACATCAGCAGCAACAGCAGCAGCTCTGTTCCGGGC
TGGACATGTCGCCCAACTCAAACTACCAAATGTCGCCGCTCAACATGCAG
CAGCATCAGCAGCAGCAATCGTGCAGCATGCAGCACTCACCCAGCACACC
CACATCCATCTTCAACACCCCATCGCCAACTCACCAGCTCCACAATAACA
ATAACAACAACAACAACAGCTCGATCTTCAACAACAACAACAACAACAAT
AGTAGTAGCAATGAGAATAACAACAAACTTATACAGAAATATCTGCAAGC
TCAGCAACTGAGCAGCAGCAGCAACAGCGGCTCCACCAGCGACCACCAGT
TGCTGGCCCAACTGCTGCCGAACTCCATTACGGCGGCAGCAGCAGCAGCA
GCGGCGGCGGCAGCGGCGGCGATCAAGACGGAGGCCTTGTCGCTCACCTC
CCAGGCCAACTGCTCCACAGCGTCGGCGGGACTTATGGTCACCTCAACAC
CGACCACGGCATCGAGCACATTATCGTCCCTGAGTCACAGCAACATTATT
AGTCTGCAGAATCCGTATCACCAGGCCGGAATGACGCTGTGCAAGCCCAC
GAGACCTTCCCCACCCTACTACCTGACTCCGGAGGAGGATGAGCAGCCCG
CTCTCATCAAGATGGAAGAGATGGATCAGTCGCAACAGCAACAACAGCAG
CAGCAGCATCAGCAGCAGCAACATGGAGAGATAATGCTCAGCCGATCGGC
ATCGCTGGACGAGCACTACGAACTGGCCGCCTTCCAGAGACATCAGCAGC
AGCAGCAACAGCTGCAGCAGCAGACTGCCGCCCTCTTGGGTCAACATGAG
CAGCATGTGACCAACTATGCGATGCATAAGTTCGGCGTTGACCGGGAAAC
AGTGGTGAAGATGGAGTAGAAGCTTTCTAGACCAT
BS01334.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RA | 3795 | CG3992-PA | 943..3795 | 17..2869 | 14235 | 99.9 | Plus |
| srp-RF | 2241 | CG3992-PF | 1..2241 | 629..2869 | 11175 | 99.9 | Plus |
| srp-RD | 2241 | CG3992-PD | 1..2241 | 629..2869 | 11175 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RA | 4459 | CG3992-RA | 1029..3881 | 17..2869 | 14235 | 99.9 | Plus |
| srp-RF | 3274 | CG3992-RF | 401..2696 | 574..2869 | 11450 | 99.9 | Plus |
| srp-RD | 3841 | CG3992-RD | 968..3263 | 574..2869 | 11450 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16002406..16003503 | 1772..2869 | 5475 | 99.9 | Plus |
| 3R | 32079331 | 3R | 15995168..15995724 | 17..573 | 2785 | 100 | Plus |
| 3R | 32079331 | 3R | 15999322..15999773 | 570..1021 | 2260 | 100 | Plus |
| 3R | 32079331 | 3R | 16001189..16001406 | 1236..1453 | 1090 | 100 | Plus |
| 3R | 32079331 | 3R | 15999843..16000059 | 1019..1235 | 1070 | 99.5 | Plus |
| 3R | 32079331 | 3R | 16001751..16001916 | 1453..1618 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 16002167..16002323 | 1616..1772 | 785 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:50:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2938 | 2161..2805 | 353 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6681..6899 | 2147..2364 | 309 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2539 | 2117..2350 | 306 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2666 | 1912..2295 | 305 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2250..2534 | 2024..2299 | 292 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..6923 | 2117..2358 | 287 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6944 | 2133..2367 | 286 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2938 | 1779..2362 | 271 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2845 | 1932..2375 | 236 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..7106 | 2048..2385 | 207 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6914 | 1820..1988 | 204 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..7091 | 1946..2293 | 198 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6697..6955 | 1928..2202 | 197 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..7092 | 1931..2313 | 184 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..7181 | 1945..2352 | 180 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6890 | 1819..1988 | 175 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2466 | 2233..2364 | 165 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6711..7074 | 1836..2210 | 162 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6416..6572 | 2140..2299 | 143 | 59.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1124 | 1945..1988 | 139 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2627..2989 | 1819..2168 | 136 | 54.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1102..1145 | 1945..1988 | 130 | 77.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 960..1012 | 1937..1989 | 121 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1526..1591 | 2233..2297 | 120 | 66.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7943..8022 | 1949..2027 | 118 | 65.9 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9387..9466 | 1949..2027 | 118 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1587 | 1946..1988 | 116 | 74.4 | Plus |
BS01334.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:12 Download gff for
BS01334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RA | 1023..3881 | 9..2873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:54 Download gff for
BS01334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RA | 1029..3881 | 17..2869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:52 Download gff for
BS01334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RA | 1027..3879 | 17..2869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:49 Download gff for
BS01334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RA | 1029..3881 | 17..2869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:49 Download gff for
BS01334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15995168..15995724 | 17..573 | 100 | -> | Plus |
| 3R | 15999326..15999773 | 574..1021 | 100 | -> | Plus |
| 3R | 15999846..16000059 | 1022..1235 | 99 | -> | Plus |
| 3R | 16001189..16001406 | 1236..1453 | 100 | -> | Plus |
| 3R | 16001752..16001916 | 1454..1618 | 100 | -> | Plus |
| 3R | 16002170..16002323 | 1619..1772 | 100 | -> | Plus |
| 3R | 16002407..16003503 | 1773..2869 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:54 Download gff for
BS01334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11820890..11821446 | 17..573 | 100 | -> | Plus |
| arm_3R | 11825048..11825495 | 574..1021 | 100 | -> | Plus |
| arm_3R | 11825568..11825781 | 1022..1235 | 99 | -> | Plus |
| arm_3R | 11826911..11827128 | 1236..1453 | 100 | -> | Plus |
| arm_3R | 11827474..11827638 | 1454..1618 | 100 | -> | Plus |
| arm_3R | 11827892..11828045 | 1619..1772 | 100 | -> | Plus |
| arm_3R | 11828129..11829225 | 1773..2869 | 99 | | Plus |
BS01334.pep Sequence
Translation from 16 to 2868
> BS01334.pep
MRNNFAFYSVYTGGGGGVGVGMTSHEHLAAAAAAAAAVAQGTTPNIDEVI
QDTLKDECFEDGHSTDYHVLTSVSDMHTLKDSSPYALTHEQLHQQQHHHQ
QQLHHHQQQQQQLYHQQQQQQQQQQHHHHHNNSTSSAGGDSPSSSHALST
LQSFTQLTSATQRDSLSPENDAYFAAAQLGSSLQNSSVYAGSLLTQTANG
IQYGMQSPNQTQAHLQQQHHQQQQQQHQQHQQQQLQQQQQQHHHNQHQHH
NSSSSSPGPAGLHHSSSSAATAAAVAAATAAVNGHNSSLEDGYGSPRSSH
SGGGGGGTLPAFQRIAYPNSGSVERYAPITNYRGQNDTWFDPLSYATSSS
GQAQLGVGVGAGVVSNVIRNGRAISAANAAAAAAADGTTGRVDPGTFLSA
SASLSAMAAESGGDFYKPNSFNVGGGGRSKANTSGAASSYSCPGSNATSA
ATSAVASGTAATAATTLDEHVSRANSRRLSASKRAGLSCSNCHTTHTSLW
RRNPAGEPVCNACGLYYKLHSVPRPLTMKKDTIQKRKRKPKGTKSEKSKS
KSKNALNAIMESGSLVTNCHNVGVVLDSSQMDVNDDMKPQLDLKPYNSYS
SQPQQQLPQYQQQQQLLMADQHSSAASSPHSMGSTSLSPSAMSHQHQTHP
HQQQQQQLCSGLDMSPNSNYQMSPLNMQQHQQQQSCSMQHSPSTPTSIFN
TPSPTHQLHNNNNNNNNSSIFNNNNNNNSSSNENNNKLIQKYLQAQQLSS
SSNSGSTSDHQLLAQLLPNSITAAAAAAAAAAAAAIKTEALSLTSQANCS
TASAGLMVTSTPTTASSTLSSLSHSNIISLQNPYHQAGMTLCKPTRPSPP
YYLTPEEDEQPALIKMEEMDQSQQQQQQQQHQQQQHGEIMLSRSASLDEH
YELAAFQRHQQQQQQLQQQTAALLGQHEQHVTNYAMHKFGVDRETVVKME
*
BS01334.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-PA | 1264 | CG3992-PA | 315..1264 | 1..950 | 4936 | 100 | Plus |
| srp-PB | 1249 | CG3992-PB | 315..1249 | 1..950 | 4536 | 93.6 | Plus |
| srp-PF | 746 | CG3992-PF | 1..746 | 205..950 | 3862 | 100 | Plus |
| srp-PD | 746 | CG3992-PD | 1..746 | 205..950 | 3862 | 100 | Plus |
| srp-PE | 731 | CG3992-PE | 1..731 | 205..950 | 3462 | 91.8 | Plus |
| srp-PA | 1264 | CG3992-PA | 143..361 | 143..393 | 168 | 29 | Plus |
| srp-PB | 1249 | CG3992-PB | 143..361 | 143..393 | 168 | 29 | Plus |
