Clone Sequence Records
BS01336.3prime Sequence
845 bp (796 high quality bases) assembled on 2005-11-29
> BS01336.3prime
ATGGTCTAGAAAGCTTTCAAGTTGGGTTAACCAGTAGGGCGTAAGCCTGT
GGATCCACTGCCTGCAGGGCACGAGCAAATGTGGAAAACTCTACAGAGGC
TCCTTTTCTTTTCACGTGATCCAACAGATCCTCCGCGCCCAGCCATATAA
AGGCGAACTGCTTCAGATGCGTCTGGCGGGCTAGTTGCATCCATTTCCGA
TCTTGGGGATCGGACCCATGTCCCAAAGGCTGATTCAGCAGCGAACAGAG
CCGGTCGTAAATGAATTTGTTTTTGAGCAGCAACTGCAATTTGTTGTTGT
CCATTTCGGTGTCTCTACTGGATTCATCTTTCTGTCTTCTTGGACCACTA
CTTAGGTCCAACTCCACGGAATCCTCGTCCTTTGTTTCGATGTCCATCTC
CTCGGACTTGATCTCCAGCTGACCAGCATCGCTACTTTCGTCCGACGATG
AATCGATCTCCTCCTTGACCTTACATGGAATCCAGGTCATGGCCAGTTCT
CCCTTCTCCGGATACACATTCTTCAGCAGCTGGACCACCCGGTCATTTGC
CTTGCGTTCGGCCAATTCCAAGGGAGTATGGCCGGCTGCATTTTGTGCCT
GCAGGATGTCGGTAAGGTTTTCATTTTGGGCATCCAGAATGAGCACCAAT
AGCTCCACACTTTGCTCCAGAACTGCCATGTGGAGTGCATTATTACCATC
CATTGTGTTGGCCACGCTAATCGAGGTCCGATCATAGCTGATCAGTTTCT
TGGCCACATCGTACTTGTTCTGTCGAATGGCCATGTGCAAAGGCGTCAGA
CCATCGTCGTTCGTTAGCGAGAGGTCCAATTGTACGGTTGGCACT
BS01336.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11992-PC | 2916 | Rel-RC | 2088..2916 | 845..17 | 4145 | 100 | Minus |
| CG11992-PD | 2580 | Rel-RD | 1752..2580 | 845..17 | 4145 | 100 | Minus |
| CG11992-PB | 2916 | Rel-RB | 2088..2916 | 845..17 | 4145 | 100 | Minus |
| CG11992-PA | 2916 | Rel-RA | 2088..2916 | 845..17 | 4145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:31:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rel-RA | 3499 | CG11992-RA | 2630..3458 | 845..17 | 4145 | 100 | Minus |
| Rel-RB | 3351 | CG11992-RB | 2482..3310 | 845..17 | 4145 | 100 | Minus |
| Rel-RD | 2722 | CG11992-RD | 1853..2681 | 845..17 | 4145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9044224..9045052 | 17..845 | 4145 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:31:46 has no hits.
BS01336.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:04 Download gff for
BS01336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-PB | 2088..2916 | 17..845 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:50 Download gff for
BS01336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11992-PA | 2088..2916 | 17..845 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:15:00 Download gff for
BS01336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RD | 1853..2683 | 11..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:46:31 Download gff for
BS01336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RD | 1853..2683 | 11..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:46:31 Download gff for
BS01336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9044222..9045052 | 11..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:15:00 Download gff for
BS01336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4869944..4870774 | 11..845 | 99 | | Plus |
BS01336.5prime Sequence
808 bp (763 high quality bases) assembled on 2005-11-29
> BS01336.5prime
GAAGTTATCAGTCGACATGAACATGAATCAGTACTACGACCTGGACAATG
GGAAAAATGTGATGTTTATGAACGATGCATCCAGCACCAGTGGCTATAGC
AGCAGTACATCACCCAACTCCACCAACCGATCCTTTTCACCAGCCCACTC
CCCGAAAACCATGGAACTGCAAACGGACTTCGCCAATCTTAATTTGCCCG
GCGGCAATTCACCACACCAGCCGCCAATGGCAAACTCACCATACCAGAAT
CAGCTGTTGAACAACGGCGGAATTTGCCAATTGGGTGCTACCAATTTAAT
AAACTCCACTGGCGTTAGTTTCGGCGTTGCTAATGTCACCAGTTTTGGCA
ACATGTACATGGATCACCAGTACTTTGTGCCCGCTCCGGCCACTGTGCCA
CCGTCCCAAAACTTTGGATACCATCAAAATGGCCTGGCATCTGACGGCGA
TATCAAACACGTGCCGCAGCTGCGGATCGTTGAGCAACCGGTGGAGAAGT
TCCGCTTTCGGTACAAGAGCGAGATGCATGGAACACATGGATCGCTAAAT
GGCGCCAATTCGAAGCGGACGCCCAAAACCTTCCCGGAGGTTACACTGTG
CAACTACGATGGACCCGCCGTCATCCGGTGCAGTTTGTTCCAAACTAACT
TGGACAGCCCACATTCCCATCAGCTGGTCGTGCGCAAGGACGATCGGGAT
GTGTGCGATCCGCATGATTTGCACGTGTCCAAGGAGCGCGGCTATGTGGC
GCAATTTATCAACATGGGCATCATACACACCGCCCAGAAGTACATATTCG
AGGAACTG
BS01336.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11992-PC | 2916 | Rel-RC | 1..792 | 17..808 | 3935 | 99.8 | Plus |
| CG11992-PB | 2916 | Rel-RB | 1..792 | 17..808 | 3935 | 99.8 | Plus |
| CG11992-PA | 2916 | Rel-RA | 1..792 | 17..808 | 3935 | 99.8 | Plus |
| CG11992-PD | 2580 | Rel-RD | 1..456 | 353..808 | 2255 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rel-RA | 3499 | CG11992-RA | 543..1334 | 17..808 | 3945 | 99.9 | Plus |
| Rel-RB | 3351 | CG11992-RB | 395..1186 | 17..808 | 3945 | 99.9 | Plus |
| Rel-RC | 3042 | CG11992-RC | 86..877 | 17..808 | 3945 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:03:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9046644..9047435 | 808..17 | 3945 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:03:24 has no hits.
BS01336.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:05 Download gff for
BS01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-PB | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:52 Download gff for
BS01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11992-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:55:57 Download gff for
BS01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RC | 82..877 | 14..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:37:50 Download gff for
BS01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RC | 82..877 | 14..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:37:50 Download gff for
BS01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9046644..9047439 | 14..808 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:55:57 Download gff for
BS01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4872366..4873161 | 14..808 | 99 | | Minus |
BS01336.complete Sequence
2948 bp assembled on 2008-08-15
GenBank Submission: FJ634600
> BS01336.complete
GAAGTTATCAGTCGACATGAACATGAATCAGTACTACGACCTGGACAATG
GGAAAAATGTGATGTTTATGAACGATGCATCCAGCACCAGTGGCTATAGC
AGCAGTACATCACCCAACTCCACCAACCGATCCTTTTCACCAGCCCACTC
CCCGAAAACCATGGAACTGCAAACGGACTTCGCCAATCTTAATTTGCCCG
GCGGCAATTCACCACACCAGCCGCCAATGGCAAACTCACCATACCAGAAT
CAGCTGTTGAACAACGGCGGAATTTGCCAATTGGGTGCTACCAATTTAAT
AAACTCCACTGGCGTTAGTTTCGGCGTTGCTAATGTCACCAGTTTTGGCA
ACATGTACATGGATCACCAGTACTTTGTGCCCGCTCCGGCCACTGTGCCA
CCGTCCCAAAACTTTGGATACCATCAAAATGGCCTGGCATCTGACGGCGA
TATCAAACACGTGCCGCAGCTGCGGATCGTTGAGCAACCGGTGGAGAAGT
TCCGCTTTCGGTACAAGAGCGAGATGCATGGAACACATGGATCGCTAAAT
GGCGCCAATTCGAAGCGGACGCCCAAAACCTTCCCGGAGGTTACACTGTG
CAACTACGATGGACCCGCCGTCATCCGGTGCAGTTTGTTCCAAACTAACT
TGGACAGCCCACATTCCCATCAGCTGGTCGTGCGCAAGGACGATCGGGAT
GTGTGCGATCCGCATGATTTGCACGTGTCCAAGGAGCGCGGCTATGTGGC
GCAATTTATCAACATGGGCATCATACACACCGCCAAGAAGTACATATTCG
AGGAACTGTGCAAGAAGAAGCAGGATCGCCTGGTCTTTCAGATGAACCGC
CGCGAGTTGTCCCACAAACAGCTACAGGAACTGCATCAGGAGACAGAGCG
TGAGGCCAAGGACATGAACTTGAACCAGGTGCGGCTCTGCTTTGAGGCCT
TTAAAATTGAGGACAACGGCGCATGGGTTCCACTTGCACCGCCTGTATAC
AGCAATGCAATCAATAACCGCAAGTCGGCACAAACTGGAGAGCTTCGCAT
CGTCCGCCTGAGCAAACCCACTGGCGGGGTGATGGGCAACGATGAGCTTA
TTCTACTGGTGGAAAAGGTCAGCAAGAAGAACATTAAAGTGAGGTTCTTC
GAGGAGGATGAGGACGGGGAAACCGTGTGGGAGGCATACGCAAAGTTCCG
CGAATCGGATGTACACCACCAATATGCCATTGTGTGCCAGACGCCTCCGT
ACAAAGATAAGGACGTGGACCGCGAGGTCAACGTGTACATCGAGCTCATT
CGTCCCTCCGACGATGAGCGCTCATTCCCGGCGCTGCCCTTCCGCTACAA
GCCACGGAGCGTAATTGTGTCGAGGAAACGCCGACGAACCGGGTCCTCTG
CCAATAGCAGCAGTTCGGGAACAGAAAGCTCTAATAACTCGCTGGATCTG
CCCAAAACGCTGGGCTTGGCGCAGCCACCAAATGGCTTGCCAAACCTTTC
ACAGCATGATCAGACTATAAGTGAGGAGTTCGGACGCGAAAAGCATCTAA
ATGAATTTATTGCTTCCGAAGATTTCCGCAAACTTATCGAGCACAACTCT
TCTGATCTCGAGAAGATCTGCCAGTTAGACATGGGAGAGTTGCAGCACGA
TGGTCATAACCGGGCGGAAGTGCCATCGCATCGAAATCGTACAATTAAAT
GCTTGGATGACTTATTCGAAATTTACAAACAGGACCGCATATCGCCAATA
AAAATCTCGCACCACAAAGTGGAGAAGTGGTTTATCGAGCATGCTCTGAA
TAACTACAATAGAGACACGCTCCTGCACGAAGTGATCAGCCACAAAAAGG
ACAAACTGAAGCTGGCCATCCAGACGATACAGGTGATGAACTACTTCAAT
CTGAAAGATGTGGTCAATAGCACTTTGAATGCGGACGGTGATAGTGCCCT
GCATGTGGCGTGCCAGCAAGACCGAGCGCACTACATACGACCTTTGCTGG
GTATGGGATGCAATCCAAATCTGAAGAATAATGCCGGAAATACCCCACTG
CATGTGGCCGTCAAGGAGGAGCACTTAAGCTGCGTGGAAAGCTTCCTTAA
TGGAGTGCCAACCGTACAATTGGACCTCTCGCTAACGAACGACGATGGTC
TGACGCCTTTGCACATGGCCATTCGACAGAACAAGTACGATGTGGCCAAG
AAACTGATCAGCTATGATCGGACCTCGATTAGCGTGGCCAACACAATGGA
TGGTAATAATGCACTCCACATGGCAGTTCTGGAGCAAAGTGTGGAGCTAT
TGGTGCTCATTCTGGATGCCCAAAATGAAAACCTTACCGACATCCTGCAG
GCACAAAATGCAGCCGGCCATACTCCCTTGGAATTGGCCGAACGCAAGGC
AAATGACCGGGTGGTCCAGCTGCTGAAGAATGTGTATCCGGAGAAGGGAG
AACTGGCCATGACCTGGATTCCATGTAAGGTCAAGGAGGAGATCGATTCA
TCGTCGGACGAAAGTAGCGATGCTGGTCAGCTGGAGATCAAGTCCGAGGA
GATGGACATCGAAACAAAGGACGAGGATTCCGTGGAGTTGGACCTAAGTA
GTGGTCCAAGAAGACAGAAAGATGAATCCAGTAGAGACACCGAAATGGAC
AACAACAAATTGCAGTTGCTGCTCAAAAACAAATTCATTTACGACCGGCT
CTGTTCGCTGCTGAATCAGCCTTTGGGACATGGGTCCGATCCCCAAGATC
GGAAATGGATGCAACTAGCCCGCCAGACGCATCTGAAGCAGTTCGCCTTT
ATATGGCTGGGCGCGGAGGATCTGTTGGATCACGTGAAAAGAAAAGGAGC
CTCTGTAGAGTTTTCCACATTTGCTCGTGCCCTGCAGGCAGTGGATCCAC
AGGCTTACGCCCTACTGGTTAACCCAACTTGAAAGCTTTCTAGACCAT
BS01336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rel-RA | 2916 | CG11992-PA | 1..2916 | 17..2932 | 14580 | 100 | Plus |
| Rel-RB | 2916 | CG11992-PB | 1..2916 | 17..2932 | 14580 | 100 | Plus |
| Rel-RC | 2916 | CG11992-PC | 1..2916 | 17..2932 | 14580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rel-RA | 3499 | CG11992-RA | 543..3458 | 17..2932 | 14580 | 100 | Plus |
| Rel-RB | 3351 | CG11992-RB | 395..3310 | 17..2932 | 14580 | 100 | Plus |
| Rel-RC | 3042 | CG11992-RC | 86..3001 | 17..2932 | 14580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:03:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9044224..9046229 | 2932..927 | 10030 | 100 | Minus |
| 3R | 32079331 | 3R | 9046521..9047435 | 931..17 | 4575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:03:23 has no hits.
BS01336.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:39 Download gff for
BS01336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RA | 539..3460 | 14..2938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:11 Download gff for
BS01336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RC | 86..3000 | 17..2931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:32 Download gff for
BS01336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RA | 543..3457 | 17..2931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:51 Download gff for
BS01336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RC | 86..3000 | 17..2931 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:51 Download gff for
BS01336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9044225..9046227 | 929..2931 | 100 | <- | Minus |
| 3R | 9046524..9047435 | 17..928 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:11 Download gff for
BS01336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4869947..4871949 | 929..2931 | 100 | <- | Minus |
| arm_3R | 4872246..4873157 | 17..928 | 100 | | Minus |
BS01336.pep Sequence
Translation from 16 to 2931
> BS01336.pep
MNMNQYYDLDNGKNVMFMNDASSTSGYSSSTSPNSTNRSFSPAHSPKTME
LQTDFANLNLPGGNSPHQPPMANSPYQNQLLNNGGICQLGATNLINSTGV
SFGVANVTSFGNMYMDHQYFVPAPATVPPSQNFGYHQNGLASDGDIKHVP
QLRIVEQPVEKFRFRYKSEMHGTHGSLNGANSKRTPKTFPEVTLCNYDGP
AVIRCSLFQTNLDSPHSHQLVVRKDDRDVCDPHDLHVSKERGYVAQFINM
GIIHTAKKYIFEELCKKKQDRLVFQMNRRELSHKQLQELHQETEREAKDM
NLNQVRLCFEAFKIEDNGAWVPLAPPVYSNAINNRKSAQTGELRIVRLSK
PTGGVMGNDELILLVEKVSKKNIKVRFFEEDEDGETVWEAYAKFRESDVH
HQYAIVCQTPPYKDKDVDREVNVYIELIRPSDDERSFPALPFRYKPRSVI
VSRKRRRTGSSANSSSSGTESSNNSLDLPKTLGLAQPPNGLPNLSQHDQT
ISEEFGREKHLNEFIASEDFRKLIEHNSSDLEKICQLDMGELQHDGHNRA
EVPSHRNRTIKCLDDLFEIYKQDRISPIKISHHKVEKWFIEHALNNYNRD
TLLHEVISHKKDKLKLAIQTIQVMNYFNLKDVVNSTLNADGDSALHVACQ
QDRAHYIRPLLGMGCNPNLKNNAGNTPLHVAVKEEHLSCVESFLNGVPTV
QLDLSLTNDDGLTPLHMAIRQNKYDVAKKLISYDRTSISVANTMDGNNAL
HMAVLEQSVELLVLILDAQNENLTDILQAQNAAGHTPLELAERKANDRVV
QLLKNVYPEKGELAMTWIPCKVKEEIDSSSDESSDAGQLEIKSEEMDIET
KDEDSVELDLSSGPRRQKDESSRDTEMDNNKLQLLLKNKFIYDRLCSLLN
QPLGHGSDPQDRKWMQLARQTHLKQFAFIWLGAEDLLDHVKRKGASVEFS
TFARALQAVDPQAYALLVNPT*
BS01336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rel-PA | 971 | CG11992-PA | 1..971 | 1..971 | 5092 | 100 | Plus |
| Rel-PB | 971 | CG11992-PB | 1..971 | 1..971 | 5092 | 100 | Plus |
| Rel-PC | 971 | CG11992-PC | 1..971 | 1..971 | 5092 | 100 | Plus |
| Rel-PD | 859 | CG11992-PD | 1..859 | 113..971 | 4497 | 100 | Plus |
| Dif-PD | 667 | CG6794-PD | 61..385 | 131..474 | 415 | 35.2 | Plus |
