Clone BS01340 Report

Search the DGRC for BS01340

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:13
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptPcl-RA
Protein status:BS01340.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01340.3prime Sequence

825 bp (783 high quality bases) assembled on 2005-11-29

> BS01340.3prime
ATGGTCTAGAAAGCTTTCAATTTCCAAGCAATCCAATCGCCGTTGTCGCT
GTATCTCCGCCCCACTCCACCAGGTACTGGACCTGTCCATTTCCCATGCG
CCGCTTGGCCCGAATGGCAAAGGGCTCACCAGCATCTATGCGATTCATAG
CGCCACCAAAGTACTTGTTCACCGACTGCTTCAAGTCCAGCATGGAATGT
CCTGGGGCTCCAATGCCGTTGCTGCTGCTGCTGGTTGCCGTCGAGCTGGT
GGAGTTCCGGCGGCTTTGGCTGGGTGACTGCTTCTGTGGTCGCTGGCGCA
ACAGGCGCCCATGTGTCGGCTTTCCCATTGGCGGCGCGGGTGGCTGCAGA
TCTTTGGCATAGATAGGAAGGTAGTGGCTGGGTATGGGATTGATGGTGGT
GGTGCTGATGACCTCAATGGCCGTGGTCAGGCGGCGAGTGCGTCGTCTGC
GCACTTCCTGATTGGGCCCTATCGTAATGTCTTTGGCACTCAGTCTTCGC
TTGATGGTGCGCACCATGCGCGGCTGCTCCTTGGAGGTGCCCTTAAGCTT
GAAAATGCTGTTTATGATGCCATTTACTCCGACTCCAGTTCCCACAGAAA
TACTTCGTCCCTGCGACGCCTTTTTGGGAGTGGCCATAAGGAATGGATTG
TTGCGTCCCAAAAAGTTGACCGGCGGTGGTATGATGAGGTCCAACGAACT
GGTTCCCCGACTGCTGCTTGAATTCTCGTCGGATGATAGATCACAGTGAT
TGCGGCTGTTGTCATAGCGTTTGGACAATCGGAAAGCCTTGCGCTTCCGA
CTGCTATTTGCGTCCAGCAGAGGTG

BS01340.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5109-PA 3132 Pcl-RA 2324..3132 825..17 4020 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
Pcl-RB 4384 CG5109-RB 2822..3631 825..16 4035 99.9 Minus
Pcl-RA 3836 CG5109-RA 2822..3631 825..16 4035 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18138361..18138775 825..411 2060 99.8 Minus
2R 25286936 2R 18138839..18139237 414..16 1995 100 Minus
Blast to na_te.dros performed 2015-02-06 16:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6825 295..200 142 66 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6792 282..214 130 70.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1576 273..214 111 65 Minus

BS01340.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:08 Download gff for BS01340.3prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-PA 2324..3132 17..825 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:56 Download gff for BS01340.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5109-PA 2324..3132 17..825 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:19:15 Download gff for BS01340.3prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 2822..3637 10..825 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:06:00 Download gff for BS01340.3prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 2822..3637 10..825 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:06:00 Download gff for BS01340.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18138361..18138773 413..825 99 -> Minus
2R 18138841..18139243 10..412 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:19:15 Download gff for BS01340.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14025866..14026278 413..825 99 -> Minus
arm_2R 14026346..14026748 10..412 99   Minus

BS01340.5prime Sequence

840 bp (815 high quality bases) assembled on 2005-11-29

> BS01340.5prime
GAAGTTATCAGTCGACATGATGAACAACCATTTTCACTTGCAACACGATC
ATCCACCGCAGAACGTGGCACATCCGTTCATGCAACAGCCGAGTACCGCT
GTCCCATCAGCTCCTCCGGCCACCTACGGCTACTTAGCACAGCCAGCTGG
CCAGCAGCCGCAGTGGATGACCACCACCTACCAGATCCTGCCGCCCAGCG
TAGGACCTGCCACGGTGGCCAAGCGATACTATGCCACCACTGGGCCGCAG
ACCACGCATCCCACACATCCCAGCACCATCCAGATCACGAACAGTTTCGC
TCAGCAATCAACGCCACCGAAGCAACAGGCGGCAACAAGCTGCAGCCCAT
TCAAGGCCAACAACATCCGAATCATCTCGACGGCGCCAAGTGTATACAGT
CTGAATAAGCCGCCACAGGAAGCGCACTCCACATATGCTCCCGTTCAGTC
GTACTACTTGCCCAGTGGCGGTGGCCAAACTGCGGGACAAATCAATCTAC
TGGCGGCCAGCGGAACTGGCAAGCAACTGCAGCCGCCGCCGCTGGTGCCT
GTGACCAATTCCACCTCACCGCCCTCCACCGTCGTGTTAGACCGCATAAA
CATTTGCATCAATAACCACTATACGGAGACGCCCACTTCGCTAAGTTCAT
CGCTTACCACGGCCCAACAACCTTCGCCCATCATACCGGCCATCCAGCAC
AAGGCCATCCTGCCCCTCATCGACAGCAGCACGGCGGATAGCAGCAGCTG
CAGCAGCAGTTCTGTATCGAGCAGCAGTTATAGTGGTACCGCGACCACCT
CAGCAGCAGTTGTGATTGTGGATGAAGCGGATTTCACGAC

BS01340.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5109-PA 3132 Pcl-RA 1..809 17..825 3970 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
Pcl-RB 4384 CG5109-RB 499..1322 17..840 4015 99.2 Plus
Pcl-RA 3836 CG5109-RA 499..1322 17..840 4015 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18135924..18136747 17..840 4015 99.2 Plus
Blast to na_te.dros performed on 2015-02-04 04:20:10 has no hits.

BS01340.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:09 Download gff for BS01340.5prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-PA 1..824 17..840 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:15:57 Download gff for BS01340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5109-PA 1..824 17..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:10:02 Download gff for BS01340.5prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 491..1322 9..840 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:51:06 Download gff for BS01340.5prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 491..1322 9..840 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:51:06 Download gff for BS01340.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18135916..18136747 9..840 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:10:02 Download gff for BS01340.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14023421..14024252 9..840 98   Plus

BS01340.complete Sequence

3164 bp (3164 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634601

> BS01340.complete
GAAGTTATCAGTCGACATGATGAACAACCATTTTCACTTGCAACACGATC
ATCCACCGCAGAACGTGGCACATCCGTTCATGCAACAGCCGAGTACCGCT
GTCCCATCAGCTCCTCCGGCCACCTACGGCTACTTAGCACAGCCAGCTGG
CCAGCAGCCGCAGTGGATGACCACCACCTACCAGATCCTGCCGCCCAGCG
TAGGACCTGCCACGGTGGCCAAGCGATACTATGCCACCACTGGGCCGCAG
ACCACGCATCCCACACATCCCAGCACCATCCAGATCACGAACAGTTTCGC
TCAGCAATCAACGCCACCGAAGCAACAGGCGGCAACAAGCTGCAGCCCAT
TCAAGGCCAACAACATCCGAATCATCTCGACGGCGCCAAGTGTATACAGT
CTGAATAAGCCGCCACAGGAAGCGCACTCCACATATGCTCCCGTTCAGTC
GTACTACTTGCCCAGTGGCGGTGGCCAAACTGCGGGACAAATCAATCTAC
TGGCGGCCAGCGGAACTGGCAAGCAACTGCAGCCGCCGCCGCTGGTGCCT
GTGACCAATTCCACCTCACCGCCCTCCACCGTCGTGTTAGACCGCATAAA
CATTTGCATCAATAACCACTATACGGAGACGCCCACTTCGCTAAGTTCAT
CGCTTACCACGGCCCAACAACCTTCGCCCATCATACCGGCCATCCAGCAC
AAGGCCATCCTGCCCCTCATCGACAGCAGCACGGCGGATAGCAGCAGCTG
CAGCAGCAGTTCTGTATCGAGCAGCAGTTATAGTGGTACCGCGACCACCT
CAGCAGCAGTTGTGATTGTGGATGAGCCGGATTCAACGACCACAACGCCA
CAGACACCGCCAACTACGCCGGAGGCCATGAGTTCACCCGGTAAAAGTTC
GCCCTCGCCTCCGCTACTAGCCACGCAATCGCTGCTCAAAGGCGTCAACT
CAATGAAGCCAAGCTTCAAGACCGTCGAAGCAGCACCGCCAACGCCGCCA
ACACCTCCATCACCACCACCACCGCCGCCGGCACCACCAGTTGCCGCTCC
CTCGCCAGCGGTCACGTATGCGCTTCAGGAGGACGTCTTCATCAAATGCA
ATGATGGCAGATTTTACCTGGGCACCATTATTGACCAGACAAGCGATCAA
TATCTTATCCGCTTTGATGACCAGTCGGAGCAATGGTGTGAACCGGATAA
GCTGCGCAAGCTGGGTGGCGGTAGCTCGATTACCGCTGGCGGAGGCGGTG
CCTCTACCACGGAATCCACGAATACCTCCCCCAGTGGACCCATGTGCGTG
GCCTGCAAGCGATCGGATATCGAAGACGTGGTCGAAATTTGCGAGCGCTG
CGGACGTGGCTACCATCGTGGTTGCACCGTTGAAATTGTTACTGGCAGTG
GAATTTGGAGTTGCAAACGCTGCGCTAAACCCATGAAAATGCAACAGCCT
GTCAGCCATAAGATCACAAAACCAGCGGGAATTTGTCGCCAGTTGCCCTA
CCATGCGGATAAGCTCAGCTGGGATGAGAAGCATCGGGTCAACGAAGAGC
AGATCTACTGCTACTGCGGCAAACCGGGAAAATTCGATCACAATATGCTG
CAGTGCTGCAAATGTCGGAACTGGTTCCACACCCAATGCATGCAGAACTT
CAAGAAGAAGCTGCTGCGCGGCGATATGTTCTTTGTTTTCTGCTGCACGG
TCTGCAACAATGGCATAGAATTCGTTCGTCGTATGCAAATCGAATGGGTG
GACGTGCTCCACATTGCACTATACAATCTGCGAAAGCATCAGCACCAGAA
GTACCATCACCTGCTAAATGACATTTGGCCCTTCATACTCGAGCAGCGCC
ACCAGCTGCCTATCTGCGAGAAGTGGCGCACACTGCCCGAAACGGCACTT
ATGGAGCGTCTCAAGCAAACCCTTAAGGATTACTCTGACAGATTTGTTTG
CGGCAGGGAGTTTAAAAGGGCTCCGGCCTTCTATGCACTGAGACACAGTG
GCCCGCCACACATTCCCAAGGTATTCCTTGAGCCCCACGAGGAGCTGTCT
GATGAGCTGCTCGAAAAAAGATTTAAACTAATGCTCATGCCCGAGGAGCC
TGATGAAGGTGCCAACGAGCTTCCGAAAAGAGTTCCCAAAGATGTGTATG
AGTTTAATACAGATGAAGATGACCCAGTCGAGACCAGCGAGGACGAAATA
CCCATCAAACAGATTATTGAGAAGGCCAAAAAGCAGGCCGCTCAGAAGGC
CGATAAGCATGATGAGTTGCCACTGAAGCCGGACCTCGCCGACGACAATG
CCAACGATGGCGATCCCGGCAAACTACCAGCTCCCATTCCACCTCTGCTG
GACGCAAATAGCAGTCGGAAGCGCAAGGCTTTCCGATTGTCCAAACGCTA
TGACAACAGCCGCAATCACTGTGATCTATCATCCGACGAGAATTCAAGCA
GCAGTCGGGGAACCAGTTCGTTGGACCTCATCATACCACCGCCGGTCAAC
TTTTTGGGACGCAACAATCCATTCCTTATGGCCACTCCCAAAAAGGCGTC
GCAGGGACGAAGTATTTCTGTGGGAACTGGAGTCGGAGTAAATGGCATCA
TAAACAGCATTTTCAAGCTTAAGGGCACCTCCAAGGAGCAGCCGCGCATG
GTGCGCACCATCAAGCGAAGACTGAGTGCCAAAGACATTACGATAGGGCC
CAATCAGGAAGTGCGCAGACGACGCACTCGCCGCCTGACCACGGCCATTG
AGGTCATCAGCACCACCACCATCAATCCCATACCCAGCCACTACCTTCCT
ATCTATGCCAAAGATCTGCAGCCACCCGCGCCGCCAATGGGAAAGCCGAC
ACATGGGCGCCTGTTGCGCCAGCGACCACAGAAGCAGTCACCCAGCCAAA
GCCGCCGGAACTCCACCAGCTCGACGGCAACCAGCAGCAGCAGCAACGGC
ATTGGAGCCCCAGGACATTCCATGCTGGACTTGAAGCAGTCGGTGAACAA
GTACTTTGGTGGCGCTATGAATCGCATAGATGCTGGTGAGCCCTTTGCCA
TTCGGGCCAAGCGGCGCATGGGAAATGGACAGGTCCAGTACCTGGTGGAG
TGGGGCGGAGATACAGCGACAACGGCGATTGGATTGCTTGGAAATTGAAA
GCTTTCTAGACCAT

BS01340.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
Pcl-RB 3132 CG5109-PB 1..3132 17..3148 15495 99.6 Plus
Pcl-RA 3132 CG5109-PA 1..3132 17..3148 15495 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pcl-RB 4384 CG5109-RB 499..3631 17..3149 15500 99.6 Plus
Pcl-RA 3836 CG5109-RA 499..3631 17..3149 15500 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18135924..18137412 17..1505 7340 99.5 Plus
2R 25286936 2R 18137699..18138775 1678..2754 5325 99.6 Plus
2R 25286936 2R 18138839..18139237 2751..3149 1995 100 Plus
2R 25286936 2R 18137471..18137645 1505..1679 875 100 Plus
Blast to na_te.dros performed 2014-11-27 01:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6825 2870..2965 142 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6792 2883..2951 130 70.4 Plus

BS01340.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:23 Download gff for BS01340.complete
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 1..3132 17..3148 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:24 Download gff for BS01340.complete
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 488..3634 9..3155 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:31 Download gff for BS01340.complete
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 499..3629 17..3147 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:24 Download gff for BS01340.complete
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 488..3634 9..3155 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:36 Download gff for BS01340.complete
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 499..3629 17..3147 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:36 Download gff for BS01340.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18135924..18137411 17..1504 99 -> Plus
2R 18137471..18137643 1505..1677 100 -> Plus
2R 18137699..18138773 1678..2752 99 -> Plus
2R 18138841..18139235 2753..3147 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:31 Download gff for BS01340.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14026346..14026740 2753..3147 100   Plus
arm_2R 14023429..14024916 17..1504 99 -> Plus
arm_2R 14024976..14025148 1505..1677 100 -> Plus
arm_2R 14025204..14026278 1678..2752 99 -> Plus

BS01340.pep Sequence

Translation from 16 to 3147

> BS01340.pep
MMNNHFHLQHDHPPQNVAHPFMQQPSTAVPSAPPATYGYLAQPAGQQPQW
MTTTYQILPPSVGPATVAKRYYATTGPQTTHPTHPSTIQITNSFAQQSTP
PKQQAATSCSPFKANNIRIISTAPSVYSLNKPPQEAHSTYAPVQSYYLPS
GGGQTAGQINLLAASGTGKQLQPPPLVPVTNSTSPPSTVVLDRINICINN
HYTETPTSLSSSLTTAQQPSPIIPAIQHKAILPLIDSSTADSSSCSSSSV
SSSSYSGTATTSAAVVIVDEPDSTTTTPQTPPTTPEAMSSPGKSSPSPPL
LATQSLLKGVNSMKPSFKTVEAAPPTPPTPPSPPPPPPAPPVAAPSPAVT
YALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLRKLG
GGSSITAGGGGASTTESTNTSPSGPMCVACKRSDIEDVVEICERCGRGYH
RGCTVEIVTGSGIWSCKRCAKPMKMQQPVSHKITKPAGICRQLPYHADKL
SWDEKHRVNEEQIYCYCGKPGKFDHNMLQCCKCRNWFHTQCMQNFKKKLL
RGDMFFVFCCTVCNNGIEFVRRMQIEWVDVLHIALYNLRKHQHQKYHHLL
NDIWPFILEQRHQLPICEKWRTLPETALMERLKQTLKDYSDRFVCGREFK
RAPAFYALRHSGPPHIPKVFLEPHEELSDELLEKRFKLMLMPEEPDEGAN
ELPKRVPKDVYEFNTDEDDPVETSEDEIPIKQIIEKAKKQAAQKADKHDE
LPLKPDLADDNANDGDPGKLPAPIPPLLDANSSRKRKAFRLSKRYDNSRN
HCDLSSDENSSSSRGTSSLDLIIPPPVNFLGRNNPFLMATPKKASQGRSI
SVGTGVGVNGIINSIFKLKGTSKEQPRMVRTIKRRLSAKDITIGPNQEVR
RRRTRRLTTAIEVISTTTINPIPSHYLPIYAKDLQPPAPPMGKPTHGRLL
RQRPQKQSPSQSRRNSTSSTATSSSSNGIGAPGHSMLDLKQSVNKYFGGA
MNRIDAGEPFAIRAKRRMGNGQVQYLVEWGGDTATTAIGLLGN*

BS01340.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
Pcl-PB 1043 CG5109-PB 1..1043 1..1043 5568 100 Plus
Pcl-PA 1043 CG5109-PA 1..1043 1..1043 5568 100 Plus
Sgs1-PA 1286 CG3047-PA 368..708 14..350 166 24.6 Plus
Sgs1-PA 1286 CG3047-PA 560..900 14..350 165 23.9 Plus
CG13731-PB 792 CG13731-PB 97..455 13..351 161 24.9 Plus