Clone Sequence Records
BS01404.5prime Sequence
416 bp (415 high quality bases) assembled on 2005-11-29
> BS01404.5prime
GAAGTTATCAGTCGACATGATGTCGTCGGATCAACAGTTCTTTCTAAAAT
GGAACGATTTTCAAACGAATATGGTGACCTCGTTCCGTCACCTGCGCGAC
GAGAAGAGCTTCACAGATGTAACACTCGCCTGCGAGGGCCAAACCTGCAA
AGCCCACAAAATGGTGCTTTCCGCTTGCAGTCCCTACTTTAAAGCGCTAC
TGGAGGAGAACCCATCGAAGCATCCGATCATTATCCTGAAAGATGTCTCC
TACATTCACCTACAGGCTATACTGGAGTTCATGTACGCCGGTGAGGTGAA
CGTGTCCCAGGAACAATTGCCAGCATTTCTTAAGACCGCCGATCGCCTCA
AAGTGAAAGGCCTCGCAGAGACACCCAGTTCGATAAAGCGGGAAGGTTGA
CGAAGCTTTCTAGACC
BS01404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5738-PB | 384 | lolal-RB | 1..384 | 17..400 | 1920 | 100 | Plus |
CG5738-PA | 384 | lolal-RA | 1..384 | 17..400 | 1920 | 100 | Plus |
CG5738-PC | 384 | lolal-RC | 1..384 | 17..400 | 1920 | 100 | Plus |
CG5738-PD | 384 | lolal-RD | 1..384 | 17..400 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lolal-RH | 958 | CG5738-RH | 271..655 | 16..400 | 1925 | 100 | Plus |
lolal-RG | 1005 | CG5738-RG | 318..702 | 16..400 | 1925 | 100 | Plus |
lolal-RF | 1384 | CG5738-RF | 284..668 | 16..400 | 1925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18155148..18155344 | 400..204 | 985 | 100 | Minus |
2R | 25286936 | 2R | 18155890..18155994 | 120..16 | 525 | 100 | Minus |
2R | 25286936 | 2R | 18155404..18155491 | 206..119 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:36:54 has no hits.
BS01404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:47 Download gff for
BS01404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lolal-PB | 1..384 | 17..400 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:44 Download gff for
BS01404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5738-PD | 1..384 | 17..400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:30:04 Download gff for
BS01404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lolal-RE | 382..770 | 12..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:19:52 Download gff for
BS01404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lolal-RF | 280..668 | 12..400 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:52 Download gff for
BS01404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18155148..18155342 | 206..400 | 100 | <- | Minus |
2R | 18155405..18155491 | 119..205 | 100 | <- | Minus |
2R | 18155892..18155998 | 12..118 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:30:04 Download gff for
BS01404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14042653..14042847 | 206..400 | 100 | <- | Minus |
arm_2R | 14042910..14042996 | 119..205 | 100 | <- | Minus |
arm_2R | 14043397..14043503 | 12..118 | 98 | | Minus |
BS01404.3prime Sequence
416 bp (415 high quality bases) assembled on 2005-11-29
> BS01404.3prime
ATGGTCTAGAAAGCTTCGTCAACCTTCCCGCTTTATCGAACTGGGTGTCT
CTGCGAGGCCTTTCACTTTGAGGCGATCGGCGGTCTTAAGAAATGCTGGC
AATTGTTCCTGGGACACGTTCACCTCACCGGCGTACATGAACTCCAGTAT
AGCCTGTAGGTGAATGTAGGAGACATCTTTCAGGATAATGATCGGATGCT
TCGATGGGTTCTCCTCCAGTAGCGCTTTAAAGTAGGGACTGCAAGCGGAA
AGCACCATTTTGTGGGCTTTGCAGGTTTGGCCCTCGCAGGCGAGTGTTAC
ATCTGTGAAGCTCTTCTCGTCGCGCAGGTGACGGAACGAGGTCACCATAT
TCGTTTGAAAATCGTTCCATTTTAGAAAGAACTGTTGATCCGACGACATC
ATGTCGACTGATAACT
BS01404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5738-PB | 384 | lolal-RB | 1..384 | 402..19 | 1920 | 100 | Minus |
CG5738-PA | 384 | lolal-RA | 1..384 | 402..19 | 1920 | 100 | Minus |
CG5738-PC | 384 | lolal-RC | 1..384 | 402..19 | 1920 | 100 | Minus |
CG5738-PD | 384 | lolal-RD | 1..384 | 402..19 | 1920 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lolal-RH | 958 | CG5738-RH | 271..655 | 403..19 | 1925 | 100 | Minus |
lolal-RG | 1005 | CG5738-RG | 318..702 | 403..19 | 1925 | 100 | Minus |
lolal-RF | 1384 | CG5738-RF | 284..668 | 403..19 | 1925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18155148..18155344 | 19..215 | 985 | 100 | Plus |
2R | 25286936 | 2R | 18155890..18155994 | 299..403 | 525 | 100 | Plus |
2R | 25286936 | 2R | 18155404..18155491 | 213..300 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:48:47 has no hits.
BS01404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:46 Download gff for
BS01404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lolal-PB | 1..384 | 19..402 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:43 Download gff for
BS01404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5738-PD | 1..384 | 19..402 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:37:11 Download gff for
BS01404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lolal-RE | 382..770 | 19..407 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:58 Download gff for
BS01404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lolal-RF | 280..668 | 19..407 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:58 Download gff for
BS01404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18155148..18155342 | 19..213 | 100 | <- | Plus |
2R | 18155405..18155491 | 214..300 | 100 | <- | Plus |
2R | 18155892..18155998 | 301..407 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:37:11 Download gff for
BS01404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14042653..14042847 | 19..213 | 100 | <- | Plus |
arm_2R | 14042910..14042996 | 214..300 | 100 | <- | Plus |
arm_2R | 14043397..14043503 | 301..407 | 98 | | Plus |
BS01404.complete Sequence
418 bp (418 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634606
> BS01404.complete
GAAGTTATCAGTCGACATGATGTCGTCGGATCAACAGTTCTTTCTAAAAT
GGAACGATTTTCAAACGAATATGGTGACCTCGTTCCGTCACCTGCGCGAC
GAGAAGAGCTTCACAGATGTAACACTCGCCTGCGAGGGCCAAACCTGCAA
AGCCCACAAAATGGTGCTTTCCGCTTGCAGTCCCTACTTTAAAGCGCTAC
TGGAGGAGAACCCATCGAAGCATCCGATCATTATCCTGAAAGATGTCTCC
TACATTCACCTACAGGCTATACTGGAGTTCATGTACGCCGGTGAGGTGAA
CGTGTCCCAGGAACAATTGCCAGCATTTCTTAAGACCGCCGATCGCCTCA
AAGTGAAAGGCCTCGCAGAGACACCCAGTTCGATAAAGCGGGAAGGTTGA
CGAAGCTTTCTAGACCAT
BS01404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lolal-RH | 384 | CG5738-PH | 1..384 | 17..400 | 1920 | 100 | Plus |
lolal-RG | 384 | CG5738-PG | 1..384 | 17..400 | 1920 | 100 | Plus |
lolal-RF | 384 | CG5738-PF | 1..384 | 17..400 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lolal-RH | 958 | CG5738-RH | 271..655 | 16..400 | 1925 | 100 | Plus |
lolal-RG | 1005 | CG5738-RG | 318..702 | 16..400 | 1925 | 100 | Plus |
lolal-RF | 1384 | CG5738-RF | 284..668 | 16..400 | 1925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18155148..18155344 | 400..204 | 985 | 100 | Minus |
2R | 25286936 | 2R | 18155890..18155994 | 120..16 | 525 | 100 | Minus |
2R | 25286936 | 2R | 18155404..18155491 | 206..119 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:23:12 has no hits.
BS01404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:31 Download gff for
BS01404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lolal-RC | 1..384 | 17..400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:08 Download gff for
BS01404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lolal-RC | 262..650 | 12..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:24 Download gff for
BS01404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lolal-RE | 387..772 | 17..402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:31 Download gff for
BS01404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lolal-RD | 303..691 | 12..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:22 Download gff for
BS01404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lolal-RF | 285..670 | 17..402 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:22 Download gff for
BS01404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18155146..18155342 | 206..402 | 99 | <- | Minus |
2R | 18155405..18155491 | 119..205 | 100 | <- | Minus |
2R | 18155892..18155993 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:24 Download gff for
BS01404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14042910..14042996 | 119..205 | 100 | <- | Minus |
arm_2R | 14043397..14043498 | 17..118 | 100 | | Minus |
arm_2R | 14042651..14042847 | 206..402 | 99 | <- | Minus |
BS01404.pep Sequence
Translation from 16 to 399
> BS01404.pep
MMSSDQQFFLKWNDFQTNMVTSFRHLRDEKSFTDVTLACEGQTCKAHKMV
LSACSPYFKALLEENPSKHPIIILKDVSYIHLQAILEFMYAGEVNVSQEQ
LPAFLKTADRLKVKGLAETPSSIKREG*
BS01404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lolal-PH | 127 | CG5738-PH | 1..127 | 1..127 | 657 | 100 | Plus |
lolal-PG | 127 | CG5738-PG | 1..127 | 1..127 | 657 | 100 | Plus |
lolal-PF | 127 | CG5738-PF | 1..127 | 1..127 | 657 | 100 | Plus |
lolal-PE | 127 | CG5738-PE | 1..127 | 1..127 | 657 | 100 | Plus |
lolal-PD | 127 | CG5738-PD | 1..127 | 1..127 | 657 | 100 | Plus |