Clone BS01404 Report

Search the DGRC for BS01404

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:4
Vector:pDNR-Dual
Associated Gene/Transcriptlolal-RD
Protein status:BS01404.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01404.5prime Sequence

416 bp (415 high quality bases) assembled on 2005-11-29

> BS01404.5prime
GAAGTTATCAGTCGACATGATGTCGTCGGATCAACAGTTCTTTCTAAAAT
GGAACGATTTTCAAACGAATATGGTGACCTCGTTCCGTCACCTGCGCGAC
GAGAAGAGCTTCACAGATGTAACACTCGCCTGCGAGGGCCAAACCTGCAA
AGCCCACAAAATGGTGCTTTCCGCTTGCAGTCCCTACTTTAAAGCGCTAC
TGGAGGAGAACCCATCGAAGCATCCGATCATTATCCTGAAAGATGTCTCC
TACATTCACCTACAGGCTATACTGGAGTTCATGTACGCCGGTGAGGTGAA
CGTGTCCCAGGAACAATTGCCAGCATTTCTTAAGACCGCCGATCGCCTCA
AAGTGAAAGGCCTCGCAGAGACACCCAGTTCGATAAAGCGGGAAGGTTGA
CGAAGCTTTCTAGACC

BS01404.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5738-PB 384 lolal-RB 1..384 17..400 1920 100 Plus
CG5738-PA 384 lolal-RA 1..384 17..400 1920 100 Plus
CG5738-PC 384 lolal-RC 1..384 17..400 1920 100 Plus
CG5738-PD 384 lolal-RD 1..384 17..400 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
lolal-RH 958 CG5738-RH 271..655 16..400 1925 100 Plus
lolal-RG 1005 CG5738-RG 318..702 16..400 1925 100 Plus
lolal-RF 1384 CG5738-RF 284..668 16..400 1925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18155148..18155344 400..204 985 100 Minus
2R 25286936 2R 18155890..18155994 120..16 525 100 Minus
2R 25286936 2R 18155404..18155491 206..119 440 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:36:54 has no hits.

BS01404.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:47 Download gff for BS01404.5prime
Subject Subject Range Query Range Percent Splice Strand
lolal-PB 1..384 17..400 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:44 Download gff for BS01404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5738-PD 1..384 17..400 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:30:04 Download gff for BS01404.5prime
Subject Subject Range Query Range Percent Splice Strand
lolal-RE 382..770 12..400 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:19:52 Download gff for BS01404.5prime
Subject Subject Range Query Range Percent Splice Strand
lolal-RF 280..668 12..400 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:52 Download gff for BS01404.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18155148..18155342 206..400 100 <- Minus
2R 18155405..18155491 119..205 100 <- Minus
2R 18155892..18155998 12..118 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:30:04 Download gff for BS01404.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14042653..14042847 206..400 100 <- Minus
arm_2R 14042910..14042996 119..205 100 <- Minus
arm_2R 14043397..14043503 12..118 98   Minus

BS01404.3prime Sequence

416 bp (415 high quality bases) assembled on 2005-11-29

> BS01404.3prime
ATGGTCTAGAAAGCTTCGTCAACCTTCCCGCTTTATCGAACTGGGTGTCT
CTGCGAGGCCTTTCACTTTGAGGCGATCGGCGGTCTTAAGAAATGCTGGC
AATTGTTCCTGGGACACGTTCACCTCACCGGCGTACATGAACTCCAGTAT
AGCCTGTAGGTGAATGTAGGAGACATCTTTCAGGATAATGATCGGATGCT
TCGATGGGTTCTCCTCCAGTAGCGCTTTAAAGTAGGGACTGCAAGCGGAA
AGCACCATTTTGTGGGCTTTGCAGGTTTGGCCCTCGCAGGCGAGTGTTAC
ATCTGTGAAGCTCTTCTCGTCGCGCAGGTGACGGAACGAGGTCACCATAT
TCGTTTGAAAATCGTTCCATTTTAGAAAGAACTGTTGATCCGACGACATC
ATGTCGACTGATAACT

BS01404.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5738-PB 384 lolal-RB 1..384 402..19 1920 100 Minus
CG5738-PA 384 lolal-RA 1..384 402..19 1920 100 Minus
CG5738-PC 384 lolal-RC 1..384 402..19 1920 100 Minus
CG5738-PD 384 lolal-RD 1..384 402..19 1920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
lolal-RH 958 CG5738-RH 271..655 403..19 1925 100 Minus
lolal-RG 1005 CG5738-RG 318..702 403..19 1925 100 Minus
lolal-RF 1384 CG5738-RF 284..668 403..19 1925 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18155148..18155344 19..215 985 100 Plus
2R 25286936 2R 18155890..18155994 299..403 525 100 Plus
2R 25286936 2R 18155404..18155491 213..300 440 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:48:47 has no hits.

BS01404.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:46 Download gff for BS01404.3prime
Subject Subject Range Query Range Percent Splice Strand
lolal-PB 1..384 19..402 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:43 Download gff for BS01404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5738-PD 1..384 19..402 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:37:11 Download gff for BS01404.3prime
Subject Subject Range Query Range Percent Splice Strand
lolal-RE 382..770 19..407 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:58 Download gff for BS01404.3prime
Subject Subject Range Query Range Percent Splice Strand
lolal-RF 280..668 19..407 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:58 Download gff for BS01404.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18155148..18155342 19..213 100 <- Plus
2R 18155405..18155491 214..300 100 <- Plus
2R 18155892..18155998 301..407 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:37:11 Download gff for BS01404.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14042653..14042847 19..213 100 <- Plus
arm_2R 14042910..14042996 214..300 100 <- Plus
arm_2R 14043397..14043503 301..407 98   Plus

BS01404.complete Sequence

418 bp (418 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634606

> BS01404.complete
GAAGTTATCAGTCGACATGATGTCGTCGGATCAACAGTTCTTTCTAAAAT
GGAACGATTTTCAAACGAATATGGTGACCTCGTTCCGTCACCTGCGCGAC
GAGAAGAGCTTCACAGATGTAACACTCGCCTGCGAGGGCCAAACCTGCAA
AGCCCACAAAATGGTGCTTTCCGCTTGCAGTCCCTACTTTAAAGCGCTAC
TGGAGGAGAACCCATCGAAGCATCCGATCATTATCCTGAAAGATGTCTCC
TACATTCACCTACAGGCTATACTGGAGTTCATGTACGCCGGTGAGGTGAA
CGTGTCCCAGGAACAATTGCCAGCATTTCTTAAGACCGCCGATCGCCTCA
AAGTGAAAGGCCTCGCAGAGACACCCAGTTCGATAAAGCGGGAAGGTTGA
CGAAGCTTTCTAGACCAT

BS01404.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
lolal-RH 384 CG5738-PH 1..384 17..400 1920 100 Plus
lolal-RG 384 CG5738-PG 1..384 17..400 1920 100 Plus
lolal-RF 384 CG5738-PF 1..384 17..400 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
lolal-RH 958 CG5738-RH 271..655 16..400 1925 100 Plus
lolal-RG 1005 CG5738-RG 318..702 16..400 1925 100 Plus
lolal-RF 1384 CG5738-RF 284..668 16..400 1925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18155148..18155344 400..204 985 100 Minus
2R 25286936 2R 18155890..18155994 120..16 525 100 Minus
2R 25286936 2R 18155404..18155491 206..119 440 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:23:12 has no hits.

BS01404.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:31 Download gff for BS01404.complete
Subject Subject Range Query Range Percent Splice Strand
lolal-RC 1..384 17..400 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:08 Download gff for BS01404.complete
Subject Subject Range Query Range Percent Splice Strand
lolal-RC 262..650 12..400 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:24 Download gff for BS01404.complete
Subject Subject Range Query Range Percent Splice Strand
lolal-RE 387..772 17..402 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:31 Download gff for BS01404.complete
Subject Subject Range Query Range Percent Splice Strand
lolal-RD 303..691 12..400 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:22 Download gff for BS01404.complete
Subject Subject Range Query Range Percent Splice Strand
lolal-RF 285..670 17..402 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:22 Download gff for BS01404.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18155146..18155342 206..402 99 <- Minus
2R 18155405..18155491 119..205 100 <- Minus
2R 18155892..18155993 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:24 Download gff for BS01404.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14042910..14042996 119..205 100 <- Minus
arm_2R 14043397..14043498 17..118 100   Minus
arm_2R 14042651..14042847 206..402 99 <- Minus

BS01404.pep Sequence

Translation from 16 to 399

> BS01404.pep
MMSSDQQFFLKWNDFQTNMVTSFRHLRDEKSFTDVTLACEGQTCKAHKMV
LSACSPYFKALLEENPSKHPIIILKDVSYIHLQAILEFMYAGEVNVSQEQ
LPAFLKTADRLKVKGLAETPSSIKREG*

BS01404.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
lolal-PH 127 CG5738-PH 1..127 1..127 657 100 Plus
lolal-PG 127 CG5738-PG 1..127 1..127 657 100 Plus
lolal-PF 127 CG5738-PF 1..127 1..127 657 100 Plus
lolal-PE 127 CG5738-PE 1..127 1..127 657 100 Plus
lolal-PD 127 CG5738-PD 1..127 1..127 657 100 Plus