Clone BS01345 Report

Search the DGRC for BS01345

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:13
Well:45
Vector:pDNR-Dual
Associated Gene/Transcriptstc-RB
Protein status:BS01345.pep: full length peptide match
Sequenced Size:3353

Clone Sequence Records

BS01345.3prime Sequence

860 bp (765 high quality bases) assembled on 2005-11-29

> BS01345.3prime
ATGGTCTAGAAAGCTTCTACTTCTTCAATCCCCAAGCATTGTTACTGGGC
ACCGGGACACGGCGTTGTCCGGACTCACGAGCCAGCACTTCCATGATGCT
CGTGGCGGGGAACCAGCACCTATCCTTATGGGCCGTGGCAACAACATTGC
GATTTGGCTCCTTGTCATAGGAAACCGATTCAATCCCAAATACCTCGCAC
AACTCGTGCACCAGCTGCCTCTTTTCGCGGTTCATGGTGGGGAAAGAGTG
GCTCCTCGACCGTTGCTTGCTTTCCTTGGCCAACTTTACCAGGTCGGTCA
ACGTCTCGTAAACGCTCTTGGTCAGCGCTGGGTTCTTCTTTGCGAAGCCA
CGAACAAACTCCGAGTACTTGGTTAGACACTTTTGCTTTGTATCGGAATT
TCCAGAAGACAGGGCCGCGGCAAGACGACGATTCCTCTCCAGTAGACGAC
ATTCGTCGTTGCAATCCAAAGTTTTATTAGATTTCTTGGCTGGAGCCAAG
ATTTCGCTGAGCTCCATGTAGTTGCCGCGTGACATCTCTGCCATGGACGA
GGCCAGCTGGATGGTGGCTATACGACTGTGCTCCCTGGCTAGTTCCTGGC
AGCTGCGGTTCTGCTTTCGGTTGCCGCACTCGCACTGCACCTCCACCAGC
TCCTTGCAAGGCGTTTCCGGACAGGCTCCCTCGTGACAGGCAGCTGCACA
CTTATGACCACAGGTCGGTCGTGGCTTGGTGCAGCTCTGCCGGCATATCT
CGCCGGCAGACTGACAGGGGCCCTCGTGACACGGCTTTATACACTTGTGC
CCGCCACACGGCAACGGCTTGCCACAGGGCATGCCACAGCTAAAGTTGGG
CTGCGAGGCA

BS01345.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3647-PB 3321 stc-RB 2481..3321 857..17 4180 99.8 Minus
CG3647-PA 3300 stc-RA 2460..3300 857..17 4180 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
stc-RD 4133 CG3647-RD 2879..3720 857..16 4195 99.9 Minus
stc-RC 4112 CG3647-RC 2858..3699 857..16 4195 99.9 Minus
stc-RA 4124 CG3647-RA 2870..3711 857..16 4195 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15116681..15117067 857..471 1920 99.7 Minus
2L 23513712 2L 15117140..15117491 470..119 1760 100 Minus
2L 23513712 2L 15117553..15117656 119..16 520 100 Minus
Blast to na_te.dros performed on 2015-01-30 16:41:41 has no hits.

BS01345.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:19 Download gff for BS01345.3prime
Subject Subject Range Query Range Percent Splice Strand
stc-PB 2480..3321 17..859 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:09 Download gff for BS01345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3647-PA 2459..3300 17..859 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:28:22 Download gff for BS01345.3prime
Subject Subject Range Query Range Percent Splice Strand
stc-RA 2869..3711 16..859 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:53:53 Download gff for BS01345.3prime
Subject Subject Range Query Range Percent Splice Strand
stc-RA 2869..3711 16..859 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:53:53 Download gff for BS01345.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15116680..15117067 471..859 99 -> Minus
2L 15117140..15117491 119..470 100 -> Minus
2L 15117554..15117656 16..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:28:22 Download gff for BS01345.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15116680..15117067 471..859 99 -> Minus
arm_2L 15117140..15117491 119..470 100 -> Minus
arm_2L 15117554..15117656 16..118 100   Minus

BS01345.5prime Sequence

801 bp (799 high quality bases) assembled on 2005-11-29

> BS01345.5prime
GAAGTTATCAGTCGACATGGCTGAGTACTGGCAGCAGTTGACCAACGGCG
CCGGAGAAGCGGGACCCGGCAATGAGTCATCCGCCATGGCAGACTGCAAC
GGAGGTCACGAATCGGCGGCAGTGGGTGGTTCCTGCAACAGGCACAGCAA
CAACAATTACGTGAACTTCAATCAGTTCATTATGCAGCACAATCTGGGTG
GAGGAGCGCCCTCGAATGCCACCAGCACTATGCAACATCCGGTGGGCAGC
AGCTACACTAACTTCTCCCTGGGCGGCGGTGGAGGAGCCTTTGGACTGAA
CCCACCAGTGGCATCCGCGAGTACCAGCCACTTTGCAAATGTGAGTCATC
AATCTCCGAATTTTTACTCGCAGGCCATGATCCCAACCTATCAAAATGGC
GATGGCATCGCTAGAGTCACCGTCACCAGCAGCTATGGGTCGGTCAATCC
GAGCAACAGCAATTTTTCGAGTTTTTACACACCTTTTGGCAATAATCCGT
TTGACTTCAGCGCTTCCAAGCTGCAGGCCTCGGCTCCGGAATTCGTGCCC
AATTTCGCCAAGCTGAGTCTAGAAGAGACACCGGCAGCCGCCACTACGAA
CGGAAACAGCACTGCCAGCCTAGAGACTGCCATAAATGAGACGAGACCTA
GGACTCTGCGAGCCCAAGAACCAGCTGAACGAGGAGCTAACAACCAATGC
TCGAACCATAATTACGAACGGGAGCGTGAGCGGGAACGTGACCGGGACCG
GGACAGGGAAAGAGACCGGGACAGAGACAGGGACAGAGACCGGGACAGAG
A

BS01345.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3647-PB 3321 stc-RB 1..785 17..801 3925 100 Plus
CG3647-PA 3300 stc-RA 322..764 359..801 2215 100 Plus
CG3647-PA 3300 stc-RA 1..324 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
stc-RB 4145 CG3647-RB 411..1195 17..801 3925 100 Plus
stc-RD 4133 CG3647-RD 411..1183 17..801 3735 98.5 Plus
stc-RA 4124 CG3647-RA 411..1174 17..801 3600 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15114300..15114739 362..801 2200 100 Plus
2L 23513712 2L 15113890..15114234 17..361 1725 100 Plus
Blast to na_te.dros performed on 2015-02-04 04:17:47 has no hits.

BS01345.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:20 Download gff for BS01345.5prime
Subject Subject Range Query Range Percent Splice Strand
stc-PB 1..784 17..800 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:10 Download gff for BS01345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3647-PB 1..784 17..800 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:09:35 Download gff for BS01345.5prime
Subject Subject Range Query Range Percent Splice Strand
stc-RB 406..1194 8..800 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:50:48 Download gff for BS01345.5prime
Subject Subject Range Query Range Percent Splice Strand
stc-RB 406..1194 8..800 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:50:48 Download gff for BS01345.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15113885..15114234 8..361 98 -> Plus
2L 15114300..15114738 362..800 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:09:35 Download gff for BS01345.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15113885..15114234 8..361 98 -> Plus
arm_2L 15114300..15114738 362..800 100   Plus

BS01345.complete Sequence

3353 bp assembled on 2008-08-15

GenBank Submission: FJ634603

> BS01345.complete
GAAGTTATCAGTCGACATGGCTGAGTACTGGCAGCAGTTGACCAACGGCG
CCGGAGAAGCGGGACCCGGCAATGAGTCATCCGCCATGGCAGACTGCAAC
GGAGGTCACGAATCGGCGGCAGTGGGTGGTTCCTGCAACAGGCACAGCAA
CAACAATTACGTGAACTTCAATCAGTTCATTATGCAGCACAATCTGGGTG
GAGGAGCGCCCTCGAATGCCACCAGCACTATGCAACATCCGGTGGGCAGC
AGCTACACTAACTTCTCCCTGGGCGGCGGTGGAGGAGCCTTTGGACTGAA
CCCACCAGTGGCATCCGCGAGTACCAGCCACTTTGCAAATGTGAGTCATC
AATCTCCGAATTTTTACTCGCAGGCCATGATCCCAACCTATCAAAATGGC
GATGGCATCGCTAGAGTCACCGTCACCAGCAGCTATGGGTCGGTCAATCC
GAGCAACAGCAATTTTTCGAGTTTTTACACACCTTTTGGCAATAATCCGT
TTGACTTCAGCGCTTCCAAGCTGCAGGCCTCGGCTCCGGAATTCGTGCCC
AATTTCGCCAAGCTGAGTCTAGAAGAGACACCGGCAGCCGCCACTACGAA
CGGAAACAGCACTGCCAGCCTAGAGACTGCCATAAATGAGACGAGACCTA
GGACTCTGCGAGCCCAAGAACCAGCTGAACGAGGAGCTAACAACCAATGC
TCGAACCATAATTACGAACGGGAGCGTGAGCGGGAACGTGACCGGGACCG
GGACAGGGAAAGAGACCGGGACAGAGACAGGGACAGAGACCGGGACAGAG
ACCGGGACAGGGACAGGGACTCTAGACCCGGAAATACGCGACAACAACGC
CGCTCCGACTATCGGGACGATCGGGAGGACCGGTACGAAAGAAGCGATCG
TAGGAGGCCGCAGAAGCAGCAACGCTACGACAATCATCGCAGCAACAAAC
GCAGGGATGACTGGAATCGCAACAGGGACCGCATCAACGGCTTTCCCAGG
GCCGTTGACGATTTGGACACGAGCAATGAGAGCGCACACCCATCGCCCGA
AAAGCAGTCGCAACTGCAGCAAATCTCCCCAAGGCGAGGTCCACCGCTAC
CACCGGCGGATAACGAAAAACTATCGCAGCGAGAGAAACTGGTTCGCGAC
ATCGAACAGCGCCGATTGGAGTGCCTTGTATGCGTGGAGGCGATCAAGTC
GCACCAGCCAACCTGGTCGTGCAGGAACTGCTATCACATGCTGCACCTTA
AGTGCACCATCACCTGGGCGAGTAGCTCCAAGTCCGAGGTGGGCTGGCGT
TGTCCAGCTTGCCAGAATGTGCTGCAGGATTTGCCACGCGACTATCTCTG
CTTTTGCGGCAAACTGAAAAACCCGCCGGTATCACGGACCGAATTGGCCC
ACAGCTGTGGCGAGGTCTGCTGCCGAATTGAGGGTTGTAGCCATGCCTGC
ACTCTGCTCTGTCACCCAGGCCCTTGTCCGCCGTGCCAGGCCAACGTGGT
GCGCAGCTGTGGATGTGGACGCAGCACAAAAACGATGCAGTGCGCCATGA
AGGAAGAGGTGCTCTGCGGCGAGATCTGCGACAAGCTGCTTAACTGTGGC
GAGCATCGCTGCCAGGCGGAGTGCCACTCGGGCAAGTGCGCGGCGTGTTC
CGAGCAAGTGGTGCAGCAGTGCCACTGCGGCAAGCAGGAGCGCAAGGTGC
CATGCACGCGAGAATCGCAGGACAAACGCACCTATTCGTGCAAGGACAGC
TGCGGTCAACCGCTTCCCTGCGGCCACCACAAGTGCAAGGACTCCTGCCA
CGCGGGAAGTTGTAGACCCTGCAAGCTGAGTCCCGAGCAGATAACAAGTT
GTCCTTGTGGCAAAATGCCTGTACCGGCTGGCCAGCGTTCAAGCTGCCTG
GACCCGATTCCCACATGCGAGGGCATCTGCTCTAGGACATTACGTTGTGG
AAAGCCAGCGCATCCGCATCAATGCGGAAGCAAATGTCACTTGGGCCAGT
GCCCTCCATGTCCCAAGCAGACCGGTGTAAAGTGTCGTTGCGGCCACATG
GACCAAATGATAAAGTGTCGGCAGCTATGTAACAGAGCGGACGACGCCCG
CTGCAAGCGACGTTGCACCAAGAAGCGCAGCTGTGGAAAGCACAAGTGCA
ACGTTGAGTGCTGCATCGATATAGACCACGACTGTCCACTGCCATGTAAT
CGAACCCTCAGTTGTGGCAAACACAAGTGCGATCAGCCGTGTCACCGCGG
CAATTGTCCGCCATGCTACCGCAGCAGTTTCGAAGAGCTCTATTGCGAGT
GTGGTGCCGAAGTGATCTATCCACCAGTGCCGTGTGGCACCAAGAAGCCA
ATCTGCAAGCTTCCTTGCTCGCGCATTCATCCATGCGATCATCCGCCGCA
GCACAACTGCCATTCGGGCCCCACCTGTCCGCCCTGCATGATTTTCACGA
CGAAATTGTGTCACGGCAACCACGAGCTGCGCAAGACCATTCCCTGCTCG
CAGCCCAACTTTAGCTGTGGCATGGCCTGTGGCAAGCCGTTGCCGTGTGG
CGGGCACAAGTGTATAAAGCCGTGTCACGAGGGCCCCTGTCAGTCTGCCG
GCGAGATATGCCGGCAGAGCTGCACCAAGCCACGACCGACCTGTGGTCAT
AAGTGTGCAGCTGCCTGTCACGAGGGAGCCTGTCCGGAAACGCCTTGCAA
GGAGCTGGTGGAGGTGCAGTGCGAGTGCGGCAACCGAAAGCAGAACCGCA
GCTGCCAGGAACTAGCCAGGGAGCACAGTCGTATAGCCACCATCCAGCTG
GCCTCGTCCATGGCAGAGATGTCACGCGGCAACTACATGGAGCTCAGCGA
AATCTTGGCTCCAGCCAAGAAATCTAATAAAACTTTGGATTGCAACGACG
AATGTCGTCTACTGGAGAGGAATCGTCGTCTTGCCGCGGCCCTGTCTTCT
GGAAATTCCGATACAAAGCAAAAGTGTCTAACCAAGTACTCGGAGTTTGT
TCGTGGCTTCGCAAAGAAGAACCCAGCGCTGACCAAGAGCGTTTACGAGA
CGTTGACCGACCTGGTAAAGTTGGCCAAGGAAAGCAAGCAACGGTCGAGG
AGCCACTCTTTCCCCACCATGAACCGCGAAAAGAGGCAGCTGGTGCACGA
GTTGTGCGAGGTATTTGGGATTGAATCGGTTTCCTATGACAAGGAGCCAA
ATCGCAATGTTGTTGCCACGGCCCATAAGGATAGGTGCTGGTTCCCCGCC
ACGAGCATCATGGAAGTGCTGGCTCGTGAGTCCGGACAACGCCGTGTCCC
GGTGCCCAGTAACAATGCTTGGGGATTGAAGAAGTAGAAGCTTTCTAGAC
CAT

BS01345.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
stc-RB 3321 CG3647-PB 1..3321 17..3337 16605 100 Plus
stc-RD 3309 CG3647-PD 1..3309 17..3337 16390 99.6 Plus
stc-RA 3300 CG3647-PA 1..3300 17..3337 16255 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
stc-RB 4145 CG3647-RB 411..3732 17..3338 16610 100 Plus
stc-RD 4133 CG3647-RD 411..3720 17..3338 16395 99.6 Plus
stc-RA 4124 CG3647-RA 411..3711 17..3338 16260 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15114300..15115753 362..1815 7270 100 Plus
2L 23513712 2L 15115998..15117067 1814..2883 5350 100 Plus
2L 23513712 2L 15117140..15117491 2884..3235 1760 100 Plus
2L 23513712 2L 15113890..15114234 17..361 1725 100 Plus
2L 23513712 2L 15117553..15117656 3235..3338 520 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:24:43 has no hits.

BS01345.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:44 Download gff for BS01345.complete
Subject Subject Range Query Range Percent Splice Strand
stc-RB 404..3730 8..3338 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:28 Download gff for BS01345.complete
Subject Subject Range Query Range Percent Splice Strand
stc-RB 411..3731 17..3337 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:28 Download gff for BS01345.complete
Subject Subject Range Query Range Percent Splice Strand
stc-RB 409..3729 17..3337 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:03 Download gff for BS01345.complete
Subject Subject Range Query Range Percent Splice Strand
stc-RB 411..3731 17..3337 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:03 Download gff for BS01345.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15113890..15114234 17..361 100 -> Plus
2L 15114300..15115753 362..1815 100 -> Plus
2L 15116000..15117067 1816..2883 100 -> Plus
2L 15117140..15117491 2884..3235 100 -> Plus
2L 15117554..15117655 3236..3337 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:28 Download gff for BS01345.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15113890..15114234 17..361 100 -> Plus
arm_2L 15114300..15115753 362..1815 100 -> Plus
arm_2L 15116000..15117067 1816..2883 100 -> Plus
arm_2L 15117140..15117491 2884..3235 100 -> Plus
arm_2L 15117554..15117655 3236..3337 100   Plus

BS01345.pep Sequence

Translation from 16 to 3336

> BS01345.pep
MAEYWQQLTNGAGEAGPGNESSAMADCNGGHESAAVGGSCNRHSNNNYVN
FNQFIMQHNLGGGAPSNATSTMQHPVGSSYTNFSLGGGGGAFGLNPPVAS
ASTSHFANVSHQSPNFYSQAMIPTYQNGDGIARVTVTSSYGSVNPSNSNF
SSFYTPFGNNPFDFSASKLQASAPEFVPNFAKLSLEETPAAATTNGNSTA
SLETAINETRPRTLRAQEPAERGANNQCSNHNYERERERERDRDRDRERD
RDRDRDRDRDRDRDRDRDSRPGNTRQQRRSDYRDDREDRYERSDRRRPQK
QQRYDNHRSNKRRDDWNRNRDRINGFPRAVDDLDTSNESAHPSPEKQSQL
QQISPRRGPPLPPADNEKLSQREKLVRDIEQRRLECLVCVEAIKSHQPTW
SCRNCYHMLHLKCTITWASSSKSEVGWRCPACQNVLQDLPRDYLCFCGKL
KNPPVSRTELAHSCGEVCCRIEGCSHACTLLCHPGPCPPCQANVVRSCGC
GRSTKTMQCAMKEEVLCGEICDKLLNCGEHRCQAECHSGKCAACSEQVVQ
QCHCGKQERKVPCTRESQDKRTYSCKDSCGQPLPCGHHKCKDSCHAGSCR
PCKLSPEQITSCPCGKMPVPAGQRSSCLDPIPTCEGICSRTLRCGKPAHP
HQCGSKCHLGQCPPCPKQTGVKCRCGHMDQMIKCRQLCNRADDARCKRRC
TKKRSCGKHKCNVECCIDIDHDCPLPCNRTLSCGKHKCDQPCHRGNCPPC
YRSSFEELYCECGAEVIYPPVPCGTKKPICKLPCSRIHPCDHPPQHNCHS
GPTCPPCMIFTTKLCHGNHELRKTIPCSQPNFSCGMACGKPLPCGGHKCI
KPCHEGPCQSAGEICRQSCTKPRPTCGHKCAAACHEGACPETPCKELVEV
QCECGNRKQNRSCQELAREHSRIATIQLASSMAEMSRGNYMELSEILAPA
KKSNKTLDCNDECRLLERNRRLAAALSSGNSDTKQKCLTKYSEFVRGFAK
KNPALTKSVYETLTDLVKLAKESKQRSRSHSFPTMNREKRQLVHELCEVF
GIESVSYDKEPNRNVVATAHKDRCWFPATSIMEVLARESGQRRVPVPSNN
AWGLKK*

BS01345.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
stc-PB 1106 CG3647-PB 1..1106 1..1106 6216 100 Plus
stc-PD 1102 CG3647-PD 1..1102 1..1106 6179 99.6 Plus
stc-PA 1099 CG3647-PA 1..1099 1..1106 6160 99.4 Plus
stc-PC 1095 CG3647-PC 1..1095 1..1106 6134 99 Plus
CG15011-PA 840 CG15011-PA 75..682 386..926 960 33.6 Plus