Clone Sequence Records
BS01402.5prime Sequence
356 bp (355 high quality bases) assembled on 2005-11-29
> BS01402.5prime
GAAGTTATCAGTCGACATGTTGCTGAAACAGTTGCCCCAGGCTGTTCAGC
AGATACGCTGCATCTCATCGGCCACGACGGCGGTTACCAGGCTGCATCGC
TCGGTTTACTGCCGGCTATATCCCACAGTTGTGGTGCAACCCGATGGATC
CACGATAAACATCCGCTATCACGAGCCCAGGAAGATTATCAAGCTTCCCT
TGGATCTGAGCACCTTAACCGATGCGGAGCGCAGAGCGAGATTGGAGGCC
CGCAAGCCGCGCAAGAAGGTCAAGATCATGGAGGAGGTGGAGGACAACTT
CAACGCCAAGAAGTACATGAAGTACATCAAAAAGAAGTAGCGAAGCTTTC
TAGACC
BS01402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14283-PA | 324 | mRpL55-RA | 1..324 | 17..340 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL55-RA | 456 | CG14283-RA | 88..412 | 17..341 | 1625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19094642..19094818 | 193..17 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 19094438..19094587 | 341..192 | 750 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1159..1206 | 289..336 | 105 | 68.8 | Plus |
BS01402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:45 Download gff for
BS01402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14283-PA | 1..324 | 17..340 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:41 Download gff for
BS01402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14283-PA | 1..324 | 17..340 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:50:43 Download gff for
BS01402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 73..415 | 5..349 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:17 Download gff for
BS01402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 76..418 | 5..349 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:17 Download gff for
BS01402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19094430..19094585 | 194..349 | 97 | <- | Minus |
| 3R | 19094642..19094830 | 5..193 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:50:43 Download gff for
BS01402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14920152..14920307 | 194..349 | 97 | <- | Minus |
| arm_3R | 14920364..14920552 | 5..193 | 97 | | Minus |
BS01402.3prime Sequence
356 bp (355 high quality bases) assembled on 2005-11-29
> BS01402.3prime
ATGGTCTAGAAAGCTTCGCTACTTCTTTTTGATGTACTTCATGTACTTCT
TGGCGTTGAAGTTGTCCTCCACCTCCTCCATGATCTTGACCTTCTTGCGC
GGCTTGCGGGCCTCCAATCTCGCTCTGCGCTCCGCATCGGTTAAGGTGCT
CAGATCCAAGGGAAGCTTGATAATCTTCCTGGGCTCGTGATAGCGGATGT
TTATCGTGGATCCATCGGGTTGCACCACAACTGTGGGATATAGCCGGCAG
TAAACCGAGCGATGCAGCCTGGTAACCGCCGTCGTGGCCGATGAGATGCA
GCGTATCTGCTGAACAGCCTGGGGCAACTGTTTCAGCAACATGTCGACTG
ATAACT
BS01402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14283-PA | 324 | mRpL55-RA | 1..324 | 342..19 | 1620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL55-RA | 456 | CG14283-RA | 88..412 | 342..18 | 1625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19094642..19094818 | 166..342 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 19094438..19094587 | 18..167 | 750 | 100 | Plus |
Blast to na_te.dros performed 2015-01-31 15:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1159..1206 | 70..23 | 105 | 68.8 | Minus |
BS01402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:44 Download gff for
BS01402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14283-PA | 1..324 | 19..342 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:40 Download gff for
BS01402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14283-PA | 1..324 | 19..342 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:27:15 Download gff for
BS01402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 73..415 | 10..354 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:42:43 Download gff for
BS01402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 76..418 | 10..354 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:42:43 Download gff for
BS01402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19094430..19094585 | 10..165 | 97 | <- | Plus |
| 3R | 19094642..19094830 | 166..354 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:27:15 Download gff for
BS01402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14920152..14920307 | 10..165 | 97 | <- | Plus |
| arm_3R | 14920364..14920552 | 166..354 | 97 | | Plus |
BS01402.complete Sequence
358 bp assembled on 2007-10-17
GenBank Submission: FJ634605
> BS01402.complete
GAAGTTATCAGTCGACATGTTGCTGAAACAGTTGCCCCAGGCTGTTCAGC
AGATACGCTGCATCTCATCGGCCACGACGGCGGTTACCAGGCTGCATCGC
TCGGTTTACTGCCGGCTATATCCCACAGTTGTGGTGCAACCCGATGGATC
CACGATAAACATCCGCTATCACGAGCCCAGGAAGATTATCAAGCTTCCCT
TGGATCTGAGCACCTTAACCGATGCGGAGCGCAGAGCGAGATTGGAGGCC
CGCAAGCCGCGCAAGAAGGTCAAGATCATGGAGGAGGTGGAGGACAACTT
CAACGCCAAGAAGTACATGAAGTACATCAAAAAGAAGTAGCGAAGCTTTC
TAGACCAT
BS01402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL55-RA | 324 | CG14283-PA | 1..324 | 17..340 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL55-RA | 456 | CG14283-RA | 88..412 | 17..341 | 1625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19094642..19094818 | 193..17 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 19094438..19094587 | 341..192 | 750 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1159..1206 | 289..336 | 105 | 68.8 | Plus |
BS01402.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:03:17 Download gff for
BS01402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 1..324 | 17..340 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:31:57 Download gff for
BS01402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 68..410 | 5..349 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:28 Download gff for
BS01402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 90..409 | 22..342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:01 Download gff for
BS01402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 85..404 | 22..342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:29 Download gff for
BS01402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 93..412 | 22..342 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:29 Download gff for
BS01402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19094436..19094585 | 194..342 | 99 | <- | Minus |
| 3R | 19094642..19094813 | 22..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:28 Download gff for
BS01402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14920158..14920307 | 194..342 | 99 | <- | Minus |
| arm_3R | 14920364..14920535 | 22..193 | 100 | | Minus |
BS01402.pep Sequence
Translation from 16 to 339
> BS01402.pep
MLLKQLPQAVQQIRCISSATTAVTRLHRSVYCRLYPTVVVQPDGSTINIR
YHEPRKIIKLPLDLSTLTDAERRARLEARKPRKKVKIMEEVEDNFNAKKY
MKYIKKK*
BS01402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL55-PA | 107 | CG14283-PA | 1..107 | 1..107 | 542 | 100 | Plus |
